# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 66 ABC_tran PF00005.22 137 4.5e-05 15.2 0.0 1 1 1.5e-06 5e-05 15.0 0.0 16 67 5 55 2 64 0.82 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_5 - 220 TIGR00091 TIGR00091 194 0.0002 11.8 0.0 1 1 1.2e-05 0.00039 10.9 0.0 11 86 44 115 37 126 0.78 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 2_2 - 322 ThiF PF00899.16 136 9.4e-40 127.0 0.0 1 1 4.6e-41 1.6e-39 126.3 0.0 2 132 23 153 22 155 0.98 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 3_1 - 66 FtsK_SpoIIIE PF01580.13 205 8e-05 13.5 0.0 1 1 2.4e-06 8.3e-05 13.5 0.0 45 88 7 48 5 64 0.81 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_6 - 195 HTH_38 PF13936.1 44 5.7e-06 17.3 0.1 1 2 0.044 1.5 -0.1 0.0 6 15 17 26 15 34 0.79 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_6 - 195 HTH_38 PF13936.1 44 5.7e-06 17.3 0.1 2 2 1.8e-06 6.2e-05 14.0 0.0 4 39 151 186 148 187 0.89 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 2_2 - 322 2-Hacid_dh_C PF02826.14 178 0.00027 11.5 0.0 1 1 1.5e-05 0.00052 10.6 0.0 28 73 15 61 1 77 0.74 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 3_1 - 66 MobB PF03205.9 140 6.7e-06 17.2 0.0 1 1 4.5e-07 7.6e-06 17.1 0.0 7 44 7 42 1 45 0.88 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 MobB PF03205.9 140 3.2e-05 15.1 0.1 1 1 1e-05 0.00018 12.6 0.1 10 102 12 86 2 105 0.68 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_4 - 117 HTH_Tnp_4 PF13613.1 53 0.00016 12.6 0.0 1 1 7.9e-06 0.00027 11.9 0.0 15 38 43 66 42 67 0.93 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 2_1 - 160 NanE PF04131.9 192 2e-05 15.0 0.0 1 1 1.3e-06 4.5e-05 13.8 0.0 144 190 79 128 69 130 0.85 # 3 # 482 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 2_2 - 322 NAD_binding_7 PF13241.1 103 2.1e-05 16.2 0.0 1 1 1.4e-06 4.8e-05 15.0 0.0 5 91 21 144 19 148 0.70 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 3_1 - 66 AAA_19 PF13245.1 76 9e-05 13.6 0.1 1 1 3.3e-06 0.00011 13.3 0.1 15 48 5 34 2 42 0.85 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 CbiA PF01656.18 195 8.6e-28 88.4 1.4 1 1 1.1e-28 1.9e-27 87.3 1.4 1 143 4 124 4 170 0.74 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 CbiA PF01656.18 195 1.2e-16 52.0 0.0 1 1 7.2e-18 1.2e-16 52.0 0.0 1 46 2 47 2 64 0.88 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 4_2 - 326 Rep_3 PF01051.16 222 2.1e-56 182.4 0.0 1 1 7.9e-58 2.7e-56 182.0 0.0 1 222 4 235 4 235 0.92 # 1690 # 2667 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 3_1 - 66 YhjQ PF06564.7 244 0.00011 13.0 0.0 1 1 3.5e-06 0.00012 12.8 0.0 10 41 8 39 2 52 0.89 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_5 - 220 Methyltransf_26 PF13659.1 117 2.7e-08 25.3 0.0 1 1 1.2e-09 4e-08 24.8 0.0 3 75 52 120 50 215 0.86 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_1 - 66 Zeta_toxin PF06414.7 201 0.00033 11.1 0.1 1 1 1.1e-05 0.00037 11.0 0.1 20 51 4 37 1 45 0.87 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 AAA_30 PF13604.1 196 6.4e-05 14.0 0.1 1 1 4.3e-06 7.3e-05 13.8 0.1 21 51 3 33 1 40 0.91 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 AAA_30 PF13604.1 196 0.00011 13.2 0.2 1 1 1.3e-05 0.00023 12.2 0.2 26 106 10 88 2 97 0.78 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_1 - 160 His_biosynth PF00977.16 229 2.5e-05 15.0 0.0 1 1 9.5e-07 3.2e-05 14.6 0.0 72 132 77 136 58 152 0.77 # 3 # 482 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 1_11 - 36 HTH_Tnp_1 PF01527.15 76 1e-06 20.1 0.0 1 1 3.3e-08 1.1e-06 20.0 0.0 5 27 4 26 1 27 0.91 # 8676 # 8783 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 