# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_3 - 332 ATP-synt_ab PF00006.20 215 0.00027 12.4 0.0 1 1 8.8e-06 0.00044 11.7 0.0 16 62 159 205 151 247 0.86 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 KaiC PF06745.8 227 8.5e-05 13.6 0.0 1 1 3e-06 0.00015 12.8 0.0 16 53 155 190 148 240 0.77 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 ABC_tran PF00005.22 137 7.8e-07 21.4 0.0 1 1 5e-08 1.2e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_10 - 867 ABC_tran PF00005.22 137 0.00034 12.9 0.0 1 1 4.6e-05 0.0011 11.2 0.0 14 38 494 518 481 550 0.83 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_23 - 199 HTH_22 PF13309.1 64 3.1e-06 18.9 0.1 1 1 1.7e-07 8.3e-06 17.5 0.1 45 62 168 185 166 187 0.92 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_5 - 422 HHH_5 PF14520.1 60 1.4e-07 23.6 0.6 1 1 7.4e-08 3.7e-06 19.0 0.6 8 55 181 278 177 282 0.65 # 3938 # 5203 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_3 - 332 Sigma54_activat PF00158.21 168 4.3e-06 18.2 0.0 1 1 3.1e-07 7.8e-06 17.4 0.0 14 54 150 190 138 213 0.82 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 Sigma54_activat PF00158.21 168 8.4e-05 14.0 0.4 1 1 9.4e-06 0.00024 12.6 0.4 8 130 480 600 473 606 0.79 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 FtsK_SpoIIIE PF01580.13 205 4.3e-07 21.5 0.0 1 1 5.1e-08 8.5e-07 20.5 0.0 38 64 158 184 139 191 0.81 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_10 - 867 FtsK_SpoIIIE PF01580.13 205 5.9e-06 17.8 0.0 1 1 8.1e-07 1.4e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_21 - 510 FtsK_SpoIIIE PF01580.13 205 0.00032 12.1 0.0 1 1 3.4e-05 0.00057 11.3 0.0 39 59 124 147 95 153 0.78 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_23 - 199 SpoIIID PF12116.3 82 2.1e-05 16.4 0.1 1 2 0.01 0.51 2.3 0.0 33 55 8 30 5 44 0.87 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 SpoIIID PF12116.3 82 2.1e-05 16.4 0.1 2 2 1.3e-05 0.00064 11.6 0.0 17 42 163 188 151 197 0.84 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_3 - 332 MobB PF03205.9 140 4.4e-06 18.4 1.9 1 1 1.5e-07 7.5e-06 17.6 0.3 2 39 160 196 159 201 0.83 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 Myosin_head PF00063.16 689 7.9e-05 12.7 0.0 1 1 2.2e-06 0.00011 12.2 0.0 84 110 157 183 147 209 0.90 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_23 - 199 TetR_N PF00440.18 47 9e-05 14.1 0.0 1 1 3.6e-06 0.00018 13.1 0.0 17 36 166 185 164 185 0.94 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_3 - 332 AAA_19 PF13245.1 76 0.00032 12.4 0.1 1 1 2.8e-05 0.0007 11.3 0.1 5 48 153 191 149 224 0.78 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 AAA_19 PF13245.1 76 0.0012 10.6 3.7 1 2 0.00056 0.014 7.2 0.2 2 75 485 551 484 552 0.75 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 1077 AAA_19 PF13245.1 76 0.0012 10.6 3.7 2 2 0.027 0.68 1.8 0.0 17 32 706 721 705 731 0.82 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_18 - 239 CbiA PF01656.18 195 1.4e-06 19.8 0.7 1 2 0.00041 0.021 6.1 0.1 1 19 3 21 3 24 0.89 # 12177 # 12893 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_18 - 239 CbiA PF01656.18 195 1.4e-06 19.8 0.7 2 2 6.6e-06 0.00033 12.0 0.0 110 165 89 142 33 168 0.77 # 12177 # 12893 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_2 - 240 Rep_3 PF01051.16 222 7.9e-44 141.8 0.4 1 1 1.8e-45 9.1e-44 141.6 0.4 2 213 8 227 7 233 0.92 # 1361 # 2080 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.438 4_1 - 235 rve PF00665.21 120 1.6e-13 42.7 0.1 1 2 0.015 0.74 1.9 0.0 78 102 27 49 6 54 0.84 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 235 rve PF00665.21 120 1.6e-13 42.7 0.1 2 2 6.1e-14 3e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 332 AAA_23 PF13476.1 202 0.00022 13.5 0.0 1 1 1.4e-05 0.00036 12.8 0.0 19 39 158 178 105 184 0.91 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_10 - 867 AAA_23 PF13476.1 202 0.0024 10.1 