# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 196 HTH_IclR PF09339.5 52 6.6e-05 13.6 0.0 1 1 8e-06 0.00022 12.0 0.0 12 40 155 183 153 184 0.89 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_22 PF13309.1 64 1.1e-05 16.3 0.2 1 2 0.05 1.4 -0.1 0.0 26 38 75 87 67 87 0.85 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_22 PF13309.1 64 1.1e-05 16.3 0.2 2 2 4.9e-06 0.00014 12.8 0.1 44 63 163 182 135 183 0.91 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_38 PF13936.1 44 7.7e-09 26.2 4.0 1 2 0.017 0.48 1.3 0.6 9 22 120 134 117 147 0.73 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_38 PF13936.1 44 7.7e-09 26.2 4.0 2 2 4.7e-10 1.3e-08 25.5 0.2 11 41 152 182 149 183 0.95 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 186 DUF3584 PF12128.3 1201 0.00015 10.2 9.4 1 1 6.1e-06 0.00017 10.0 9.4 657 759 28 130 4 158 0.64 # 15000 # 15557 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_10 - 196 TetR_N PF00440.18 47 7.2e-07 20.0 0.1 1 2 0.043 1.2 0.1 0.0 8 21 3 16 1 16 0.84 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 TetR_N PF00440.18 47 7.2e-07 20.0 0.1 2 2 2.5e-07 7.1e-06 16.8 0.1 16 35 161 180 160 181 0.95 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_21 - 116 TIGR01074 TIGR01074 668 6.4e-05 12.0 0.0 1 1 2.5e-06 7e-05 11.9 0.0 598 649 55 107 44 115 0.87 # 14226 # 14573 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 1_10 - 196 HTH_3 PF01381.17 55 7.7e-05 13.7 0.1 1 1 6.8e-06 0.00019 12.4 0.1 1 31 154 183 154 185 0.92 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_23 PF13384.1 50 2.8e-06 18.1 0.1 1 1 6.4e-07 9e-06 16.5 0.1 10 39 154 183 152 185 0.91 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_14 - 160 HTH_23 PF13384.1 50 0.00011 13.1 0.1 1 1 1.6e-05 0.00023 12.0 0.1 18 40 35 57 23 64 0.90 # 9189 # 9668 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_10 - 196 HTH_7 PF02796.10 45 5.7e-10 30.1 0.6 1 1 7.5e-11 2.1e-09 28.3 0.1 1 43 143 183 143 184 0.89 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_25 - 160 RepL PF05732.6 165 1.2e-15 48.3 0.7 1 1 5.1e-17 1.4e-15 48.0 0.7 7 139 4 140 2 155 0.87 # 17770 # 18249 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_10 - 196 HTH_29 PF13551.1 112 3.4e-05 15.1 1.1 1 2 0.019 0.54 1.6 0.1 32 63 123 154 88 159 0.78 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_29 PF13551.1 112 3.4e-05 15.1 1.1 2 2 6.3e-06 0.00018 12.8 0.1 4 34 154 183 152 189 0.89 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_28 PF13518.1 52 1e-05 16.6 0.3 1 1 1.8e-06 2.5e-05 15.4 0.1 7 34 156 183 146 184 0.81 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_14 - 160 HTH_28 PF13518.1 52 1.6e-05 16.1 0.1 1 1 4.1e-06 5.8e-05 14.3 0.1 4 35 23 57 22 59 0.87 # 9189 # 9668 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_10 - 196 HTH_Tnp_ISL3 PF13542.1 52 9e-05 12.8 0.1 1 2 0.037 1 -0.2 0.0 38 46 35 43 33 43 0.89 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 HTH_Tnp_ISL3 PF13542.1 52 9e-05 12.8 0.1 2 2 2.2e-05 0.00063 10.1 0.1 23 49 156 183 154 184 0.87 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_10 - 196 CENP-B_N PF04218.8 53 4.5e-05 14.0 0.2 1 1 5.5e-06 0.00015 12.3 0.0 22 44 161 183 153 186 0.85 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 186 AlaDh_PNT_C PF01262.16 168 0.0014 9.3 5.9 1 2 5.6e-05 0.0016 9.2 4.3 34 101 26 106 24 110 0.80 # 15000 # 15557 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_23 - 186 AlaDh_PNT_C PF01262.16 168 0.0014 9.3 5.9 2 2 0.0052 0.15 2.7 2.7 31 101 61 135 60 138 0.76 # 15000 # 15557 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_10 - 196 HTH_11 PF08279.7 55 7.6e-05 13.5 0.2 1 1 9.1e-06 0.00026 11.8 0.1 7 36 152 182 146 184 0.85 # 6849 # 7436 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_20 - 135 TrmB PF01978.14 68 0.00015 12.6 0.0 1 1 2e-05 0.00028 11.8 0.0 22 42 43 63 40 69 0.90 # 13825 # 14229 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.383 1_25 - 160 TrmB PF01978.14 68 0.00018 12.3 0.0 1 1 3e-05 0.00043 11.2 0.0 25 59 79 113 72 122 0.84 # 17770 # 18249 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_25 - 160 HTH_Crp_2 PF13545.1 76 0.00019 12.4 0.0 1 1 1.3e-05 0.00035 11.5 0.0 22 70 70 118 56 123 0.77 # 17770 # 18249 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/dff54c62-191f-40a5-8359-305496e1b4e3 # Target file: checkm_output/bins/pm1946/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1946/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dff54c62-191f-40a5-8359-305496e1b4e3 checkm_output/bins/pm1946/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:08 2017 # [ok]