# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 228 Cons_hypoth95 PF03602.10 183 9.8e-06 17.9 0.0 1 2 0.00032 0.03 6.5 0.0 113 146 19 54 5 81 0.66 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Cons_hypoth95 PF03602.10 183 9.8e-06 17.9 0.0 2 2 4e-05 0.0038 9.4 0.0 41 62 162 183 145 218 0.78 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_6 - 92 Zn_Tnp_IS1 PF03811.8 36 7.6e-24 75.8 4.5 1 1 1.6e-25 1.5e-23 74.9 4.5 1 36 1 36 1 36 0.99 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 5_4 - 172 HTH_IclR PF09339.5 52 9.9e-06 18.0 0.2 1 1 4.1e-07 3.8e-05 16.1 0.0 15 40 141 166 137 167 0.85 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_29 - 876 ABC_tran PF00005.22 137 0.00096 12.3 0.0 1 1 2.9e-05 0.0027 10.8 0.0 13 102 481 610 476 619 0.60 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 5_4 - 172 HTH_22 PF13309.1 64 0.00013 14.5 0.7 1 2 0.079 7.4 -0.7 0.0 24 37 60 73 34 74 0.76 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 5_4 - 172 HTH_22 PF13309.1 64 0.00013 14.5 0.7 2 2 1.1e-05 0.00099 11.7 0.1 35 63 142 165 129 166 0.76 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 2_6 - 228 TIGR00095 TIGR00095 194 0.00015 13.9 0.0 1 2 0.00077 0.073 5.2 0.0 124 138 20 34 3 79 0.72 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 TIGR00095 TIGR00095 194 0.00015 13.9 0.0 2 2 0.00024 0.023 6.8 0.0 53 86 164 199 155 218 0.77 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.2 0.2 1 2 2e-06 0.00019 13.7 0.0 39 63 476 504 463 507 0.84 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.2 0.2 2 2 0.018 1.7 0.9 0.0 75 166 530 625 529 634 0.75 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 5_4 - 172 HTH_40 PF14493.1 91 0.00051 13.1 0.5 1 1 1.9e-05 0.0018 11.4 0.1 7 32 138 163 133 169 0.89 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 5_4 - 172 HTH_38 PF13936.1 44 2.5e-06 19.8 1.4 1 1 5.2e-08 4.9e-06 18.9 0.0 9 41 133 165 131 168 0.93 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_29 - 876 MobB PF03205.9 140 0.00064 12.3 0.1 1 1 2.7e-05 0.0025 10.3 0.0 4 37 483 515 481 523 0.79 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 5_6 - 252 FmrO PF07091.6 251 2e-82 268.7 0.0 1 1 2.4e-84 2.3e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 3758 # 4513 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_7 - 1757 AAA_19 PF13245.1 76 4.6e-08 25.6 1.3 1 1 2.8e-09 2.6e-07 23.2 0.3 5 76 979 1047 974 1047 0.74 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_6 - 228 MethyltransfD12 PF02086.10 260 0.00053 12.3 0.0 1 2 0.022 2.1 0.5 0.0 178 188 21 31 14 91 0.83 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 MethyltransfD12 PF02086.10 260 0.00053 12.3 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_40 - 229 Sigma70_r4_2 PF08281.7 54 0.00078 11.8 0.0 1 1 1.3e-05 0.0012 11.1 0.0 19 48 160 188 150 194 0.79 # 34978 # 35664 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.357 8_1 - 235 rve PF00665.21 120 3.1e-13 42.7 0.1 1 2 0.015 1.4 1.9 0.0 78 102 27 49 6 54 0.84 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 235 rve PF00665.21 120 3.1e-13 42.7 0.1 2 2 6.1e-14 5.7e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_16 - 188 Methyltransf_26 PF13659.1 117 2.5e-14 46.2 0.0 1 1 9e-16 4.2e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_6 - 228 Methyltransf_26 PF13659.1 117 1.4e-12 40.6 0.1 1 2 7e-08 3.3e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Methyltransf_26 