# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 344 KaiC PF06745.8 227 0.00038 12.1 0.0 1 1 8.7e-06 0.00068 11.3 0.0 6 37 150 181 147 187 0.90 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 3_7 - 52 Zn_Tnp_IS1 PF03811.8 36 3.6e-22 70.2 2.7 1 1 1.1e-23 4.2e-22 70.0 2.7 1 36 1 36 1 36 0.99 # 6203 # 6358 # 1 # ID=3_7;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 4_1 - 81 Zn_Tnp_IS1 PF03811.8 36 1.1e-14 46.2 1.8 1 1 6.9e-16 2.7e-14 45.0 1.8 12 36 1 25 1 25 0.96 # 3 # 245 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 2_13 - 294 RepC PF06504.6 283 6.6e-165 539.4 0.0 1 1 9.7e-167 7.5e-165 539.2 0.0 5 282 3 278 1 279 0.99 # 11191 # 12072 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 2_24 - 111 HTH_IclR PF09339.5 52 6.5e-07 21.5 0.2 1 1 3.3e-08 2.6e-06 19.6 0.2 7 49 20 63 5 66 0.87 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_35 - 344 ABC_tran PF00005.22 137 4.2e-05 16.4 0.0 1 1 1.5e-06 0.00012 15.0 0.0 7 32 159 184 155 226 0.85 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_32 - 302 rve_3 PF13683.1 67 5.4e-20 63.3 0.1 1 1 2.4e-21 1.9e-19 61.6 0.0 2 67 216 281 215 281 0.98 # 21827 # 22732 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.551 1_2 - 215 HTH_38 PF13936.1 44 0.0059 8.8 5.9 1 2 0.062 4.8 -0.5 0.0 3 20 81 98 79 99 0.86 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_2 - 215 HTH_38 PF13936.1 44 0.0059 8.8 5.9 2 2 1.6e-05 0.0013 10.9 0.2 28 43 191 206 171 207 0.80 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_3 - 207 MobB PF03205.9 140 2e-06 20.1 0.4 1 1 2.7e-07 1.1e-05 17.8 0.1 10 104 12 88 2 104 0.68 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 MobB PF03205.9 140 9.6e-05 14.7 0.0 1 1 4.3e-06 0.00017 13.9 0.0 2 42 165 204 164 227 0.86 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 2_24 - 111 HTH_34 PF13601.1 80 8.1e-05 15.2 0.0 1 1 1.6e-06 0.00013 14.6 0.0 2 48 18 66 17 69 0.92 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_24 - 111 MarR PF01047.17 59 3.1e-05 16.2 0.0 1 1 8.5e-07 6.6e-05 15.2 0.0 6 51 19 66 15 68 0.88 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_16 - 79 TIGR03302 TIGR03302 239 7.3e-05 14.6 0.3 1 1 1e-06 8.2e-05 14.4 0.3 3 53 4 52 2 69 0.83 # 14226 # 14462 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.519 2_15 - 260 DUF3584 PF12128.3 1201 0.091 2.5 19.6 1 1 0.0029 0.23 1.2 19.6 311 508 41 244 38 250 0.75 # 13434 # 14213 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_24 - 111 TetR_N PF00440.18 47 5.3e-05 15.4 0.6 1 2 0.066 5.2 -0.5 0.3 18 30 3 15 3 17 0.73 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_24 - 111 TetR_N PF00440.18 47 5.3e-05 15.4 0.6 2 2 2.6e-06 0.0002 13.6 0.0 6 36 22 52 19 54 0.95 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_3 - 207 CbiA PF01656.18 195 8.2e-29 92.9 1.6 1 1 2.7e-30 2.1e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_10 - 281 Rep_3 PF01051.16 222 1.2e-23 76.4 7.1 1 1 2.1e-25 1.7e-23 75.9 7.1 5 222 10 256 8 256 0.85 # 5412 # 6254 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_32 - 302 rve PF00665.21 120 3.9e-25 80.9 0.1 1 1 1.1e-26 8.8e-25 79.7 0.0 3 119 123 243 121 244 0.96 # 21827 # 22732 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.551 1_35 - 344 AAA_23 PF13476.1 202 0.00027 13.8 0.1 1 1 6.3e-06 0.00049 13.0 0.1 21 38 165 182 152 185 0.88 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 AAA_24 PF13479.1 213 0.00049 12.3 0.6 1 2 