0.0 1 1 9.5e-05 0.0024 10.1 0.0 22 39 494 511 464 521 0.84 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_3 - 332 Zeta_toxin PF06414.7 201 7.8e-07 20.3 0.0 1 1 2.7e-08 1.3e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 AAA_30 PF13604.1 196 1e-53 173.7 7.6 1 1 1.5e-54 3.8e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 AAA_30 PF13604.1 196 7.6e-05 14.3 0.1 1 2 4.7e-05 0.0012 10.4 0.1 11 51 151 190 145 197 0.80 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_30 PF13604.1 196 7.6e-05 14.3 0.1 2 2 0.024 0.59 1.6 0.0 121 178 204 258 191 272 0.77 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 4_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00012 13.9 0.3 1 1 5.4e-06 0.00027 12.9 0.3 4 51 6 58 4 63 0.79 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_21 - 510 TraG-D_C PF12696.2 128 6.8e-22 69.7 0.0 1 1 2.2e-23 1.1e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 4_1 - 235 DDE_3 PF13358.1 146 0.00034 12.3 0.0 1 1 2.1e-05 0.001 10.7 0.0 32 90 82 141 59 146 0.87 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_23 - 199 Sigma70_r4 PF04545.11 50 0.00026 12.3 0.0 1 1 1.8e-05 0.00091 10.5 0.0 19 37 164 182 154 189 0.88 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_22 - 1077 AAA PF00004.24 132 1.7e-06 20.3 0.9 1 1 1.3e-07 6.4e-06 18.3 0.1 4 111 500 600 497 612 0.73 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 Parvo_NS1 PF01057.12 272 0.00043 11.1 0.0 1 1 1.4e-05 0.00072 10.4 0.0 104 138 148 182 140 188 0.90 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 Herpes_Helicase PF02689.9 819 1.1e-05 15.3 0.0 1 2 0.0014 0.069 2.7 0.0 173 208 539 574 515 584 0.81 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 1077 Herpes_Helicase PF02689.9 819 1.1e-05 15.3 0.0 2 2 9.2e-06 0.00046 9.9 0.0 739 782 850 894 831 914 0.80 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 199 MRP-L20 PF12824.2 164 1.5e-06 20.2 0.0 1 1 4e-08 2e-06 19.8 0.0 69 133 132 194 116 198 0.77 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_22 - 1077 Torsin PF06309.6 127 1e-05 17.3 0.0 1 1 6.1e-07 3.1e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 199 MerR_1 PF13411.1 69 1.7e-05 16.5 0.1 1 2 0.0073 0.37 2.6 0.0 45 66 78 99 75 102 0.83 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 MerR_1 PF13411.1 69 1.7e-05 16.5 0.1 2 2 1.6e-05 0.00078 11.2 0.0 2 29 167 194 166 198 0.87 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_3 - 332 cobW PF02492.14 178 1.1e-06 20.1 0.0 1 1 4.1e-08 2e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_16 PF13191.1 185 3.4e-07 22.3 0.0 1 1 3.4e-08 8.6e-07 21.0 0.0 24 61 158 195 149 274 0.82 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_10 - 867 AAA_16 PF13191.1 185 0.00049 12.0 0.0 1 1 0.00018 0.0045 8.9 0.0 25 47 492 514 481 574 0.85 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_3 - 332 AAA_22 PF13401.1 131 1.4e-07 23.7 0.0 1 1 1.8e-08 3e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_10 - 867 AAA_22 PF13401.1 131 5.4e-05 15.3 0.0 1 1 7.5e-05 0.0013 10.9 0.0 5 28 492 515 489 549 0.85 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_22 - 1077 AAA_22 PF13401.1 131 0.00032 12.8 0.2 1 1 0.00022 0.0037 9.4 0.2 4 125 494 598 490 603 0.81 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 AAA_29 PF13555.1 62 0.0005 11.6 0.0 1 1 2.3e-05 0.0012 10.4 0.0 19 43 157 178 145 188 0.75 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 4_1 - 235 HTH_32 PF13565.1 77 6.5e-07 22.1 0.2 1 1 1.1e-07 2.8e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_23 - 199 HTH_32 PF13565.1 77 9.4e-06 18.4 0.2 1 1 2.1e-06 5.3e-05 16.0 0.1 7 76 127 185 121 186 0.71 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_1 - 235 HTH_23 PF13384.1 50 3e-06 18.8 0.7 1 2 0.032 0.79 1.6 0.0 7 27 11 35 7 36 0.69 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 235 HTH_23 PF13384.1 50 3e-06 18.8 0.7 2 2 3.7e-06 