# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 110 HTH_IclR PF09339.5 52 7.3e-06 14.8 0.0 1 1 2.2e-06 1.5e-05 13.8 0.0 15 36 80 101 66 104 0.92 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_40 PF14493.1 91 2e-05 14.0 0.0 1 1 7.6e-06 5.3e-05 12.6 0.0 5 32 75 102 71 107 0.87 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_38 PF13936.1 44 9.7e-07 17.5 0.0 1 1 2.4e-07 1.7e-06 16.8 0.0 16 42 76 105 69 106 0.83 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 Sigma70_r4_2 PF08281.7 54 5.4e-09 24.7 0.0 1 1 1.3e-09 9.3e-09 23.9 0.0 12 48 69 105 69 109 0.94 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 GerE PF00196.14 58 1.2e-05 13.8 0.3 1 1 2.9e-06 2e-05 13.1 0.3 10 40 74 105 72 107 0.81 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 Sigma70_r4 PF04545.11 50 7.2e-07 17.7 0.0 1 1 1.7e-07 1.2e-06 17.0 0.0 6 37 69 100 69 107 0.92 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_23 PF13384.1 50 6e-07 18.3 0.0 1 1 1.4e-07 9.9e-07 17.6 0.0 8 37 73 104 67 107 0.80 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_7 PF02796.10 45 1.4e-06 17.4 0.4 1 2 0.094 0.66 -0.8 0.0 5 17 35 47 33 50 0.75 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_7 PF02796.10 45 1.4e-06 17.4 0.4 2 2 6.5e-07 4.5e-06 15.7 0.1 18 39 80 101 68 107 0.88 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 99 HTH_19 PF12844.2 64 7.3e-05 12.0 0.0 1 1 1.5e-05 0.0001 11.5 0.0 27 58 9 41 2 47 0.88 # 5259 # 5555 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_5 - 110 HTH_Tnp_IS1 PF12759.2 46 5.2e-06 15.1 0.0 1 1 1.2e-06 8.1e-06 14.5 0.0 3 46 64 108 63 108 0.93 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_28 PF13518.1 52 5.7e-05 12.4 0.0 1 1 1.3e-05 8.9e-05 11.7 0.0 8 31 79 102 73 108 0.90 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_24 PF13412.1 48 9.3e-06 14.2 0.0 1 1 2.1e-06 1.5e-05 13.6 0.0 13 39 80 105 70 106 0.77 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_10 PF04967.7 53 3.2e-05 12.7 0.2 1 1 3.2e-05 0.00023 10.0 0.2 5 46 72 106 70 109 0.78 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 G6PD_N PF00479.17 183 2.3e-06 17.1 0.0 1 1 4.1e-07 2.8e-06 16.8 0.0 83 133 37 87 26 95 0.88 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 HTH_Tnp_ISL3 PF13542.1 52 3.1e-06 15.5 0.0 1 1 8.1e-07 5.7e-06 14.7 0.0 17 49 72 105 69 107 0.85 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_1 - 121 HTH_17 PF12728.2 51 1.5e-05 14.4 0.1 1 1 9.9e-06 3.5e-05 13.3 0.1 1 26 3 28 3 48 0.82 # 2 # 364 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 1_5 - 110 HTH_17 PF12728.2 51 1.6e-05 14.3 0.1 1 1 9.5e-06 3.3e-05 13.3 0.0 2 24 84 106 83 108 0.92 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_1 - 121 HTH_11 PF08279.7 55 3.1e-05 12.8 0.1 1 2 0.0016 0.0057 5.6 0.0 28 37 16 25 9 26 0.81 # 2 # 364 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 1_1 - 121 HTH_11 PF08279.7 55 3.1e-05 12.8 0.1 2 2 0.0025 0.0087 5.0 0.0 30 51 81 102 80 103 0.90 # 2 # 364 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 1_5 - 110 HTH_11 PF08279.7 55 4.2e-05 12.4 0.0 1 1 2.2e-05 7.5e-05 11.6 0.0 3 37 73 105 71 106 0.81 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 TrmB PF01978.14 68 2.3e-06 16.5 0.6 1 2 0.022 0.15 1.0 0.1 51 68 51 70 23 70 0.61 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 TrmB PF01978.14 68 2.3e-06 16.5 0.6 2 2 2.8e-06 1.9e-05 13.5 0.1 20 45 81 106 79 106 0.90 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 Phage_AlpA PF05930.7 51 3.2e-05 12.9 0.0 1 2 0.025 0.17 0.9 0.0 12 25 33 46 29 58 0.87 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 110 Phage_AlpA PF05930.7 51 3.2e-05 12.9 0.0 2 2 4.7e-05 0.00033 9.6 0.0 6 26 86 106 83 108 0.87 # 2839 # 3168 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4106f727-d849-48ac-b0f8-75c044b2e2b3 # Target file: checkm_output/bins/pm1921/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1921/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4106f727-d849-48ac-b0f8-75c044b2e2b3 checkm_output/bins/pm1921/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:55:37 2017 # [ok]