1.7e-05 0.0013 10.9 0.1 12 88 11 95 3 99 0.81 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 AAA_24 PF13479.1 213 0.00049 12.3 0.6 2 2 0.078 6.1 -1.1 0.0 168 206 118 156 115 164 0.79 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 Zeta_toxin PF06414.7 201 1.2e-05 17.0 0.0 1 1 2.5e-07 1.9e-05 16.3 0.0 6 59 153 208 148 232 0.81 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 AAA_30 PF13604.1 196 0.00027 13.1 0.4 1 1 7.4e-06 0.00058 12.0 0.1 26 106 10 88 2 97 0.75 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_33 - 122 CPSase_L_D3 PF02787.14 123 0.0004 12.7 0.2 1 2 0.0027 0.21 3.9 0.0 5 31 11 37 8 49 0.85 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_33 - 122 CPSase_L_D3 PF02787.14 123 0.0004 12.7 0.2 2 2 0.00031 0.024 7.0 0.1 42 80 76 112 73 117 0.89 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_33 - 122 HTH_Tnp_1 PF01527.15 76 2.9e-21 67.8 1.1 1 1 9.7e-23 3.8e-21 67.5 0.6 2 74 8 87 7 89 0.89 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_1 - 105 HTH_Tnp_1 PF01527.15 76 5.7e-06 18.8 0.1 1 1 2.1e-07 8.3e-06 18.3 0.1 2 72 7 90 6 94 0.78 # 1 # 315 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_36 - 612 TraG-D_C PF12696.2 128 2e-27 88.2 0.0 1 1 4.3e-29 3.4e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 25384 # 27219 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_3 - 207 MipZ PF09140.6 261 1.4e-14 46.3 0.9 1 2 1.3e-11 1e-09 30.4 0.0 2 47 3 47 2 57 0.88 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 MipZ PF09140.6 261 1.4e-14 46.3 0.9 2 2 8.2e-07 6.4e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_2 - 308 DDE_Tnp_1 PF01609.16 213 2.2e-23 75.4 0.7 1 1 4e-25 3.1e-23 74.9 0.7 4 207 115 288 112 293 0.86 # 434 # 1357 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 2_14 - 63 Sigma70_r4 PF04545.11 50 0.00024 13.0 0.2 1 1 5.2e-06 0.0004 12.3 0.2 18 35 40 57 21 58 0.85 # 13105 # 13293 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 2_24 - 111 Rrf2 PF02082.15 83 6.3e-06 18.9 0.0 1 1 1.7e-07 1.3e-05 17.8 0.0 23 59 31 66 3 69 0.83 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_9 - 639 zf-C4_Topoisom PF01396.14 39 0.00075 11.6 1.3 1 1 2.4e-05 0.0018 10.4 1.3 4 21 556 571 553 582 0.78 # 6710 # 8626 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 1_3 - 207 cobW PF02492.14 178 0.00019 13.4 0.2 1 2 1.8e-05 0.0014 10.6 0.0 10 38 12 41 3 47 0.86 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 cobW PF02492.14 178 0.00019 13.4 0.2 2 2 0.019 1.5 0.7 0.1 114 146 115 147 71 170 0.78 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 AAA_16 PF13191.1 185 0.00087 11.8 0.0 1 1 1.5e-05 0.0012 11.4 0.0 22 54 161 194 151 300 0.75 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 AAA_22 PF13401.1 131 0.00046 12.9 0.0 1 1 1e-05 0.0008 12.1 0.0 5 30 164 189 160 241 0.69 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_10 - 281 NUMOD1 PF07453.8 37 0.0073 8.8 5.8 1 2 0.06 4.7 -0.1 0.0 21 31 92 102 90 103 0.82 # 5412 # 6254 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_10 - 281 NUMOD1 PF07453.8 37 0.0073 8.8 5.8 2 2 5e-05 0.0039 9.7 0.6 1 29 155 188 155 190 0.84 # 5412 # 6254 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_35 - 344 AAA_29 PF13555.1 62 0.00012 14.2 0.0 1 1 3.3e-06 0.00026 13.1 0.0 21 43 161 183 149 186 0.83 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 3_1 - 105 HTH_Tnp_IS630 PF01710.11 120 0.00059 12.1 0.0 1 1 2.2e-05 0.00084 