# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 92 Zn_Tnp_IS1 PF03811.8 36 2.9e-24 75.8 4.5 1 1 1.6e-25 5.6e-24 74.9 4.5 1 36 1 36 1 36 0.99 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_32 - 213 HTH_38 PF13936.1 44 0.00056 10.9 0.2 1 2 0.061 2.1 -0.5 0.0 3 20 81 98 79 99 0.86 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_32 - 213 HTH_38 PF13936.1 44 0.00056 10.9 0.2 2 2 1.6e-05 0.00056 10.9 0.2 28 43 191 206 171 207 0.80 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_33 - 221 MobB PF03205.9 140 3.7e-06 18.1 0.7 1 2 1e-05 0.00035 11.7 0.3 2 37 4 40 3 52 0.86 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 MobB PF03205.9 140 3.7e-06 18.1 0.7 2 2 0.0016 0.055 4.6 0.0 44 75 85 119 72 133 0.81 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 CbiA PF01656.18 195 1.4e-15 48.6 0.6 1 1 1.1e-16 3.8e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 281 Rep_3 PF01051.16 222 5.5e-24 76.4 7.1 1 1 2.1e-25 7.5e-24 75.9 7.1 5 222 10 256 8 256 0.85 # 962 # 1804 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_33 - 221 MipZ PF09140.6 261 2.6e-10 31.2 1.8 1 1 2.5e-09 8.7e-08 22.9 1.3 2 130 4 111 3 132 0.75 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 281 NUMOD1 PF07453.8 37 0.0033 8.8 5.8 1 2 0.06 2.1 -0.1 0.0 21 31 92 102 90 103 0.82 # 962 # 1804 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_3 - 281 NUMOD1 PF07453.8 37 0.0033 8.8 5.8 2 2 5e-05 0.0018 9.7 0.6 1 29 155 188 155 190 0.84 # 962 # 1804 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_33 - 221 SRP54 PF00448.17 196 0.00017 12.4 0.1 1 1 1.1e-05 0.00037 11.4 0.1 10 98 12 94 3 134 0.78 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_32 - 213 HTH_32 PF13565.1 77 0.00016 14.0 1.6 1 1 1.4e-05 0.0005 12.3 1.6 8 51 149 188 139 207 0.72 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_32 - 213 HTH_23 PF13384.1 50 4.3e-08 24.1 0.2 1 1 6.4e-09 1.1e-07 22.8 0.2 5 40 171 206 167 211 0.90 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_31 - 92 HTH_23 PF13384.1 50 1.2e-05 16.3 0.0 1 1 1.1e-06 2e-05 15.7 0.0 7 40 53 86 51 90 0.92 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 221 Fer4_NifH PF00142.13 273 5.3e-07 20.4 0.2 1 1 3.7e-08 1.3e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_32 - 213 HTH_7 PF02796.10 45 8.7e-09 26.7 0.3 1 2 0.0004 0.014 6.8 0.0 2 26 79 104 79 105 0.86 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_32 - 213 HTH_7 PF02796.10 45 8.7e-09 26.7 0.3 2 2 2.1e-07 7.2e-06 17.3 0.0 1 38 165 200 165 200 0.96 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_31 - 92 zinc_ribbon_4 PF13717.1 36 2e-05 15.7 4.1 1 1 1.6e-06 5.5e-05 14.3 4.1 3 35 6 39 5 40 0.86 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_32 - 213 HTH_29 PF13551.1 112 0.0012 10.5 4.4 1 3 0.073 2.6 -0.3 0.0 86 110 41 65 11 67 0.74 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_32 - 213 HTH_29 PF13551.1 112 0.0012 10.5 4.4 2 3 0.026 0.9 1.2 1.0 34 68 148 178 130 180 0.62 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_32 - 213 HTH_29 PF13551.1 112 0.0012 10.5 4.4 3 3 5.1e-05 0.0018 9.9 0.0 3 35 175 206 173 212 0.90 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_33 - 221 TIGR01968 TIGR01968 261 8.7e-12 36.0 1.5 1 2 2.9e-10 1e-08 25.9 0.7 2 54 3 52 2 60 0.89 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 TIGR01968 TIGR01968 261 8.7e-12 36.0 1.5 2 2 5.8e-05 0.002 8.5 0.0 101 143 69 111 63 135 0.90 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_31 - 92 HTH_Tnp_IS1 PF12759.2 46 1.9e-32 101.9 0.3 1 1 8.7e-34 3e-32 101.3 0.3 1 46 43 88 43 88 0.99 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_32 - 213 HTH_28 PF13518.1 52 7e-06 17.5 0.2 1 1 1.3e-06 2.3e-05 15.9 0.2 4 35 175 206 172 207 0.92 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_31 - 92 HTH_28 PF13518.1 52 2.2e-05 15.9 0.0 1 1 1.9e-06 3.4e-05 15.3 0.0 4 35 55 86 53 90 0.91 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 221 VirC1 PF07015.6 231 5e-09 26.9 0.0 1 1 2.6e-10 9.2e-09 26.1 0.0 3 55 4 56 2 61 0.92 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ArgK PF03308.11 267 0.00019 11.6 0.1 1 2 1.6e-05 0.00056 10.1 0.1 37 66 11 40 3 45 0.88 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 ArgK PF03308.11 267 0.00019 11.6 0.1 2 2 0.071 2.5 -1.8 0.0 154 174 88 107 63 144 0.54 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_31 - 92 zinc_ribbon_5 PF13719.1 37 4.1e-06 17.8 2.9 1 1 3.2e-07 1.1e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 221 ATP_bind_1 PF03029.12 238 0.00029 11.8 0.2 1 1 0.00015 0.0052 7.7 0.2 6 40 13 47 10 115 0.83 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_32 - 213 HTH_17 PF12728.2 51 6.3e-05 14.7 0.1 1 2 0.0095 0.33 2.8 0.0 16 29 89 102 88 112 0.85 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_32 - 213 HTH_17 PF12728.2 51 6.3e-05 14.7 0.1 2 2 0.00013 0.0046 8.7 0.0 5 25 187 207 185 209 0.91 # 18360 # 18998 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 1_31 - 92 Zn_Tnp_IS1595 PF12760.2 46 6.3e-05 14.2 2.3 1 1 3.4e-06 0.00012 13.4 2.3 21 46 8 38 5 38 0.74 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 221 ArsA_ATPase PF02374.10 305 2.4e-09 28.0 0.1 1 1 1.2e-10 4.3e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_31 - 92 DUF2387 PF09526.5 71 6.1e-05 14.4 0.2 1 1 2.3e-06 7.9e-05 14.0 0.2 10 47 7 47 5 72 0.76 # 17293 # 17568 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_33 - 221 AAA_31 PF13614.1 157 2.8e-07 22.0 0.0 1 2 8.5e-07 3e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_33 - 221 AAA_31 PF13614.1 157 2.8e-07 22.0 0.0 2 2 0.0021 0.074 4.4 0.0 111 151 73 112 63 115 0.83 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_24 - 171 Ribosomal_L20 PF00453.13 108 2.8e-05 15.5 0.0 1 1 1.4e-06 4.8e-05 14.7 0.0 45 98 72 126 51 133 0.86 # 12692 # 13204 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.534 1_33 - 221 GTP_EFTU PF00009.22 188 8.3e-08 23.3 0.1 1 1 2.6e-09 9.3e-08 23.1 0.1 15 139 15 153 6 211 0.72 # 19379 # 20041 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7fb4bf4b-843f-4ea9-b4ff-5c0bfa80a699 # Target file: checkm_output/bins/pm1899/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1899/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7fb4bf4b-843f-4ea9-b4ff-5c0bfa80a699 checkm_output/bins/pm1899/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:53 2017 # [ok]