# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 340 HTH_AsnC-type PF13404.1 42 6.1e-06 13.8 0.5 1 2 0.074 0.22 -0.8 0.0 20 33 150 163 148 165 0.85 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_AsnC-type PF13404.1 42 6.1e-06 13.8 0.5 2 2 1.6e-05 4.7e-05 11.0 0.1 18 36 304 322 304 324 0.93 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_DeoR PF08220.7 57 6.3e-06 13.7 0.0 1 2 0.056 0.17 -0.4 0.0 12 28 145 161 142 170 0.84 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_DeoR PF08220.7 57 6.3e-06 13.7 0.0 2 2 1.7e-05 5.2e-05 10.8 0.0 16 33 305 322 303 326 0.94 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_38 PF13936.1 44 5.3e-06 14.0 0.0 1 2 0.019 0.057 1.1 0.0 14 35 141 162 138 171 0.79 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_38 PF13936.1 44 5.3e-06 14.0 0.0 2 2 3.8e-05 0.00011 9.8 0.0 9 40 292 323 289 325 0.89 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 Sigma70_r4_2 PF08281.7 54 1.7e-08 21.9 0.0 1 2 0.0094 0.028 2.0 0.0 23 41 144 162 139 166 0.84 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 Sigma70_r4_2 PF08281.7 54 1.7e-08 21.9 0.0 2 2 1.7e-07 5.2e-07 17.1 0.0 14 47 292 324 290 325 0.94 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 Terminase_5 PF06056.7 58 1.2e-06 16.1 0.0 1 1 1.2e-06 3.7e-06 14.5 0.0 1 35 291 325 291 329 0.95 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 GerE PF00196.14 58 7.1e-07 16.6 0.0 1 2 0.0008 0.0024 5.3 0.0 8 32 137 161 136 163 0.95 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 GerE PF00196.14 58 7.1e-07 16.6 0.0 2 2 6.3e-05 0.00019 8.8 0.0 11 36 296 321 290 325 0.88 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 Sigma70_r4 PF04545.11 50 2.9e-08 21.0 0.0 1 2 9.7e-05 0.00029 8.2 0.0 9 35 137 162 136 170 0.78 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 Sigma70_r4 PF04545.11 50 2.9e-08 21.0 0.0 2 2 1.9e-05 5.7e-05 10.5 0.0 10 39 294 322 290 329 0.79 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_32 PF13565.1 77 2.3e-05 13.2 1.0 1 2 0.052 0.16 0.9 0.0 40 62 233 253 184 261 0.77 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_32 PF13565.1 77 2.3e-05 13.2 1.0 2 2 0.00024 0.00073 8.4 0.2 32 77 290 324 256 324 0.56 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_3 PF01381.17 55 7.6e-07 17.0 0.0 1 2 0.0085 0.026 2.5 0.0 3 24 142 162 140 163 0.73 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_3 PF01381.17 55 7.6e-07 17.0 0.0 2 2 1.1e-05 3.2e-05 11.8 0.0 13 30 307 324 302 325 0.92 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_23 PF13384.1 50 1.2e-10 28.9 0.6 1 1 1.7e-10 5.1e-10 26.9 0.1 4 38 290 324 287 327 0.93 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_7 PF02796.10 45 5.6e-06 14.3 0.0 1 1 4.3e-06 1.3e-05 13.1 0.0 12 40 294 322 287 325 0.87 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_29 PF13551.1 112 6.7e-06 14.3 1.9 1 2 0.052 0.16 0.2 0.1 25 71 241 288 229 299 0.72 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_29 PF13551.1 112 6.7e-06 14.3 1.9 2 2 1e-05 3e-05 12.2 0.1 1 35 293 326 293 334 0.84 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_28 PF13518.1 52 1.1e-06 16.6 1.3 1 1 5.8e-07 1.7e-06 16.0 0.1 1 33 292 324 292 327 0.95 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_31 PF13560.1 64 3.5e-05 12.0 1.6 1 2 0.037 0.11 0.8 0.1 46 61 149 164 140 167 0.66 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_31 PF13560.1 64 3.5e-05 12.0 1.6 2 2 6.9e-05 0.00021 9.6 0.2 10 35 293 324 257 328 0.91 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_Tnp_ISL3 PF13542.1 52 1.3e-06 15.5 0.6 1 1 1.4e-06 4.1e-06 14.0 0.4 28 50 304 326 294 328 0.85 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_17 PF12728.2 51 3.5e-08 21.7 0.5 1 3 0.0011 0.0032 5.8 0.0 2 16 148 162 147 165 0.91 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_17 PF12728.2 51 3.5e-08 21.7 0.5 2 3 0.055 0.16 0.3 0.0 13 25 182 194 177 198 0.84 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_17 PF12728.2 51 3.5e-08 21.7 0.5 3 3 2.2e-05 6.7e-05 11.2 0.0 3 24 305 326 304 333 0.94 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_11 PF08279.7 55 1.9e-06 15.6 0.1 1 2 0.0034 0.01 3.6 0.0 15 28 146 160 138 169 0.83 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_11 PF08279.7 55 1.9e-06 15.6 0.1 2 2 6.3e-05 0.00019 9.1 0.0 17 34 305 322 302 326 0.90 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 LacI PF00356.16 46 5.3e-06 14.1 0.0 1 1 3.3e-06 9.9e-06 13.2 0.0 3 21 307 325 305 335 0.90 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 340 HTH_Crp_2 PF13545.1 76 8.4e-06 13.6 0.0 1 1 8.7e-06 2.6e-05 12.0 0.0 22 49 297 324 287 326 0.84 # 2404 # 3423 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6b0a1b59-8e11-4f2d-8937-48a072286e0f # Target file: checkm_output/bins/pm1876/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1876/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6b0a1b59-8e11-4f2d-8937-48a072286e0f checkm_output/bins/pm1876/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:17 2017 # [ok]