11.6 0.0 3 41 12 52 10 61 0.86 # 1 # 315 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 4_1 - 81 HTH_Tnp_IS630 PF01710.11 120 0.00062 12.0 0.0 1 1 2e-05 0.00079 11.7 0.0 9 42 43 76 37 80 0.91 # 3 # 245 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 2_24 - 111 B-block_TFIIIC PF04182.7 75 0.00081 11.8 0.0 1 1 1.3e-05 0.00099 11.6 0.0 4 52 18 66 15 84 0.90 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_3 - 207 SRP54 PF00448.17 196 8.2e-05 14.6 0.4 1 1 3.6e-06 0.00028 12.9 0.3 11 54 12 50 2 142 0.73 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_2 - 215 HTH_32 PF13565.1 77 0.001 12.4 3.1 1 1 1.3e-05 0.001 12.4 1.5 8 51 149 188 139 206 0.72 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 2_27 - 498 A2L_zn_ribbon PF08792.5 33 0.0064 8.6 3.6 1 2 0.004 0.32 3.2 0.5 5 29 75 100 73 101 0.85 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_27 - 498 A2L_zn_ribbon PF08792.5 33 0.0064 8.6 3.6 2 2 0.00068 0.053 5.7 0.1 2 13 439 450 439 453 0.85 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_13 - 294 GntR PF00392.16 64 0.00028 12.9 0.5 1 2 0.075 5.8 -0.9 0.0 40 51 108 119 102 120 0.80 # 11191 # 12072 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 2_13 - 294 GntR PF00392.16 64 0.00028 12.9 0.5 2 2 1.6e-05 0.0012 10.9 0.1 31 55 238 262 235 268 0.87 # 11191 # 12072 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_16 - 81 HTH_3 PF01381.17 55 1.9e-05 17.1 0.0 1 1 4.5e-07 3.5e-05 16.2 0.0 1 24 10 33 10 35 0.90 # 9607 # 9849 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_2 - 215 HTH_23 PF13384.1 50 1e-07 24.0 0.1 1 1 1.3e-08 2.6e-07 22.8 0.1 5 40 171 206 167 212 0.91 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_33 - 122 HTH_23 PF13384.1 50 1.8e-07 23.3 0.1 1 1 1.8e-08 3.6e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_25 - 246 HTH_23 PF13384.1 50 9.5e-06 17.8 0.4 1 1 4.9e-07 9.5e-06 17.8 0.4 2 37 171 206 170 216 0.90 # 19607 # 20344 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 4_1 - 81 HTH_23 PF13384.1 50 1.3e-05 17.4 0.0 1 1 1.1e-06 2.1e-05 16.7 0.0 7 40 42 75 40 79 0.93 # 3 # 245 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 1_3 - 207 Fer4_NifH PF00142.13 273 1.2e-06 20.4 0.0 1 1 2.8e-08 2.2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_2 - 215 HTH_7 PF02796.10 45 2e-08 26.6 0.3 1 2 0.00081 0.032 6.8 0.0 2 26 79 104 79 105 0.86 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_2 - 215 HTH_7 PF02796.10 45 2e-08 26.6 0.3 2 2 4.2e-07 1.6e-05 17.3 0.0 1 38 165 200 165 200 0.96 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 2_25 - 246 HTH_7 PF02796.10 45 6.3e-08 25.0 0.1 1 1 3.8e-09 1.5e-07 23.8 0.1 8 44 173 209 168 210 0.87 # 19607 # 20344 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 2_27 - 498 Ribosomal_S27e PF01667.12 55 0.00041 12.5 1.1 1 1 1.4e-05 0.0011 11.1 1.1 5 33 71 99 68 104 0.90 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_16 - 81 HTH_19 PF12844.2 64 0.00021 13.9 0.1 1 1 3.4e-06 0.00026 13.6 0.1 3 25 9 31 7 62 0.84 # 9607 # 9849 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 2_27 - 498 zinc_ribbon_4 PF13717.1 36 0.018 7.4 5.2 1 2 0.00049 0.038 6.3 0.1 2 14 73 85 73 87 0.84 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_27 - 498 zinc_ribbon_4 PF13717.1 36 0.018 7.4 5.2 2 2 0.0064 0.5 2.8 0.0 5 14 95 104 94 111 0.81 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_33 - 122 HTH_29 PF13551.1 112 1.8e-05 