333 TIGR00464 TIGR00464 470 4.6e-05 13.4 2.1 1 1 3.5e-06 5.9e-05 13.1 2.1 343 466 196 320 173 324 0.86 # 893 # 1891 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 2_6 - 519 TIGR00464 TIGR00464 470 0.011 5.6 8.9 1 2 4.5e-05 0.00076 9.4 1.5 340 463 251 376 234 382 0.72 # 4079 # 5635 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_6 - 519 TIGR00464 TIGR00464 470 0.011 5.6 8.9 2 2 0.038 0.64 -0.2 1.0 356 419 437 501 397 515 0.45 # 4079 # 5635 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_8 - 207 MipZ PF09140.6 261 7.4e-14 42.7 0.9 1 2 4.8e-10 8.2e-09 26.2 0.0 2 47 3 47 2 56 0.88 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 MipZ PF09140.6 261 7.4e-14 42.7 0.9 2 2 1e-06 1.7e-05 15.3 0.3 96 141 73 118 49 150 0.84 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 MipZ PF09140.6 261 5.7e-11 33.3 0.0 1 1 3.3e-12 5.7e-11 33.3 0.0 6 47 5 46 1 61 0.82 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_5 - 220 Methyltransf_25 PF13649.1 101 1.4e-07 23.3 0.0 1 1 6.6e-09 2.2e-07 22.6 0.0 2 82 54 129 53 150 0.79 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_8 - 207 LexA_DNA_bind PF01726.11 65 0.00025 12.1 0.0 1 1 1.6e-05 0.00053 11.0 0.0 8 34 143 169 138 175 0.91 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 TIGR00064 TIGR00064 279 0.00024 11.4 0.3 1 1 8e-06 0.00027 11.3 0.3 82 116 3 37 1 41 0.89 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 2_4 - 117 MerR_1 PF13411.1 69 0.00012 13.3 0.0 1 2 0.00091 0.031 5.5 0.0 1 18 26 43 26 44 0.93 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 2_4 - 117 MerR_1 PF13411.1 69 0.00012 13.3 0.0 2 2 0.00095 0.032 5.5 0.0 4 26 51 73 48 78 0.84 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 3_1 - 66 TIGR01085 TIGR01085 472 0.00031 10.7 0.0 1 1 9.1e-06 0.00031 10.7 0.0 92 121 9 38 7 60 0.86 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 cobW PF02492.14 178 7.2e-05 13.7 0.0 1 1 4.4e-06 7.5e-05 13.6 0.0 3 37 3 38 1 51 0.86 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 cobW PF02492.14 178 0.00017 12.5 0.1 1 2 5.5e-05 0.00094 10.0 0.0 10 38 12 41 3 48 0.86 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 cobW PF02492.14 178 0.00017 12.5 0.1 2 2 0.063 1.1 0.1 0.0 114 146 115 147 71 158 0.76 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 NodS PF05401.6 201 3.8e-07 21.1 0.0 1 1 1.5e-08 5.1e-07 20.6 0.0 16 146 20 160 15 169 0.75 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_1 - 66 Thymidylate_kin PF02223.12 186 6.8e-05 13.7 0.0 1 1 2.4e-06 8e-05 13.4 0.0 3 36 7 41 5 45 0.82 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_14 - 361 Pyr_redox PF00070.22 80 0.00016 13.5 0.0 1 2 0.00014 0.0049 8.7 0.0 2 30 54 82 53 86 0.88 # 9830 # 10912 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_14 - 361 Pyr_redox PF00070.22 80 0.00016 13.5 0.0 2 2 0.019 0.64 1.9 0.0 40 58 185 203 179 209 0.84 # 9830 # 10912 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 3_1 - 66 SRP54 PF00448.17 196 4.4e-06 17.6 0.2 1 1 1.5e-07 5e-06 17.4 0.2 5 38 4 37 1 41 0.91 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 2_4 - 117 HTH_3 PF01381.17 55 7.1e-08 23.7 0.3 1 2 0.033 1.1 0.6 0.0 10 26 26 42 23 43 0.78 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 2_4 - 117 HTH_3 PF01381.17 55 7.1e-08 23.7 0.3 2 2 8.5e-09 2.9e-07 21.7 0.2 2 49 40 86 40 91 0.92 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_6 - 195 HTH_23 PF13384.1 50 1.8e-06 18.9 0.1 1 1 1.1e-07 3.9e-06 17.9 0.1 5 39 155 189 151 191 0.90 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_1 - 66 Fer4_NifH PF00142.13 273 3.8e-08 24.1 0.0 1 1 