9.3e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_23 - 199 HTH_23 PF13384.1 50 3.2e-06 18.7 0.0 1 1 5.1e-07 1.3e-05 16.8 0.0 10 37 158 185 150 188 0.82 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 HTH_7 PF02796.10 45 4.5e-17 53.7 0.1 1 1 3.3e-18 1.6e-16 51.9 0.0 1 44 144 188 144 189 0.98 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 HTH_29 PF13551.1 112 0.0005 12.2 2.1 1 1 0.00029 0.014 7.5 0.7 39 106 131 184 122 185 0.54 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_1 - 235 DDE_Tnp_IS66 PF03050.9 271 1.2e-12 39.5 0.3 1 1 3e-14 1.5e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 332 Arch_ATPase PF01637.13 234 4.4e-06 18.4 0.0 1 1 1.6e-07 8.1e-06 17.6 0.0 15 68 155 205 149 226 0.87 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 PhoH PF02562.11 205 1.6e-09 29.2 4.8 1 2 9.6e-07 2.4e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 1077 PhoH PF02562.11 205 1.6e-09 29.2 4.8 2 2 3e-06 7.6e-05 13.9 0.1 120 162 562 605 553 635 0.82 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 PhoH PF02562.11 205 0.00015 12.9 0.0 1 1 1.1e-05 0.00028 12.1 0.0 14 45 153 184 143 210 0.79 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_4 - 264 SprT-like PF10263.4 157 1.9e-37 120.2 0.0 1 1 5.3e-39 2.7e-37 119.8 0.0 1 150 12 236 12 262 0.92 # 2996 # 3787 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 2_3 - 332 ResIII PF04851.10 184 3.1e-06 19.0 0.0 1 1 9.8e-08 4.9e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 TrwB_AAD_bind PF10412.4 386 5.3e-119 389.1 0.0 1 1 3.7e-120 6.2e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_10 - 867 TrwB_AAD_bind PF10412.4 386 4.6e-07 20.6 1.6 1 2 1.5e-06 2.5e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_10 - 867 TrwB_AAD_bind PF10412.4 386 4.6e-07 20.6 1.6 2 2 0.0042 0.07 3.5 0.0 102 168 741 806 720 812 0.79 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_3 - 332 TrwB_AAD_bind PF10412.4 386 6.8e-06 16.8 0.1 1 1 6.4e-07 1.1e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_18 PF13238.1 129 2.4e-06 19.9 0.0 1 1 2e-07 4.9e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 AAA_18 PF13238.1 129 6.4e-05 15.2 0.0 1 1 5.2e-06 0.00013 14.2 0.0 3 21 131 149 130 238 0.78 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_5 - 422 IMS_HHH PF11798.3 32 2.3e-07 22.6 0.0 1 1 1.4e-08 6.8e-07 21.2 0.0 4 32 171 199 168 199 0.85 # 3938 # 5203 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_3 - 332 GvpD PF07088.6 484 1.3e-06 18.9 0.0 1 1 3.9e-08 1.9e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 DUF258 PF03193.11 161 5.6e-05 14.3 0.0 1 1 2e-06 0.0001 13.5 0.0 29 61 151 184 129 224 0.81 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 DUF87 PF01935.12 229 5.5e-08 24.8 0.0 1 1 3.4e-09 8.5e-08 24.2 0.0 10 68 116 170 109 262 0.85 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_3 - 332 DUF87 PF01935.12 229 1.3e-06 20.3 0.0 1 1 9.7e-08 2.4e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 4_1 - 235 HTH_28 PF13518.1 52 2.9e-05 16.0 1.2 1 1 5.1e-06 0.00013 14.0 1.2 22 36 40 54 13 55 0.76 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_23 - 199 HTH_28 PF13518.1 52 3.6e-05 15.7 0.0 1 1 8.4e-06 0.00021 13.3 0.0 14 32 167 185 159 191 0.87 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 HTH_24 PF13412.1 48 2.3e-05 15.7 0.0 1 2 0.032 1.6 0.2 0.0 30 46 74 90 69 104 0.81 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 HTH_24 PF13412.1 48 2.3e-05 15.7 0.0 2 2 4.6e-06 0.00023 12.5 0.0 10 38 158 186 157 188 0.92 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_3 - 332 Sigma54_activ_2 PF14532.1 138 1.2e-06 20.6 0.0 1 1 5e-08 2.5e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 MMR_HSR1 PF01926.18 116 0.00022 13.2 0.0 1 1 7.1e-06 0.00035 12.5 0.0 2 41 161 205 160 310 0.84 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 DEAD PF00270.24 169 1.5e-06 19.7 0.0 1 1 5.7e-08 