# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 528 ABC_tran PF00005.22 137 6.7e-24 74.1 0.1 1 1 8.4e-25 6.7e-24 74.1 0.1 5 136 345 477 342 478 0.92 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 Sigma54_activat PF00158.21 168 2.7e-05 13.0 0.1 1 1 9.1e-06 7.3e-05 11.6 0.1 19 57 348 385 336 399 0.74 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_23 PF13476.1 202 0.00012 11.8 15.0 1 2 0.032 0.25 0.9 0.1 151 197 74 120 26 125 0.63 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_23 PF13476.1 202 0.00012 11.8 15.0 2 2 1.1e-05 9.1e-05 12.2 10.4 17 53 348 385 330 523 0.53 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 Zeta_toxin PF06414.7 201 8.7e-06 14.2 0.1 1 1 2.7e-06 2.2e-05 12.9 0.1 17 49 352 385 339 388 0.90 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 SMC_N PF02463.14 220 9.3e-13 37.2 3.1 1 1 5e-11 4e-10 28.6 3.1 4 213 334 524 331 527 0.73 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_21 PF13304.1 303 1.3e-08 24.4 24.8 1 3 0.004 0.032 3.4 6.3 17 107 27 125 3 276 0.61 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_21 PF13304.1 303 1.3e-08 24.4 24.8 2 3 2.2e-07 1.7e-06 17.4 4.4 1 80 353 427 353 452 0.60 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_21 PF13304.1 303 1.3e-08 24.4 24.8 3 3 7.5e-06 6e-05 12.4 2.4 180 303 425 512 404 512 0.68 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA PF00004.24 132 4.5e-05 13.0 0.7 1 1 2.8e-05 0.00022 10.8 0.0 3 31 356 386 354 415 0.80 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 TIGR00064 TIGR00064 279 0.0002 9.6 4.6 1 2 0.047 0.38 -1.1 0.1 18 55 84 122 73 145 0.66 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 TIGR00064 TIGR00064 279 0.0002 9.6 4.6 2 2 1.1e-05 8.8e-05 10.8 1.0 48 100 320 371 296 385 0.63 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_22 PF13401.1 131 4.6e-05 13.0 0.0 1 1 1.7e-05 0.00014 11.4 0.0 6 25 353 372 348 435 0.83 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_29 PF13555.1 62 3.9e-07 19.0 0.2 1 1 1e-07 8.3e-07 17.9 0.2 12 39 342 367 333 374 0.77 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_18 PF13238.1 129 4.7e-06 16.3 5.7 1 2 0.1 0.8 -0.6 0.0 48 82 86 121 70 150 0.56 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_18 PF13238.1 129 4.7e-06 16.3 5.7 2 2 3.6e-06 2.9e-05 13.8 3.7 2 23 355 396 355 523 0.60 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 Sigma54_activ_2 PF14532.1 138 8.8e-06 15.2 0.0 1 1 2.8e-06 2.2e-05 13.9 0.0 24 58 354 388 344 419 0.82 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 DUF2075 PF09848.4 352 1.4e-05 13.5 0.1 1 1 3.3e-06 2.6e-05 12.6 0.1 2 67 352 420 351 522 0.64 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 T2SE PF00437.15 272 1.6e-05 13.2 0.6 1 1 4.4e-06 3.5e-05 12.1 0.6 130 160 353 382 314 387 0.81 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 NACHT PF05729.7 166 7.1e-05 11.8 0.1 1 1 2.5e-05 0.0002 10.4 0.1 3 21 354 372 352 381 0.82 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 UPF0079 PF02367.12 123 0.00045 9.2 6.5 1 3 0.035 0.28 0.2 0.1 59 96 298 337 287 347 0.67 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 UPF0079 PF02367.12 123 0.00045 9.2 6.5 2 3 1.5e-05 0.00012 11.1 0.3 11 43 347 379 338 385 0.83 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 UPF0079 PF02367.12 123 0.00045 9.2 6.5 3 3 0.097 0.78 -1.2 0.1 81 109 491 519 484 525 0.81 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_17 PF13207.1 121 1.7e-05 15.1 0.6 1 1 7.5e-06 6e-05 13.2 0.4 3 20 355 372 353 391 0.89 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 TIGR02211 TIGR02211 221 1.5e-16 49.5 0.9 1 1 1.9e-16 1.5e-15 46.3 0.9 24 211 344 517 315 524 0.81 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_25 PF13481.1 194 1e-06 17.6 0.0 1 1 2.4e-07 1.9e-06 16.7 0.0 29 66 347 390 339 414 0.79 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_14 PF13173.1 128 2.8e-05 13.4 4.9 1 3 0.078 0.63 -0.7 0.0 65 81 92 107 37 132 0.68 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_14 PF13173.1 128 2.8e-05 13.4 4.9 2 3 6.1e-06 4.9e-05 12.6 0.1 4 44 353 393 350 449 0.79 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_14 PF13173.1 128 2.8e-05 13.4 4.9 3 3 0.05 0.4 -0.0 0.1 19 42 488 511 485 525 0.74 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 APS_kinase PF01583.15 157 8.2e-06 14.9 0.1 1 1 1.9e-06 1.5e-05 14.0 0.1 1 30 350 379 350 388 0.85 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 NTPase_1 PF03266.10 168 1.1e-05 14.5 0.5 1 1 1.4e-06 1.1e-05 14.5 0.5 3 36 355 390 353 395 0.82 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_13 PF13166.1 712 1.5e-06 16.2 1.3 1 2 1.8e-07 1.5e-06 16.2 1.3 2 43 335 378 334 402 0.74 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_2 - 528 AAA_13 PF13166.1 712 1.5e-06 16.2 1.3 2 2 0.00083 0.0067 4.1 0.7 529 577 469 514 460 519 0.90 # 1110 # 2693 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/05fe7199-c8bb-48c0-a2eb-b31936bec328 # Target file: checkm_output/bins/pm1879/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1879/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/05fe7199-c8bb-48c0-a2eb-b31936bec328 checkm_output/bins/pm1879/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:20 2017 # [ok]