# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 344 KaiC PF06745.8 227 0.00029 11.7 0.1 1 1 1.2e-05 0.00052 10.9 0.1 8 37 152 181 147 187 0.88 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 344 ABC_tran PF00005.22 137 3.4e-05 15.9 0.0 1 1 2.2e-06 9.7e-05 14.4 0.0 7 32 159 184 156 226 0.85 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_33 - 215 HTH_38 PF13936.1 44 0.00043 11.6 0.3 1 2 0.062 2.7 -0.5 0.0 3 20 81 98 79 99 0.86 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_33 - 215 HTH_38 PF13936.1 44 0.00043 11.6 0.3 2 2 1e-05 0.00043 11.6 0.3 16 43 179 206 170 207 0.79 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_34 - 207 MobB PF03205.9 140 1.1e-06 20.1 0.4 1 1 2.7e-07 5.8e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 MobB PF03205.9 140 4.9e-05 14.8 0.0 1 1 4.3e-06 9.2e-05 13.9 0.0 2 42 165 204 164 227 0.86 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_16 - 253 Adenylsucc_synt PF00709.16 421 0.0008 9.8 4.2 1 2 2.1e-05 0.00089 9.6 0.0 156 229 48 122 22 126 0.76 # 10652 # 11410 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_16 - 253 Adenylsucc_synt PF00709.16 421 0.0008 9.8 4.2 2 2 0.011 0.46 0.7 1.6 136 199 158 216 147 246 0.52 # 10652 # 11410 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_34 - 207 CbiA PF01656.18 195 4.5e-29 92.9 1.6 1 1 2.7e-30 1.1e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_43 - 269 Rep_3 PF01051.16 222 2.4e-29 94.2 5.7 1 1 6.4e-31 2.8e-29 94.0 5.7 5 222 2 249 1 249 0.87 # 30840 # 31646 # -1 # ID=1_43;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.358 1_22 - 344 AAA_23 PF13476.1 202 0.00018 13.6 0.1 1 1 7.9e-06 0.00034 12.7 0.1 21 38 165 182 157 185 0.89 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 207 AAA_24 PF13479.1 213 0.00027 12.3 0.6 1 2 1.7e-05 0.00072 10.9 0.1 12 88 11 95 3 99 0.81 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 AAA_24 PF13479.1 213 0.00027 12.3 0.6 2 2 0.078 3.3 -1.1 0.0 168 206 118 156 115 164 0.79 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 Zeta_toxin PF06414.7 201 9.9e-06 16.4 0.0 1 1 3.7e-07 1.6e-05 15.8 0.0 10 59 156 208 148 232 0.81 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 207 AAA_30 PF13604.1 196 0.00015 13.1 0.4 1 1 7.4e-06 0.00032 12.0 0.1 26 106 10 88 2 97 0.75 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_23 - 612 TraG-D_C PF12696.2 128 1.1e-27 88.1 0.0 1 1 4.3e-29 1.9e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 16968 # 18803 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_34 - 207 MipZ PF09140.6 261 7.7e-15 46.3 0.9 1 2 1.3e-11 5.7e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 MipZ PF09140.6 261 7.7e-15 46.3 0.9 2 2 8.2e-07 3.5e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_27 - 718 zf-C4_Topoisom PF01396.14 39 0.00056 11.2 1.3 1 1 2.7e-05 0.0012 10.2 1.3 4 21 635 650 632 661 0.78 # 20400 # 22553 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_34 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 1 2 1.8e-05 0.00079 10.6 0.0 10 38 12 41 3 47 0.86 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 2 2 0.019 0.84 0.7 0.1 114 146 115 147 71 170 0.78 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 AAA_22 PF13401.1 131 0.00022 13.1 0.0 1 1 8.7e-06 0.00037 12.4 0.0 4 30 163 189 160 240 0.68 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 344 AAA_29 PF13555.1 62 3.2e-05 15.2 0.0 1 1 1.6e-06 6.9e-05 14.1 0.0 12 43 152 183 139 186 0.81 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 207 SRP54 PF00448.17 196 4.5e-05 14.6 0.4 1 1 3.6e-06 0.00015 12.9 0.3 11 54 12 50 2 142 0.73 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_33 - 215 HTH_32 PF13565.1 77 0.00046 12.7 3.4 1 1 1.1e-05 0.00045 12.8 1.7 8 55 149 190 139 213 0.67 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_33 - 215 HTH_23 PF13384.1 50 1e-08 26.4 0.1 1 1 5.4e-10 2.3e-08 25.3 0.1 5 46 171 210 167 214 0.88 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_34 - 207 Fer4_NifH PF00142.13 273 6.8e-07 20.4 0.0 1 1 2.8e-08 1.2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_33 - 215 HTH_7 PF02796.10 45 1e-09 29.9 0.3 1 2 0.00041 0.017 6.8 0.0 2 26 79 104 79 105 0.86 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_33 - 215 HTH_7 PF02796.10 45 1e-09 29.9 0.3 2 2 1.9e-08 8.3e-07 20.6 0.0 1 38 165 200 165 200 0.96 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_34 - 207 DUF1611 PF07755.6 301 1.6e-06 18.6 0.3 1 1 5.8e-08 2.5e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_23 - 612 TrwB_AAD_bind PF10412.4 386 2.1e-21 67.6 0.0 1 1 7.6e-23 