2.3e-09 3.8e-08 24.1 0.0 6 41 6 41 1 64 0.84 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 Fer4_NifH PF00142.13 273 1e-07 22.7 0.0 1 1 1e-08 1.8e-07 22.0 0.0 8 63 10 65 3 91 0.88 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 195 HTH_7 PF02796.10 45 2.3e-14 44.4 0.0 1 1 1.5e-15 5.3e-14 43.3 0.0 1 44 147 190 147 191 0.96 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 2_4 - 117 HTH_19 PF12844.2 64 1.1e-05 16.9 0.1 1 1 4.8e-07 1.6e-05 16.3 0.1 1 51 36 85 36 89 0.83 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 3_1 - 66 NB-ARC PF00931.17 287 0.0001 12.5 0.0 1 1 3.1e-06 0.0001 12.5 0.0 23 43 4 24 1 56 0.87 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 2_2 - 322 Saccharop_dh PF03435.13 386 9.6e-07 19.4 0.3 1 2 2.8e-07 9.5e-06 16.1 0.6 1 100 26 159 26 206 0.70 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 2_2 - 322 Saccharop_dh PF03435.13 386 9.6e-07 19.4 0.3 2 2 0.028 0.95 -0.4 0.0 261 307 256 298 223 306 0.75 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 1_6 - 195 HTH_29 PF13551.1 112 1.4e-05 16.7 0.7 1 2 0.00043 0.015 6.9 0.1 38 70 133 164 124 166 0.82 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_6 - 195 HTH_29 PF13551.1 112 1.4e-05 16.7 0.7 2 2 3.1e-05 0.0011 10.6 0.1 4 34 160 189 159 192 0.91 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_1 - 66 TIGR00595 TIGR00595 509 0.00028 10.5 0.0 1 1 9.5e-06 0.00032 10.3 0.0 1 29 4 32 4 37 0.87 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 DUF1611 PF07755.6 301 9.4e-07 19.1 0.4 1 1 4.4e-08 1.5e-06 18.4 0.4 124 200 13 90 11 105 0.87 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_31 PF13847.1 152 1.4e-11 35.5 0.0 1 1 7.3e-13 2.5e-11 34.8 0.0 5 106 51 152 47 166 0.89 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_1 - 66 TrwB_AAD_bind PF10412.4 386 3.4e-05 13.9 0.0 1 1 1.1e-06 3.6e-05 13.8 0.0 20 63 5 49 2 62 0.75 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 TIGR01968 TIGR01968 261 1.1e-12 38.9 2.1 1 2 3.7e-09 6.2e-08 23.3 0.1 2 39 2 39 1 47 0.90 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 TIGR01968 TIGR01968 261 1.1e-12 38.9 2.1 2 2 8.5e-07 1.4e-05 15.5 0.4 107 218 72 183 56 202 0.74 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 TIGR01968 TIGR01968 261 2.4e-11 34.5 0.3 1 1 1.6e-12 2.7e-11 34.3 0.3 7 39 5 37 1 42 0.92 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 GvpD PF07088.6 484 0.00013 11.7 0.0 1 1 4.1e-06 0.00014 11.6 0.0 15 64 5 54 2 62 0.79 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_5 - 220 Methyltransf_12 PF08242.7 99 1.5e-15 49.0 0.1 1 2 2.3e-16 8e-15 46.6 0.0 1 99 54 152 54 152 0.95 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 220 Methyltransf_12 PF08242.7 99 1.5e-15 49.0 0.1 2 2 0.081 2.7 -0.0 0.0 49 70 181 202 161 210 0.76 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 195 HTH_28 PF13518.1 52 2.3e-06 19.0 0.1 1 1 1.5e-07 5.2e-06 17.9 0.1 1 34 156 189 156 192 0.89 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_1 - 66 TIGR00041 TIGR00041 196 0.00015 12.6 0.0 1 1 4.3e-06 0.00015 12.6 0.0 9 45 5 41 1 63 0.78 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 2_1 - 160 ThiG PF05690.9 247 5.8e-69 223.2 0.2 1 1 3.8e-70 6.4e-69 223.1 0.2 99 247 2 151 1 151 0.99 # 3 # 482 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 1_16 - 92 ThiG PF05690.9 247 1.3e-31 100.9 0.0 1 1 7.9e-33 1.3e-31 100.8 0.0 3 96 3 92 1 92 0.94 # 11110 # 11385 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.569 2_2 - 322 Shikimate_DH PF01488.15 135 4.6e-05 14.9 0.2 1 1 2.4e-06 8.3e-05 14.1 0.2 7 36 18 47 12 53 0.87 