# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 452 AAA_23 PF13476.1 202 4.7e-08 22.5 1.7 1 1 1.4e-08 8.6e-08 21.6 1.7 2 88 5 140 4 269 0.68 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 SMC_N PF02463.14 220 1.5e-06 16.5 1.9 1 3 0.082 0.49 -1.6 0.0 5 21 5 20 2 27 0.74 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 SMC_N PF02463.14 220 1.5e-06 16.5 1.9 2 3 7.5e-06 4.5e-05 11.6 0.0 28 49 49 73 36 105 0.83 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 SMC_N PF02463.14 220 1.5e-06 16.5 1.9 3 3 0.004 0.024 2.7 0.1 156 203 308 358 291 377 0.81 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 AAA_21 PF13304.1 303 3.3e-47 150.7 1.8 1 1 5.5e-48 3.3e-47 150.7 1.8 2 302 48 357 47 358 0.96 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 TIGR02211 TIGR02211 221 1.3e-05 13.4 0.9 1 2 0.0019 0.011 3.8 0.1 11 54 25 68 17 86 0.83 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 TIGR02211 TIGR02211 221 1.3e-05 13.4 0.9 2 2 9e-05 0.00054 8.1 0.1 153 206 304 358 298 366 0.85 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 AAA_15 PF13175.1 415 6.4e-09 24.1 5.7 1 2 2.2e-07 1.3e-06 16.5 1.2 3 45 4 70 3 216 0.71 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 AAA_15 PF13175.1 415 6.4e-09 24.1 5.7 2 2 9.5e-05 0.00057 7.8 2.8 291 411 245 353 104 357 0.70 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 511 UBA_4 PF14555.1 43 7.5e-06 14.5 0.0 1 1 2.4e-06 1.5e-05 13.5 0.0 16 36 448 468 441 469 0.91 # 675 # 2207 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_5 - 452 AAA_13 PF13166.1 712 4.2e-05 11.0 0.8 1 2 0.0038 0.023 1.9 0.1 21 39 50 68 34 98 0.87 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 1_5 - 452 AAA_13 PF13166.1 712 4.2e-05 11.0 0.8 2 2 8e-05 0.00048 7.5 0.1 540 600 319 389 306 402 0.75 # 2721 # 4076 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b827bf85-6aaa-4b52-a35f-a4005f7e841a # Target file: checkm_output/bins/pm1888/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1888/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b827bf85-6aaa-4b52-a35f-a4005f7e841a checkm_output/bins/pm1888/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:30 2017 # [ok]