3.3e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 16968 # 18803 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_34 - 207 TIGR01968 TIGR01968 261 1.7e-12 38.6 1.6 1 2 1e-09 4.4e-08 24.1 0.0 2 39 2 39 1 47 0.90 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 TIGR01968 TIGR01968 261 1.7e-12 38.6 1.6 2 2 1.2e-06 5.3e-05 14.0 0.3 109 179 73 145 56 196 0.76 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 DUF258 PF03193.11 161 8.5e-05 13.5 0.0 1 1 3.1e-06 0.00014 12.8 0.0 31 59 158 187 143 220 0.82 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_33 - 215 HTH_28 PF13518.1 52 6.7e-06 17.8 0.1 1 1 4.8e-07 2.1e-05 16.3 0.1 4 35 175 206 172 209 0.92 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_34 - 207 LpxK PF02606.9 326 2.3e-05 15.1 0.1 1 1 8.4e-07 3.6e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 DEAD PF00270.24 169 9.8e-05 13.6 0.0 1 1 3.8e-06 0.00017 12.9 0.0 6 33 154 182 151 246 0.77 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 344 T2SE PF00437.15 272 7.2e-53 170.9 0.0 1 1 2.1e-54 9.2e-53 170.5 0.0 12 242 25 281 16 315 0.89 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 344 UPF0079 PF02367.12 123 0.00014 13.2 0.0 1 1 6.1e-06 0.00026 12.3 0.0 8 39 156 187 151 196 0.83 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 344 AAA_17 PF13207.1 121 1.9e-05 17.2 0.0 1 1 2e-06 4.4e-05 16.1 0.0 2 43 166 207 165 242 0.80 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 207 AAA_17 PF13207.1 121 3.7e-05 16.3 0.0 1 1 2.3e-06 4.9e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 AAA_25 PF13481.1 194 0.00011 13.3 0.0 1 1 3.6e-06 0.00016 12.8 0.0 22 51 152 181 137 247 0.87 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 207 VirC1 PF07015.6 231 3.2e-15 47.5 0.2 1 1 1.5e-16 6.4e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 AAA_33 PF13671.1 143 6.7e-06 17.8 0.0 1 2 0.063 2.7 -0.4 0.0 7 39 96 127 93 163 0.79 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 344 AAA_33 PF13671.1 143 6.7e-06 17.8 0.0 2 2 7.6e-07 3.3e-05 15.5 0.0 2 25 166 191 165 257 0.69 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 207 ArgK PF03308.11 267 4.7e-05 13.9 0.0 1 1 2.5e-06 0.00011 12.7 0.0 39 72 12 45 5 53 0.90 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_23 - 612 T4SS-DNA_transf PF02534.9 469 8.3e-146 477.8 0.0 1 1 2.4e-147 1e-145 477.5 0.0 2 461 102 571 101 578 0.98 # 16968 # 18803 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_34 - 207 NTPase_1 PF03266.10 168 0.00016 13.1 0.1 1 1 1.1e-05 0.00049 11.5 0.0 7 58 10 66 5 94 0.80 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 ATP_bind_1 PF03029.12 238 2e-05 15.9 0.0 1 1 1.7e-06 3.6e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 ATP_bind_1 PF03029.12 238 0.0002 12.7 0.0 1 1 1.4e-05 0.00029 12.1 0.0 2 23 169 190 168 206 0.87 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_27 - 718 Toprim_Crpt PF13342.1 62 6.8e-20 62.3 2.4 1 1 1.6e-21 6.8e-20 62.3 2.4 1 58 652 711 652 713 0.92 # 20400 # 22553 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_33 - 215 HTH_17 PF12728.2 51 6.1e-05 15.0 0.1 1 2 0.0096 0.41 2.7 0.0 16 29 89 102 88 112 0.85 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_33 - 215 HTH_17 PF12728.2 51 6.1e-05 15.0 0.1 2 2 8.9e-05 0.0038 9.3 0.0 5 25 187 207 185 211 0.88 # 26358 # 27002 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_15 - 918 AAA_10 PF12846.2 304 8.5e-36 115.5 0.0 1 1 6.9e-37 1.5e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 7888 # 10641 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_34 - 207 AAA_10 PF12846.2 304 5.6e-06 17.6 0.0 1 1 4.7e-07 1e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 ArsA_ATPase PF02374.10 305 1.2e-08 26.0 0.2 1 1 4.8e-10 2.1e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 AAA_31 PF13614.1 157 7.5e-09 27.4 0.3 1 2 9.4e-09 4e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 207 AAA_31 PF13614.1 157 7.5e-09 27.4 0.3 2 2 0.0047 0.2 3.3 0.0 115 152 74 109 58 114 0.83 # 27288 # 27908 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_22 - 344 IstB_IS21 PF01695.12 178 0.00018 12.7 0.0 1 1 8.1e-06 0.00035 11.7 0.0 44 66 160 182 140 186 0.93 # 15934 # 16965 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.405 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b8c32b8a-d477-4427-b4e7-5546bae743a5 # Target file: checkm_output/bins/pm1868/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1868/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b8c32b8a-d477-4427-b4e7-5546bae743a5 checkm_output/bins/pm1868/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:04 2017 # [ok]