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 1_5 - 220 TIGR03533 TIGR03533 284 0.00011 12.6 0.0 1 1 5.8e-06 0.0002 11.8 0.0 113 191 41 117 36 121 0.76 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 220 TIGR03534 TIGR03534 253 3.2e-06 17.8 0.0 1 1 1.5e-07 5.2e-06 17.1 0.0 81 159 42 118 35 120 0.83 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_1 - 66 LpxK PF02606.9 326 2.4e-05 14.7 0.1 1 1 7.7e-07 2.6e-05 14.6 0.1 46 71 9 34 7 46 0.94 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 2_4 - 117 HTH_31 PF13560.1 64 2.4e-07 22.3 0.1 1 1 1.1e-08 3.7e-07 21.7 0.1 4 55 37 86 27 93 0.88 # 2937 # 3287 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 3_1 - 66 DUF2075 PF09848.4 352 2.8e-05 14.5 0.0 1 1 8.3e-07 2.8e-05 14.5 0.0 4 37 3 33 1 62 0.77 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 2_1 - 160 PcrB PF01884.12 231 0.00022 11.9 0.0 1 1 7.9e-06 0.00027 11.6 0.0 162 219 59 116 45 128 0.84 # 3 # 482 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 3_1 - 66 NACHT PF05729.7 166 0.00016 12.7 0.1 1 1 5.9e-06 0.0002 12.4 0.1 3 28 3 28 1 37 0.88 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 UPF0079 PF02367.12 123 0.00011 13.2 0.0 1 1 3.3e-06 0.00011 13.2 0.0 18 45 3 31 1 55 0.74 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 AAA_17 PF13207.1 121 0.00023 13.4 0.0 1 1 1.1e-05 0.00037 12.7 0.0 9 80 12 86 11 156 0.69 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_14 - 361 FAD_binding_2 PF00890.19 417 5e-06 16.9 0.2 1 1 2.9e-07 9.8e-06 15.9 0.1 4 49 56 100 55 147 0.91 # 9830 # 10912 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 3_1 - 66 AAA_25 PF13481.1 194 2.7e-05 15.0 0.0 1 1 9e-07 3e-05 14.8 0.0 37 78 4 35 2 50 0.75 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 Zot PF05707.7 193 3.8e-05 14.6 0.1 1 1 1.2e-06 3.9e-05 14.5 0.1 1 34 1 33 1 48 0.92 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 VirC1 PF07015.6 231 6.5e-15 46.2 0.2 1 1 7.1e-16 1.2e-14 45.3 0.2 1 129 1 121 1 157 0.81 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 VirC1 PF07015.6 231 9e-10 29.3 0.0 1 1 5.6e-11 9.6e-10 29.2 0.0 4 50 2 48 1 56 0.91 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_6 - 195 CENP-B_N PF04218.8 53 6.3e-05 13.8 0.0 1 1 4.6e-06 0.00016 12.6 0.0 11 42 156 187 151 191 0.89 # 5612 # 6196 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_1 - 66 ArgK PF03308.11 267 2e-07 21.4 0.1 1 1 1.4e-08 2.4e-07 21.1 0.1 35 70 6 41 2 44 0.91 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 ArgK PF03308.11 267 4e-05 13.8 0.0 1 1 5.4e-06 9.2e-05 12.6 0.0 39 72 12 45 5 54 0.89 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_15 - 66 ThiS PF02597.15 77 2.1e-12 38.8 0.0 1 1 7.1e-14 2.4e-12 38.6 0.0 17 77 10 65 3 65 0.90 # 10909 # 11106 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_5 - 220 MTS PF05175.9 170 7.4e-13 39.6 0.2 1 1 5.5e-14 1.9e-12 38.3 0.1 21 136 39 152 36 158 0.88 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 220 Methyltransf_23 PF13489.1 161 1.1e-11 36.1 0.0 1 1 4.2e-13 1.4e-11 35.7 0.0 15 152 43 196 29 203 0.84 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_1 - 66 APS_kinase PF01583.15 157 4e-06 17.9 0.0 1 1 1.4e-07 4.8e-06 17.7 0.0 5 39 3 37 1 41 0.93 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 NTPase_1 PF03266.10 168 4e-05 14.7 0.0 1 1 1.2e-06 4e-05 14.7 0.0 3 31 4 32 3 63 0.92 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 3HCDH_N PF02737.13 180 0.0003 11.8 0.0 1 1 8.9e-06 0.0003 11.8 0.0 9 33 15 39 9 62 0.84 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 ATP_bind_1 PF03029.12 238 7.8e-06 16.9 0.1 1 1 7.4e-07 1.3e-05 