17.5 0.2 1 1 6.8e-07 2.7e-05 16.9 0.2 11 71 29 88 18 109 0.67 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_1 - 105 HTH_29 PF13551.1 112 0.00037 13.2 0.1 1 1 1.1e-05 0.00044 13.0 0.1 2 63 18 84 17 100 0.79 # 1 # 315 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_3 - 207 DUF1611 PF07755.6 301 2.9e-06 18.6 0.3 1 1 5.8e-08 4.5e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 612 TrwB_AAD_bind PF10412.4 386 3.8e-21 67.6 0.0 1 1 7.6e-23 6e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 25384 # 27219 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_3 - 207 TIGR01968 TIGR01968 261 3.1e-12 38.6 1.6 1 2 1e-09 8e-08 24.1 0.0 2 39 2 39 1 47 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 TIGR01968 TIGR01968 261 3.1e-12 38.6 1.6 2 2 1.2e-06 9.6e-05 14.0 0.3 109 179 73 145 56 196 0.76 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 4_1 - 81 HTH_Tnp_IS1 PF12759.2 46 1.1e-30 97.4 0.3 1 1 2.3e-32 1.8e-30 96.8 0.3 1 45 32 76 32 77 0.98 # 3 # 245 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 1_35 - 344 DUF258 PF03193.11 161 0.00016 13.5 0.0 1 1 3.2e-06 0.00025 12.8 0.0 31 59 158 187 141 220 0.80 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 3_1 - 105 HTH_28 PF13518.1 52 6.4e-11 34.7 0.1 1 1 5.7e-12 8.9e-11 34.2 0.1 1 38 16 55 16 70 0.90 # 1 # 315 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_33 - 122 HTH_28 PF13518.1 52 1.4e-08 27.2 0.5 1 1 2e-09 3e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 215 HTH_28 PF13518.1 52 1.7e-05 17.4 0.2 1 1 3.4e-06 5.3e-05 15.8 0.2 4 35 175 206 172 206 0.92 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 4_1 - 81 HTH_28 PF13518.1 52 7.3e-05 15.3 0.0 1 1 7.3e-06 0.00011 14.7 0.0 4 34 44 74 42 77 0.91 # 3 # 245 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 2_25 - 246 HTH_28 PF13518.1 52 0.00024 13.7 0.7 1 1 1.6e-05 0.00024 13.7 0.7 1 33 175 207 175 209 0.95 # 19607 # 20344 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 2_24 - 111 HTH_24 PF13412.1 48 0.00012 14.1 0.0 1 1 2.7e-06 0.00021 13.3 0.0 20 47 35 62 25 63 0.89 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_3 - 207 LpxK PF02606.9 326 4.2e-05 15.1 0.1 1 1 8.4e-07 6.5e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 DEAD PF00270.24 169 0.00016 13.7 0.0 1 1 3.6e-06 0.00028 13.0 0.0 6 33 154 182 150 246 0.77 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_16 - 81 HTH_31 PF13560.1 64 6.8e-07 22.0 0.1 1 1 1e-08 7.9e-07 21.8 0.1 5 36 9 40 6 61 0.85 # 9607 # 9849 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 2_13 - 294 HTH_36 PF13730.1 55 0.00082 12.1 0.0 1 1 2.5e-05 0.0019 10.9 0.0 23 55 230 261 224 261 0.84 # 11191 # 12072 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_35 - 344 T2SE PF00437.15 272 1.7e-53 173.8 0.0 1 1 2.7e-55 2.1e-53 173.4 0.0 12 267 25 312 16 316 0.89 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 UPF0079 PF02367.12 123 0.00033 12.8 0.0 1 1 7.5e-06 0.00059 12.1 0.0 7 39 155 187 149 196 0.83 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 AAA_17 PF13207.1 121 3.6e-05 17.2 0.0 1 1 2e-06 7.9e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 AAA_17 PF13207.1 121 6.6e-05 16.3 0.0 1 1 2.3e-06 8.9e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_12 - 276 AAA_25 PF13481.1 194 3.6e-36 116.9 0.0 1 1 1.3e-37 5e-36 116.4 0.0 15 193 9 180 3 181 0.87 # 10377 # 11204 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_35 - 344 