# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 90 HTH_8 PF02954.14 42 4.6e-07 19.1 0.0 1 1 9.2e-08 9.2e-07 18.1 0.0 20 37 10 27 9 31 0.90 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 MerR_1 PF13411.1 69 9.3e-06 15.1 0.1 1 1 1.7e-06 1.7e-05 14.3 0.0 3 37 11 44 9 52 0.86 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 HTH_23 PF13384.1 50 6.1e-05 12.4 0.0 1 1 1.8e-05 0.00018 10.9 0.0 19 36 10 27 3 31 0.85 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 HTH_7 PF02796.10 45 9.9e-05 11.9 1.8 1 2 2.7e-05 0.00027 10.5 0.1 25 39 12 26 9 27 0.92 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 HTH_7 PF02796.10 45 9.9e-05 11.9 1.8 2 2 0.072 0.72 -0.4 0.1 31 41 34 44 33 46 0.82 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 MerR_2 PF13591.1 84 2.7e-05 13.5 0.0 1 1 3.9e-06 3.9e-05 12.9 0.0 2 44 10 52 9 59 0.93 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 HTH_28 PF13518.1 52 7.7e-06 15.6 0.0 1 1 1.3e-06 1.3e-05 14.9 0.0 14 45 10 37 2 44 0.75 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 MerR PF00376.18 38 1.8e-06 17.2 0.1 1 1 8e-07 8e-06 15.1 0.1 4 36 13 43 10 45 0.88 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_10 - 380 UBA_4 PF14555.1 43 8.4e-06 15.0 0.0 1 1 1.6e-06 1.6e-05 14.2 0.0 16 36 317 337 310 339 0.91 # 4628 # 5767 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_5 - 90 HTH_17 PF12728.2 51 6.6e-09 25.7 0.0 1 1 8.8e-10 8.8e-09 25.3 0.0 1 45 8 52 8 57 0.87 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_5 - 90 Phage_AlpA PF05930.7 51 4.9e-05 12.8 0.0 1 1 8.2e-06 8.2e-05 12.1 0.0 3 27 8 32 6 33 0.91 # 2098 # 2367 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7be5ff1e-8849-464e-b0e1-da1ce0f3bd93 # Target file: checkm_output/bins/pm1900/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1900/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7be5ff1e-8849-464e-b0e1-da1ce0f3bd93 checkm_output/bins/pm1900/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:53 2017 # [ok]