PF13659.1 117 1.4e-12 40.6 0.1 2 2 1.9e-07 9.1e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 742 Zeta_toxin PF06414.7 201 0.00074 11.4 0.0 1 1 3.5e-05 0.0033 9.3 0.0 21 49 190 219 182 236 0.85 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_7 - 1757 AAA_30 PF13604.1 196 6.6e-45 145.9 12.8 1 3 0.083 3.9 -0.2 0.0 41 86 223 269 219 281 0.81 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 6.6e-45 145.9 12.8 2 3 1.1e-05 0.00052 12.4 2.6 7 142 420 547 416 571 0.81 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 6.6e-45 145.9 12.8 3 3 6.4e-44 3e-42 137.2 1.2 1 186 968 1156 968 1162 0.93 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 742 AAA_30 PF13604.1 196 0.00056 12.3 0.0 1 1 2.6e-05 0.0012 11.2 0.0 21 57 188 224 180 230 0.85 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 8_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00023 13.9 0.3 1 1 5.4e-06 0.00051 12.9 0.3 4 51 6 58 4 63 0.79 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_8 - 742 TraG-D_C PF12696.2 128 7.4e-21 67.2 0.0 1 1 1.4e-22 1.3e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 8_1 - 235 DDE_3 PF13358.1 146 0.00064 12.3 0.0 1 1 2.1e-05 0.002 10.7 0.0 32 90 82 141 59 146 0.87 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 228 UPF0020 PF01170.13 180 6.6e-06 18.6 0.0 1 2 0.00033 0.015 7.6 0.0 104 119 18 33 7 88 0.73 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 UPF0020 PF01170.13 180 6.6e-06 18.6 0.0 2 2 0.00012 0.0058 9.0 0.0 28 54 163 189 158 221 0.67 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_16 - 188 UPF0020 PF01170.13 180 0.00099 11.5 0.0 1 1 7.6e-05 0.0036 9.7 0.0 19 43 41 65 35 130 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.4 0.0 1 1 1.7e-06 0.00016 14.9 0.0 1 101 54 142 54 142 0.81 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 6_4 - 308 DDE_Tnp_1 PF01609.16 213 2.2e-24 79.0 0.8 1 1 3e-26 2.9e-24 78.6 0.8 4 205 115 286 112 293 0.88 # 1530 # 2453 # 1 # ID=6_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_34 - 476 DivIC PF04977.10 80 0.00083 11.7 4.6 1 1 1.8e-05 0.0017 10.7 4.6 17 66 76 124 72 125 0.92 # 31202 # 32629 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.575 4_6 - 474 KorB PF08535.5 93 3e-05 17.0 0.0 1 1 9.1e-07 8.5e-05 15.5 0.0 2 42 152 192 151 206 0.91 # 2700 # 4121 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_38 - 122 CTP_transf_2 PF01467.21 157 0.00018 14.4 0.0 1 1 2.1e-06 0.00019 14.3 0.0 31 112 6 87 1 100 0.76 # 34258 # 34623 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 5_2 - 400 zf-C4_Topoisom PF01396.14 39 0.011 8.1 9.2 1 3 0.0002 0.019 7.4 0.3 22 36 53 66 43 69 0.86 # 520 # 1719 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 5_2 - 400 zf-C4_Topoisom PF01396.14 39 0.011 8.1 9.2 2 3 0.0041 0.39 3.2 0.5 2 10 73 81 72 82 0.83 # 520 # 1719 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 5_2 - 400 zf-C4_Topoisom PF01396.14 39 0.011 8.1 9.2 3 3 0.022 2 0.9 0.2 3 15 362 374 361 379 0.86 # 520 # 1719 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 2_6 - 228 N6_N4_Mtase PF01555.13 231 6.2e-37 120.1 0.0 1 2 1.3e-15 1.2e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 N6_N4_Mtase PF01555.13 231 6.2e-37 120.1 0.0 2 2 5.4e-25 5.1e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_5 - 321 Hydantoinase_A PF01968.13 290 1.4e-08 26.9 0.2 1 3 0.062 5.8 -1.3 0.0 154 175 130 151 109 155 0.77 