2.8e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 DUF2075 PF09848.4 352 4.5e-05 14.4 0.0 1 1 1.3e-06 6.5e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 UvrD_C_2 PF13538.1 104 1.3e-16 52.6 0.1 1 1 1e-17 5.2e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 T2SE PF00437.15 272 1.6e-52 170.0 0.1 1 1 7.4e-54 1.8e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 T2SE PF00437.15 272 0.00044 11.1 0.1 1 1 3.1e-05 0.00077 10.3 0.1 130 149 128 147 103 160 0.84 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_3 - 332 NACHT PF05729.7 166 4.4e-05 15.1 0.0 1 1 1.9e-06 9.6e-05 14.0 0.0 1 27 159 185 159 188 0.90 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 UPF0079 PF02367.12 123 3e-06 18.8 0.0 1 1 1.2e-07 6.1e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_17 PF13207.1 121 0.0002 14.1 0.1 1 1 2.8e-05 0.00047 12.9 0.1 2 40 161 195 160 229 0.75 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 AAA_17 PF13207.1 121 0.00028 13.7 0.1 1 1 6.7e-05 0.0011 11.7 0.0 4 42 131 191 129 260 0.58 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_10 - 867 AAA_17 PF13207.1 121 0.00047 12.9 4.9 1 1 0.00023 0.0038 10.0 0.0 3 21 495 513 494 565 0.80 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_3 - 332 AAA_7 PF12775.2 272 5e-05 14.4 0.0 1 1 2.3e-06 0.00012 13.2 0.0 25 64 150 189 139 209 0.86 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 TIGR03346 TIGR03346 853 7.4e-05 12.8 0.0 1 1 2e-06 0.0001 12.3 0.0 598 641 161 204 149 238 0.89 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_22 - 1077 Viral_helicase1 PF01443.13 234 3.4e-15 48.1 5.4 1 2 2.3e-08 1.1e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 1077 Viral_helicase1 PF01443.13 234 3.4e-15 48.1 5.4 2 2 3e-11 1.5e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 332 Pox_A32 PF04665.7 241 5e-05 14.6 0.0 1 1 1.7e-06 8.5e-05 13.8 0.0 12 46 157 191 150 210 0.85 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 AAA_14 PF13173.1 128 6.2e-06 18.1 0.0 1 2 4.3e-06 0.00011 14.1 0.0 6 89 130 213 125 234 0.76 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 510 AAA_14 PF13173.1 128 6.2e-06 18.1 0.0 2 2 0.043 1.1 1.1 0.0 53 81 340 372 300 391 0.57 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_3 - 332 AAA_14 PF13173.1 128 0.00014 13.7 0.1 1 2 0.0044 0.11 4.3 0.0 64 96 135 165 98 166 0.69 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_14 PF13173.1 128 0.00014 13.7 0.1 2 2 6.3e-05 0.0016 10.3 0.0 2 35 158 191 157 213 0.80 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_33 PF13671.1 143 0.00018 13.3 0.0 1 1 5.9e-06 0.0003 12.6 0.0 2 26 161 188 160 256 0.81 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_21 - 510 T4SS-DNA_transf PF02534.9 469 2.7e-12 37.8 0.0 1 1 7.9e-14 4e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_3 - 332 RNA_helicase PF00910.17 107 9.9e-06 17.7 0.1 1 2 3.5e-06 0.00017 13.7 0.0 1 25 161 185 161 242 0.75 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 RNA_helicase PF00910.17 107 9.9e-06 17.7 0.1 2 2 0.027 1.4 1.2 0.1 69 100 290 322 281 328 0.78 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_3 - 332 AAA_2 PF07724.9 171 2.9e-06 19.2 0.0 1 1 1e-07 5.1e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 2_21 - 478 DNA_methylase PF00145.12 335 1.1e-79 259.8 0.0 1 1 4.4e-81 2.2e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 15386 # 16819 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 4_1 - 235 DDE_Tnp_IS240 PF13610.1 140 3.8e-53 171.2 0.0 1 1 1.1e-54 5.3e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 54 # 758 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_23 - 199 HTH_17 PF12728.2 51 9.3e-06 17.8 0.0 1 1 4.1e-07 2e-05 16.8 0.0 2 27 166 191 165 196 0.90 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_19 - 140 RuvA_C PF07499.8 47 0.00082 11.5 0.8 1 2 0.01 0.52 2.6 0.3 39 46 6 13 5 14 0.92 # 12902 # 13321 