16.2 0.1 6 44 12 50 10 74 0.84 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 ATP_bind_1 PF03029.12 238 8e-05 13.6 0.0 1 1 4.7e-06 8e-05 13.6 0.0 3 41 7 45 5 62 0.89 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 PIF1 PF05970.9 364 7.3e-06 16.4 0.1 1 1 2.5e-07 8.6e-06 16.2 0.1 26 56 4 34 1 38 0.93 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_14 - 361 DAO PF01266.19 358 2.9e-31 99.9 2.1 1 1 8.6e-31 2.9e-29 93.3 2.1 4 356 56 351 53 354 0.84 # 9830 # 10912 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 2_6 - 519 Seryl_tRNA_N PF02403.17 108 0.083 4.4 14.9 1 2 0.0014 0.049 5.1 0.3 38 106 245 314 232 316 0.66 # 4079 # 5635 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_6 - 519 Seryl_tRNA_N PF02403.17 108 0.083 4.4 14.9 2 2 0.00048 0.016 6.7 2.0 26 93 436 507 414 517 0.81 # 4079 # 5635 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 3_1 - 66 AAA_10 PF12846.2 304 3.2e-06 18.1 0.0 1 1 1.9e-07 3.2e-06 18.1 0.0 6 47 5 48 2 61 0.87 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 AAA_10 PF12846.2 304 2.2e-05 15.3 0.0 1 1 1.6e-06 2.7e-05 15.1 0.0 11 47 12 50 10 171 0.91 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_5 - 220 Methyltransf_18 PF12847.2 112 4.1e-11 34.9 0.0 1 1 2.8e-12 9.5e-11 33.7 0.0 3 107 51 152 50 157 0.86 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 220 Methyltransf_11 PF08241.7 95 2e-13 42.1 0.0 1 1 1.1e-14 3.8e-13 41.2 0.0 1 93 54 152 54 153 0.91 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_1 - 66 ArsA_ATPase PF02374.10 305 2.8e-13 40.9 0.1 1 1 1.6e-14 2.8e-13 40.9 0.1 5 49 4 48 1 61 0.93 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_8 - 207 ArsA_ATPase PF02374.10 305 2.1e-07 21.6 0.2 1 1 2.1e-08 3.5e-07 20.9 0.1 5 45 6 46 1 84 0.91 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 AAA_31 PF13614.1 157 2e-08 25.7 0.2 1 2 2.5e-07 4.2e-06 18.2 0.0 1 39 2 40 2 46 0.94 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_8 - 207 AAA_31 PF13614.1 157 2e-08 25.7 0.2 2 2 0.0021 0.036 5.4 0.0 115 152 74 109 58 114 0.83 # 7193 # 7813 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 66 AAA_31 PF13614.1 157 2.1e-08 25.7 0.0 1 1 1.2e-09 2.1e-08 25.7 0.0 8 50 7 49 1 64 0.75 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_15 - 66 TGS PF02824.16 60 0.00032 11.9 0.0 1 1 1.5e-05 0.00051 11.3 0.0 28 59 24 59 10 60 0.75 # 10909 # 11106 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 3_1 - 66 IstB_IS21 PF01695.12 178 7.4e-05 13.6 0.6 1 2 8.4e-06 0.00028 11.7 0.2 52 83 5 36 3 40 0.91 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 3_1 - 66 IstB_IS21 PF01695.12 178 7.4e-05 13.6 0.6 2 2 0.021 0.72 0.6 0.0 124 142 46 64 36 65 0.82 # 1741 # 1938 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.455 1_5 - 220 Methyltransf_9 PF08003.6 315 2.4e-05 14.4 0.0 1 1 8.2e-07 2.8e-05 14.3 0.0 95 174 30 104 10 167 0.71 # 4623 # 5282 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 2_2 - 322 Semialdhyde_dh PF01118.19 121 0.00046 11.9 0.6 1 2 5.7e-05 0.0019 9.9 0.0 1 100 25 124 25 146 0.81 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 2_2 - 322 Semialdhyde_dh PF01118.19 121 0.00046 11.9 0.6 2 2 0.097 3.3 -0.5 0.2 3 12 145 154 143 156 0.87 # 498 # 1463 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/31037bb9-0b67-48f3-b356-f107509b9ff1 # Target file: checkm_output/bins/pm1953/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1953/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/31037bb9-0b67-48f3-b356-f107509b9ff1 checkm_output/bins/pm1953/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:14 2017 # [ok]