AAA_25 PF13481.1 194 0.00018 13.5 0.0 1 1 6.4e-06 0.00025 13.0 0.0 21 51 151 181 139 248 0.87 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_3 - 207 VirC1 PF07015.6 231 5.8e-15 47.5 0.2 1 1 1.5e-16 1.2e-14 46.5 0.2 1 131 1 123 1 174 0.79 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_24 - 111 Penicillinase_R PF03965.11 115 0.00082 12.1 0.0 1 1 1.2e-05 0.00095 11.8 0.0 26 70 37 81 15 99 0.78 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_33 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00027 12.7 1.6 1 2 7.2e-06 0.00056 11.7 0.1 7 42 8 44 8 46 0.92 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_33 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00027 12.7 1.6 2 2 0.081 6.3 -1.3 0.0 24 34 53 62 51 64 0.81 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_1 - 105 DUF1153 PF06627.6 90 3.5e-05 16.2 0.1 1 1 7.2e-07 5.6e-05 15.6 0.1 33 62 12 41 5 58 0.79 # 1 # 315 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.495 1_35 - 344 AAA_33 PF13671.1 143 1.2e-05 17.7 0.0 1 2 0.07 5.4 -0.6 0.0 7 39 96 127 93 164 0.78 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_35 - 344 AAA_33 PF13671.1 143 1.2e-05 17.7 0.0 2 2 6.8e-07 5.3e-05 15.7 0.0 2 25 166 191 165 274 0.71 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_33 - 122 CENP-B_N PF04218.8 53 2.5e-06 19.5 0.0 1 1 6e-08 4.7e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 22690 # 23055 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_3 - 207 ArgK PF03308.11 267 8.5e-05 13.9 0.0 1 1 2.5e-06 0.0002 12.7 0.0 39 72 12 45 5 53 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 612 T4SS-DNA_transf PF02534.9 469 6.4e-146 479.1 0.0 1 1 1e-147 7.8e-146 478.8 0.0 2 461 102 571 101 578 0.98 # 25384 # 27219 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_3 - 207 NTPase_1 PF03266.10 168 0.00029 13.1 0.1 1 1 1.1e-05 0.00089 11.5 0.0 7 58 10 66 5 94 0.80 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 4_2 - 119 DDE_Tnp_IS1 PF03400.8 131 3.6e-73 236.4 1.0 1 1 5.1e-75 4e-73 236.2 1.0 7 125 1 119 1 119 1.00 # 290 # 646 # 1 # ID=4_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 3_7 - 52 zinc_ribbon_5 PF13719.1 37 0.0012 11.0 2.4 1 1 9.2e-05 0.0036 9.5 2.4 15 36 19 40 5 41 0.65 # 6203 # 6358 # 1 # ID=3_7;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_27 - 498 zinc_ribbon_5 PF13719.1 37 0.0017 10.6 2.7 1 2 0.00063 0.024 6.8 0.0 2 14 73 85 72 87 0.83 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_27 - 498 zinc_ribbon_5 PF13719.1 37 0.0017 10.6 2.7 2 2 0.0097 0.38 3.0 0.0 5 14 95 104 94 113 0.81 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_3 - 207 ATP_bind_1 PF03029.12 238 3.7e-05 15.9 0.0 1 1 1.7e-06 6.5e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 344 ATP_bind_1 PF03029.12 238 0.00035 12.7 0.0 1 1 1.4e-05 0.00053 12.1 0.0 2 23 169 190 168 206 0.87 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 2_9 - 639 Toprim_Crpt PF13342.1 62 7.5e-19 59.8 2.3 1 1 9.6e-21 7.5e-19 59.8 2.3 1 60 573 632 573 634 0.92 # 6710 # 8626 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 2_11 - 74 HTH_17 PF12728.2 51 1.3e-07 24.4 0.1 1 1 5.5e-09 2.1e-07 23.7 0.1 9 51 15 59 7 59 0.83 # 10151 # 10372 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.500 1_2 - 215 HTH_17 PF12728.2 51 4.6e-05 16.2 0.0 1 2 0.019 0.75 2.7 0.0 16 29 89 102 88 112 0.85 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_2 - 215 HTH_17 