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_19 - 140 RuvA_C PF07499.8 47 0.00082 11.5 0.8 2 2 0.00038 0.019 7.2 0.0 11 25 21 35 21 36 0.92 # 12902 # 13321 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_23 - 199 HTH_11 PF08279.7 55 3e-07 22.0 0.1 1 1 2.8e-08 1.4e-06 19.9 0.0 7 35 158 185 152 187 0.85 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_22 - 1077 PIF1 PF05970.9 364 1e-06 19.8 0.1 1 2 1.3e-07 6.7e-06 17.1 0.0 2 65 478 537 477 588 0.85 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 1077 PIF1 PF05970.9 364 1e-06 19.8 0.1 2 2 0.089 4.5 -2.1 0.0 334 363 795 823 783 824 0.84 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 199 TrmB PF01978.14 68 9.4e-06 17.3 0.0 1 1 4.3e-07 2.2e-05 16.1 0.0 6 42 149 185 146 188 0.94 # 18306 # 18902 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_22 - 1077 Helicase_RecD PF05127.9 177 1e-05 17.2 4.9 1 2 0.00059 0.029 5.9 0.1 122 146 498 522 481 539 0.76 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 1077 Helicase_RecD PF05127.9 177 1e-05 17.2 4.9 2 2 7.1e-06 0.00035 12.1 0.1 73 114 546 585 521 653 0.70 # 15781 # 19011 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_24 - 292 Seryl_tRNA_N PF02403.17 108 0.0046 9.0 13.5 1 4 0.02 1 1.4 0.1 57 104 11 59 2 63 0.69 # 19870 # 20745 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_24 - 292 Seryl_tRNA_N PF02403.17 108 0.0046 9.0 13.5 2 4 0.0053 0.26 3.3 0.8 39 96 39 107 17 111 0.52 # 19870 # 20745 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_24 - 292 Seryl_tRNA_N PF02403.17 108 0.0046 9.0 13.5 3 4 0.00048 0.024 6.6 0.1 27 59 90 122 75 144 0.84 # 19870 # 20745 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_24 - 292 Seryl_tRNA_N PF02403.17 108 0.0046 9.0 13.5 4 4 0.00026 0.013 7.5 1.6 17 107 162 251 155 252 0.76 # 19870 # 20745 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 2_10 - 867 AAA_10 PF12846.2 304 1.2e-35 115.3 0.1 1 1 2.4e-36 4e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 8377 # 10977 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_21 - 510 AAA_10 PF12846.2 304 2.7e-07 22.2 0.1 1 2 2.1e-05 0.00034 12.0 0.1 3 41 128 166 126 177 0.92 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 510 AAA_10 PF12846.2 304 2.7e-07 22.2 0.1 2 2 0.00034 0.0056 8.0 0.0 214 286 339 414 307 431 0.75 # 14252 # 15781 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_3 - 332 AAA_10 PF12846.2 304 0.00013 13.3 0.0 1 1 1.2e-05 0.00021 12.7 0.0 3 29 160 185 158 233 0.81 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 292 AAA_13 PF13166.1 712 0.00043 10.7 18.3 1 2 2.1e-05 0.0011 9.4 3.4 365 471 17 125 5 133 0.60 # 19870 # 20745 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_24 - 292 AAA_13 PF13166.1 712 0.00043 10.7 18.3 2 2 0.0001 0.0052 7.1 7.2 322 439 158 285 138 291 0.75 # 19870 # 20745 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 2_3 - 332 IstB_IS21 PF01695.12 178 1.4e-05 16.5 0.0 1 1 4.5e-07 2.2e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 1_5 - 422 DNA_pol_lambd_f PF10391.4 52 1.1e-06 20.1 0.1 1 2 3e-07 1.5e-05 16.5 0.0 6 35 182 211 180 216 0.84 # 3938 # 5203 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 422 DNA_pol_lambd_f PF10391.4 52 1.1e-06 20.1 0.1 2 2 0.048 2.4 -0.2 0.0 6 20 265 279 256 283 0.80 # 3938 # 5203 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_3 - 332 GTP_EFTU PF00009.22 188 0.00011 13.6 0.2 1 1 3.5e-06 0.00017 12.9 0.2 2 32 157 187 156 205 0.83 # 2346 # 3341 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.498 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/441d018c-0986-4ff7-831b-dd128245ada3 # Target file: checkm_output/bins/pm1871/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1871/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/441d018c-0986-4ff7-831b-dd128245ada3 checkm_output/bins/pm1871/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:15 2017 # [ok]