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 Hydantoinase_A PF01968.13 290 1.4e-08 26.9 0.2 2 3 3.2e-06 0.0003 12.7 0.0 68 97 156 183 149 192 0.81 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 Hydantoinase_A PF01968.13 290 1.4e-08 26.9 0.2 3 3 8.3e-06 0.00078 11.4 0.0 214 265 242 297 198 307 0.78 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_8 - 742 AAA_16 PF13191.1 185 4.1e-06 19.7 0.0 1 1 2e-07 1.9e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 5_4 - 172 HTH_Tnp_IS630 PF01710.11 120 8.2e-05 15.1 0.0 1 1 1.7e-06 0.00016 14.2 0.0 8 44 134 170 131 171 0.90 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 8_1 - 235 HTH_32 PF13565.1 77 1.2e-06 22.1 0.2 1 1 5.6e-08 5.3e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_6 - 474 HTH_23 PF13384.1 50 5.3e-07 22.1 0.0 1 1 1.5e-07 3.6e-06 19.4 0.0 12 40 148 176 141 180 0.92 # 2700 # 4121 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 8_1 - 235 HTH_23 PF13384.1 50 5.7e-06 18.8 0.7 1 2 0.063 1.5 1.6 0.0 7 27 11 35 7 36 0.69 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 235 HTH_23 PF13384.1 50 5.7e-06 18.8 0.7 2 2 7.4e-06 0.00017 14.0 0.1 28 42 41 55 40 62 0.87 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_6 - 92 HTH_23 PF13384.1 50 2.1e-05 17.0 0.0 1 1 1.4e-06 3.4e-05 16.3 0.0 7 40 53 86 51 90 0.93 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 5_4 - 172 HTH_23 PF13384.1 50 3.6e-05 16.2 0.3 1 1 1.5e-06 3.6e-05 16.2 0.3 5 39 132 166 128 170 0.87 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 5_4 - 172 HTH_7 PF02796.10 45 1.9e-13 43.0 1.1 1 1 4.5e-15 4.2e-13 41.8 0.1 1 44 127 167 127 168 0.97 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_6 - 92 zinc_ribbon_4 PF13717.1 36 5.3e-05 15.7 4.1 1 1 1.6e-06 0.00015 14.3 4.1 3 35 6 39 5 40 0.86 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 5_4 - 172 HTH_29 PF13551.1 112 8.6e-05 15.5 0.7 1 2 0.051 2.4 1.2 0.2 24 46 100 122 75 136 0.67 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 5_4 - 172 HTH_29 PF13551.1 112 8.6e-05 15.5 0.7 2 2 1.8e-05 0.00085 12.3 0.0 4 35 137 167 134 170 0.90 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 4_6 - 474 HTH_29 PF13551.1 112 0.00038 13.5 0.0 1 1 5e-05 0.0024 10.9 0.0 8 36 150 177 143 189 0.86 # 2700 # 4121 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 Met_10 PF02475.11 200 0.00042 12.7 0.0 1 1 5.7e-06 0.00054 12.4 0.0 98 189 47 132 29 145 0.79 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 8_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.2e-12 39.5 0.3 1 1 3e-14 2.8e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_16 - 188 Methyltransf_31 PF13847.1 152 5.8e-07 22.0 0.0 1 1 7.6e-09 7.2e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_8 - 742 TrwB_AAD_bind PF10412.4 386 2.5e-150 493.1 0.0 1 1 6.5e-152 3.1e-150 492.8 0.0 2 386 172 561 171 561 0.99 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 TrwB_AAD_bind PF10412.4 386 8e-07 20.7 0.3 1 1 4.8e-08 2.2e-06 19.3 0.0 15 53 479 517 470 547 0.80 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_6 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.3 0.0 1 2 0.012 1.2 1.5 0.0 53 79 4 29 2 33 0.91 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.3 0.0 2 2 4.2e-05 0.004 9.5 0.0 3 31 166 194 164 209 0.86 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_16 - 188 Methyltransf_12 PF08242.7 99 1.1e-05 18.8 0.0 1 1 2e-07 