# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 143 HTH_41 PF14502.1 48 9.5e-07 17.2 0.0 1 1 3.1e-07 1.6e-06 16.5 0.0 9 34 60 85 58 88 0.89 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_DeoR PF08220.7 57 9.4e-06 13.9 0.0 1 1 4.6e-06 2.3e-05 12.7 0.0 16 46 59 89 47 91 0.89 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 MarR PF01047.17 59 2.4e-09 25.6 0.0 1 1 9.8e-10 4.9e-09 24.6 0.0 10 57 50 98 46 99 0.91 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_Tnp_4 PF13613.1 53 7.1e-06 14.3 0.1 1 1 3.5e-06 1.8e-05 13.0 0.0 19 45 57 83 57 89 0.91 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 Fe_dep_repress PF01325.14 60 8.5e-07 17.6 0.0 1 2 2.3e-06 1.1e-05 14.0 0.0 23 56 58 91 49 94 0.87 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 Fe_dep_repress PF01325.14 60 8.5e-07 17.6 0.0 2 2 0.024 0.12 1.2 0.0 26 45 108 127 101 131 0.75 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 GntR PF00392.16 64 4.4e-08 21.3 0.0 1 1 1.4e-08 7.1e-08 20.6 0.0 25 56 58 89 56 93 0.92 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_23 PF13384.1 50 1.3e-05 13.6 0.0 1 1 8.8e-06 4.4e-05 11.9 0.0 23 41 63 81 59 88 0.83 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_29 PF13551.1 112 3.7e-05 12.6 0.0 1 1 1.6e-05 7.8e-05 11.6 0.0 15 52 60 94 52 111 0.78 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_28 PF13518.1 52 2.4e-06 16.3 0.3 1 2 0.072 0.36 -0.3 0.1 30 41 3 14 2 20 0.81 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_28 PF13518.1 52 2.4e-06 16.3 0.3 2 2 2.3e-06 1.2e-05 14.1 0.0 14 46 59 89 46 98 0.77 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_24 PF13412.1 48 1.6e-06 16.2 0.0 1 1 6.4e-07 3.2e-06 15.3 0.0 16 47 56 87 51 88 0.89 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_36 PF13730.1 55 4.6e-10 28.3 0.0 1 1 1.4e-10 7e-10 27.7 0.0 24 55 54 87 32 87 0.82 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_Tnp_ISL3 PF13542.1 52 2.1e-06 15.6 0.0 1 1 7.9e-07 3.9e-06 14.8 0.0 28 50 58 80 56 82 0.91 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_11 PF08279.7 55 5.5e-08 21.2 0.0 1 1 2e-08 1e-07 20.3 0.0 17 43 59 85 43 92 0.87 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 MarR_2 PF12802.2 62 1.1e-07 20.2 0.0 1 1 4.9e-08 2.4e-07 19.1 0.0 24 61 60 98 50 99 0.87 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 TrmB PF01978.14 68 2.2e-05 12.9 0.2 1 1 1.1e-05 5.3e-05 11.7 0.1 26 58 61 93 57 112 0.83 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 LacI PF00356.16 46 1.4e-05 13.4 0.1 1 1 5.5e-06 2.7e-05 12.5 0.1 2 23 60 81 59 85 0.86 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 143 HTH_Crp_2 PF13545.1 76 1.4e-07 20.0 0.0 1 1 4e-08 2e-07 19.5 0.0 30 72 59 109 56 113 0.76 # 742 # 1170 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.422 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/123b5b64-7ebc-40c9-bc9d-7638ce434caa # Target file: checkm_output/bins/pm1942/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1942/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/123b5b64-7ebc-40c9-bc9d-7638ce434caa checkm_output/bins/pm1942/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:55:57 2017 # [ok]