PF12728.2 51 4.6e-05 16.2 0.0 2 2 7.3e-05 0.0029 10.5 0.0 5 27 187 209 185 213 0.89 # 945 # 1589 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 2_27 - 498 Zn-ribbon_8 PF09723.5 42 0.029 7.0 9.5 1 2 0.00051 0.04 6.5 5.2 7 35 75 101 75 105 0.89 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_27 - 498 Zn-ribbon_8 PF09723.5 42 0.029 7.0 9.5 2 2 0.016 1.3 1.7 0.1 25 37 439 450 430 459 0.71 # 20776 # 22269 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_2 - 308 DDE_Tnp_1_5 PF13737.1 112 8.1e-48 153.9 0.2 1 1 4.6e-49 3.6e-47 151.8 0.0 1 112 19 130 19 130 0.96 # 434 # 1357 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 2_24 - 111 MarR_2 PF12802.2 62 2.3e-06 19.8 0.0 1 1 4.9e-08 3.8e-06 19.1 0.0 10 55 21 66 11 69 0.83 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_24 - 111 HTH_5 PF01022.15 47 1.5e-08 26.8 0.1 1 1 3.2e-10 2.5e-08 26.1 0.0 2 47 16 64 15 64 0.94 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_24 - 111 TrmB PF01978.14 68 2.3e-07 23.0 0.0 1 1 4e-09 3.1e-07 22.6 0.0 13 64 21 75 15 77 0.83 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 2_28 - 101 TIGR01455 TIGR01455 442 1.9e-33 108.0 0.5 1 1 2.9e-35 2.3e-33 107.7 0.5 1 77 6 81 6 83 0.96 # 22445 # 22747 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.578 1_26 - 918 AAA_10 PF12846.2 304 7.1e-36 116.7 0.0 1 1 3.1e-37 1.2e-35 115.9 0.0 3 294 539 825 538 832 0.93 # 15025 # 17778 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_3 - 207 AAA_10 PF12846.2 304 1e-05 17.6 0.0 1 1 4.7e-07 1.8e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_24 - 111 HTH_20 PF12840.2 61 4.2e-16 51.1 0.2 1 1 7.1e-18 5.6e-16 50.8 0.2 3 61 9 69 7 69 0.97 # 19127 # 19459 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_3 - 207 ArsA_ATPase PF02374.10 305 2.2e-08 26.0 0.2 1 1 4.8e-10 3.8e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 AAA_31 PF13614.1 157 1.4e-08 27.4 0.3 1 2 9.4e-09 7.3e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_3 - 207 AAA_31 PF13614.1 157 1.4e-08 27.4 0.3 2 2 0.0047 0.36 3.3 0.0 115 152 74 109 58 114 0.83 # 1875 # 2495 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_29 - 272 Pterin_bind PF00809.17 210 2.2e-60 196.1 0.0 1 1 3.4e-62 2.6e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 22834 # 23649 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.609 1_35 - 344 IstB_IS21 PF01695.12 178 0.00044 12.2 0.0 1 1 1.1e-05 0.00087 11.3 0.0 44 66 160 182 136 186 0.87 # 24350 # 25381 # 1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.410 1_32 - 302 HTH_21 PF13276.1 60 4.8e-19 60.8 2.0 1 2 2.7e-19 2.1e-17 55.5 0.6 6 57 49 106 45 109 0.79 # 21827 # 22732 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.551 1_32 - 302 HTH_21 PF13276.1 60 4.8e-19 60.8 2.0 2 2 0.0032 0.25 4.0 0.0 11 33 264 288 255 301 0.77 # 21827 # 22732 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.551 2_11 - 74 Phage_AlpA PF05930.7 51 5.4e-21 66.7 0.1 1 1 8e-23 6.2e-21 66.5 0.1 3 51 7 55 5 55 0.97 # 10151 # 10372 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.500 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/646e7611-9052-4f1f-9ce9-7ed020df9367 # Target file: checkm_output/bins/pm1893/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1893/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/646e7611-9052-4f1f-9ce9-7ed020df9367 checkm_output/bins/pm1893/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:50 2017 # [ok]