1.9e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 3_6 - 92 HTH_Tnp_IS1 PF12759.2 46 1.9e-31 100.1 0.2 1 1 3.2e-33 3e-31 99.5 0.2 1 46 43 88 43 88 0.99 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 2_16 - 188 Methyltrans_SAM PF10672.4 286 0.00087 11.0 0.0 1 1 1.3e-05 0.0012 10.5 0.0 196 261 113 173 100 180 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_29 - 876 DUF87 PF01935.12 229 2.2e-07 23.7 0.0 1 1 6.7e-09 6.3e-07 22.2 0.0 26 221 482 668 468 676 0.75 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 8_1 - 235 HTH_28 PF13518.1 52 5.5e-05 16.0 1.2 1 1 7.6e-06 0.00024 14.0 1.2 22 36 40 54 13 55 0.76 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_6 - 92 HTH_28 PF13518.1 52 8.3e-05 15.4 0.0 1 1 4e-06 0.00013 14.8 0.0 4 35 55 86 53 90 0.90 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 5_4 - 172 HTH_28 PF13518.1 52 0.00011 15.1 0.0 1 1 1.1e-05 0.00035 13.4 0.0 8 33 140 165 134 170 0.82 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 2_16 - 188 TIGR03533 TIGR03533 284 1.7e-05 16.7 0.0 1 1 2.9e-07 2.7e-05 16.1 0.0 114 210 43 133 36 141 0.87 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 TIGR03534 TIGR03534 253 3.3e-08 25.8 0.0 1 1 4.2e-10 3.9e-08 25.5 0.0 81 175 45 131 15 148 0.86 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_7 - 1757 UvrD_C_2 PF13538.1 104 1e-07 24.9 1.0 1 2 0.013 1.2 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 UvrD_C_2 PF13538.1 104 1e-07 24.9 1.0 2 2 3.6e-08 3.3e-06 20.0 0.2 3 102 1341 1444 1339 1446 0.76 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_16 - 188 TIGR00755 TIGR00755 256 6.7e-09 27.9 0.0 1 1 9.5e-11 8.9e-09 27.4 0.0 8 105 29 123 25 134 0.90 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_5 - 321 StbA PF06406.6 318 7.6e-157 513.9 1.5 1 1 9e-159 8.5e-157 513.8 1.5 1 317 1 317 1 318 0.99 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 YbaB_DNA_bd PF02575.11 93 0.00056 12.7 0.1 1 3 0.038 3.5 0.5 0.0 33 63 129 160 112 160 0.80 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 YbaB_DNA_bd PF02575.11 93 0.00056 12.7 0.1 2 3 0.028 2.6 0.9 0.0 63 78 201 216 195 223 0.84 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 YbaB_DNA_bd PF02575.11 93 0.00056 12.7 0.1 3 3 0.00045 0.042 6.6 0.0 63 87 247 271 235 276 0.84 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_8 - 742 AAA_17 PF13207.1 121 0.00031 14.4 0.0 1 1 1.2e-05 0.0011 12.6 0.0 3 27 189 217 187 262 0.68 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00021 13.6 0.1 1 2 0.00031 0.029 6.6 0.0 1 23 988 1011 988 1191 0.78 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00021 13.6 0.1 2 2 0.0021 0.2 3.9 0.1 159 234 1370 1447 1341 1447 0.63 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_29 - 876 Pox_A32 PF04665.7 241 0.00062 11.9 0.0 1 1 1.8e-05 0.0017 10.4 0.0 6 38 472 504 469 519 0.85 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 742 T4SS-DNA_transf PF02534.9 469 4.4e-10 31.4 0.0 1 1 2.1e-11 9.8e-10 30.3 0.0 250 361 362 476 198 500 0.76 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 T4SS-DNA_transf PF02534.9 469 3.5e-06 18.6 0.1 1 2 0.00023 0.011 7.1 0.0 105 186 533 608 475 623 0.88 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 T4SS-DNA_transf PF02534.9 469 3.5e-06 18.6 0.1 2 2 5.1e-05 0.0024 9.2 0.1 319 378 711 769 665 771 0.92 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 188 MTS PF05175.9 170 