# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 103 DUF134 PF02001.11 106 5.9e-05 12.4 0.0 1 1 9.2e-06 7.4e-05 12.0 0.0 56 84 35 63 12 77 0.85 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_AsnC-type PF13404.1 42 1.2e-05 14.2 0.0 1 1 2.2e-06 1.7e-05 13.7 0.0 8 35 27 54 25 55 0.94 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_8 PF02954.14 42 1.7e-06 16.9 0.0 1 1 3.5e-07 2.8e-06 16.3 0.0 10 32 28 50 26 55 0.87 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 Sigma70_r4 PF04545.11 50 2.7e-07 19.3 0.0 1 1 5.4e-08 4.3e-07 18.6 0.0 10 39 23 55 20 63 0.86 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 Phage_CI_repr PF07022.8 66 3.8e-05 13.2 0.0 1 1 7.6e-06 6.1e-05 12.5 0.0 14 56 38 81 27 82 0.85 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_37 PF13744.1 80 1.7e-27 84.5 0.0 1 1 2.5e-28 2e-27 84.3 0.0 14 78 19 83 6 85 0.94 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 NUMOD1 PF07453.8 37 2.9e-05 13.3 0.0 1 1 8e-06 6.4e-05 12.2 0.0 18 36 38 56 38 57 0.89 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_1 PF00126.22 60 5e-07 18.8 0.0 1 1 8.3e-08 6.7e-07 18.4 0.0 15 34 38 57 31 70 0.89 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_3 PF01381.17 55 6.1e-12 34.7 0.0 1 1 9.6e-13 7.7e-12 34.4 0.0 1 44 28 72 28 81 0.92 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_23 PF13384.1 50 5.1e-07 18.7 0.0 1 1 9.6e-08 7.7e-07 18.1 0.0 12 37 31 56 23 59 0.86 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_19 PF12844.2 64 2.2e-12 36.3 0.0 1 1 3.9e-13 3.1e-12 35.8 0.0 4 57 28 86 27 90 0.83 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_28 PF13518.1 52 2.2e-07 20.3 0.0 1 1 3.7e-08 3e-07 19.8 0.0 5 33 27 57 23 59 0.75 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_24 PF13412.1 48 7.2e-06 14.8 0.1 1 1 1.3e-06 1e-05 14.3 0.1 19 39 38 58 19 58 0.86 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_31 PF13560.1 64 1.1e-07 21.4 0.0 1 1 1.8e-08 1.5e-07 21.0 0.0 9 48 31 70 27 79 0.87 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_26 PF13443.1 63 1e-10 31.1 0.1 1 1 2e-11 1.6e-10 30.5 0.1 2 43 28 69 28 72 0.97 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 HTH_17 PF12728.2 51 2.5e-05 13.9 0.0 1 1 5.2e-06 4.2e-05 13.2 0.0 5 28 40 62 37 75 0.85 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_2 - 103 MarR_2 PF12802.2 62 1.6e-05 14.0 0.0 1 1 2.9e-06 2.3e-05 13.4 0.0 22 43 37 58 25 59 0.90 # 791 # 1099 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/60c936bd-389b-492a-b72f-2817aeb29b27 # Target file: checkm_output/bins/pm1926/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1926/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/60c936bd-389b-492a-b72f-2817aeb29b27 checkm_output/bins/pm1926/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:55:37 2017 # [ok]