8.2e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltransf_23 PF13489.1 161 5.7e-05 15.7 0.0 1 1 1.6e-06 7.3e-05 15.3 0.0 9 120 38 153 27 174 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 5_6 - 252 Methyltransf_23 PF13489.1 161 0.00034 13.2 0.0 1 1 1.1e-05 0.0005 12.6 0.0 7 52 89 132 82 198 0.78 # 3758 # 4513 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_6 - 92 zinc_ribbon_5 PF13719.1 37 1.1e-05 17.9 2.9 1 1 3.2e-07 3e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 8_1 - 235 DDE_Tnp_IS240 PF13610.1 140 7.1e-53 171.2 0.0 1 1 1.1e-54 9.9e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 64 # 768 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_6 - 92 Zn_Tnp_IS1595 PF12760.2 46 0.00016 14.3 2.3 1 1 6.8e-06 0.00032 13.4 2.3 21 46 8 38 5 38 0.74 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 5_2 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0064 9.2 6.7 1 2 0.0051 0.24 4.1 1.2 19 32 73 85 57 97 0.74 # 520 # 1719 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 5_2 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0064 9.2 6.7 2 2 0.001 0.047 6.4 0.4 8 32 350 374 346 379 0.84 # 520 # 1719 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 6_4 - 308 DDE_Tnp_1_5 PF13737.1 112 1.3e-48 156.7 0.0 1 2 2.2e-49 2e-47 152.8 0.0 1 112 19 130 19 130 0.96 # 1530 # 2453 # 1 # ID=6_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 6_4 - 308 DDE_Tnp_1_5 PF13737.1 112 1.3e-48 156.7 0.0 2 2 0.031 3 0.9 0.0 42 68 263 291 234 297 0.82 # 1530 # 2453 # 1 # ID=6_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 5_4 - 172 TrmB PF01978.14 68 4.8e-05 15.9 0.0 1 1 1e-06 9.5e-05 14.9 0.0 19 44 141 166 136 167 0.89 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_29 - 876 AAA_10 PF12846.2 304 1.3e-49 162.0 0.0 1 1 4.7e-51 2.2e-49 161.3 0.0 1 294 479 768 479 774 0.89 # 26520 # 29147 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 742 AAA_10 PF12846.2 304 1.3e-10 33.9 0.0 1 1 5.1e-11 2.4e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 8974 # 11199 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 5_4 - 172 HTH_20 PF12840.2 61 6.3e-05 15.6 0.6 1 1 7.8e-06 0.00073 12.2 0.1 2 43 95 163 94 166 0.91 # 2030 # 2545 # 1 # ID=5_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 2_16 - 188 RrnaAD PF00398.15 262 2e-08 26.4 0.0 1 1 2.7e-10 2.5e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltransf_18 PF12847.2 112 2.8e-10 33.6 0.0 1 1 6.3e-12 5.9e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 3_6 - 92 DUF2387 PF09526.5 71 0.00017 14.4 0.2 1 1 2.3e-06 0.00021 14.0 0.2 10 47 7 47 5 72 0.76 # 4031 # 4306 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_7 - 1757 AAA_11 PF13086.1 236 8.4e-05 15.0 1.9 1 2 3.9e-06 0.00036 12.9 0.0 2 75 969 1039 968 1060 0.81 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_11 PF13086.1 236 8.4e-05 15.0 1.9 2 2 0.096 9 -1.5 1.5 62 123 1684 1744 1642 1753 0.46 # 3704 # 8974 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 4_8 - 176 SSB PF00436.20 104 2.2e-41 132.8 0.4 1 1 3.4e-43 3.2e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/be933967-68b3-4e12-9505-cf4f990bcbb5 # Target file: checkm_output/bins/pm1859/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1859/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/be933967-68b3-4e12-9505-cf4f990bcbb5 checkm_output/bins/pm1859/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:54:00 2017 # [ok]