# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 344 KaiC PF06745.8 227 0.00028 12.1 0.0 1 1 8.7e-06 0.0005 11.3 0.0 6 37 150 181 147 187 0.90 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_16 - 341 HHH_3 PF12836.2 65 0.00012 14.2 0.0 1 1 5.5e-06 0.00032 12.8 0.0 14 57 212 255 210 257 0.95 # 14128 # 15150 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_9 - 726 ABC_tran PF00005.22 137 6.9e-34 109.2 0.0 1 1 4.6e-35 1.3e-33 108.3 0.0 1 137 515 664 515 664 0.85 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 ABC_tran PF00005.22 137 3.2e-05 16.4 0.0 1 1 3e-06 8.7e-05 15.0 0.0 7 32 159 184 155 226 0.85 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_16 - 341 HHH_5 PF14520.1 60 8.2e-05 14.9 0.0 1 1 4.7e-06 0.00027 13.3 0.0 6 49 213 253 210 257 0.91 # 14128 # 15150 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_17 - 122 HTH_38 PF13936.1 44 0.00037 12.2 0.2 1 2 0.075 4.3 -0.8 0.2 8 21 51 69 49 70 0.75 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_17 - 122 HTH_38 PF13936.1 44 0.00037 12.2 0.2 2 2 6.4e-06 0.00037 12.2 0.2 25 43 95 113 77 114 0.78 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_8 - 207 MobB PF03205.9 140 1.5e-06 20.1 0.4 1 1 2.7e-07 7.9e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 344 MobB PF03205.9 140 7.2e-05 14.7 0.0 1 1 4.3e-06 0.00012 13.9 0.0 2 42 165 204 164 227 0.86 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 CbiA PF01656.18 195 6.1e-29 92.9 1.6 1 1 2.7e-30 1.5e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_1 - 281 Rep_3 PF01051.16 222 9.1e-24 76.4 7.1 1 1 2.1e-25 1.2e-23 75.9 7.1 5 222 10 256 8 256 0.85 # 699 # 1541 # 1 # ID=1_1;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_36 - 344 AAA_23 PF13476.1 202 0.0002 13.8 0.1 1 1 1.3e-05 0.00036 13.0 0.1 21 38 165 182 152 185 0.88 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 726 AAA_23 PF13476.1 202 0.00072 12.0 0.1 1 1 4.3e-05 0.0013 11.2 0.1 11 39 516 545 502 549 0.83 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 207 AAA_24 PF13479.1 213 0.00036 12.3 0.6 1 2 1.7e-05 0.00097 10.9 0.1 12 88 11 95 3 99 0.81 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 AAA_24 PF13479.1 213 0.00036 12.3 0.6 2 2 0.078 4.5 -1.1 0.0 168 206 118 156 115 164 0.79 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 344 Zeta_toxin PF06414.7 201 9.1e-06 17.0 0.0 1 1 2.5e-07 1.4e-05 16.3 0.0 6 59 153 208 148 232 0.81 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 AAA_30 PF13604.1 196 0.0002 13.1 0.4 1 1 7.4e-06 0.00043 12.0 0.1 26 106 10 88 2 97 0.75 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 SMC_N PF02463.14 220 5.5e-09 27.7 0.1 1 2 0.00059 0.034 5.4 0.0 25 44 526 545 514 557 0.84 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 726 SMC_N PF02463.14 220 5.5e-09 27.7 0.1 2 2 2.1e-08 1.2e-06 20.0 0.0 137 209 636 702 575 708 0.92 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_19 - 108 HTH_Tnp_1 PF01527.15 76 4.7e-06 18.7 0.1 1 1 1.2e-07 6.9e-06 18.2 0.1 2 72 6 89 5 93 0.78 # 16999 # 17322 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_17 - 122 GerE PF00196.14 58 0.00042 11.8 0.1 1 1 1.3e-05 0.00073 11.0 0.1 10 40 82 112 78 114 0.91 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_35 - 612 TraG-D_C PF12696.2 128 1.5e-27 88.2 0.0 1 1 4.3e-29 2.5e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 31644 # 33479 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_8 - 207 MipZ PF09140.6 261 1e-14 46.3 0.9 1 2 1.3e-11 7.6e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 MipZ PF09140.6 261 1e-14 46.3 0.9 2 2 8.2e-07 4.7e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 AAA_21 PF13304.1 303 1.2e-07 24.1 0.1 1 1 6.1e-07 3.5e-05 16.0 0.1 2 283 528 679 527 689 0.79 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_14 - 220 Sigma70_r4 PF04545.11 50 3.9e-07 21.5 0.3 1 1 6.8e-09 3.9e-07 21.5 0.3 7 48 170 211 169 212 0.96 # 10239 # 10898 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.489 1_31 - 718 zf-C4_Topoisom PF01396.14 39 0.00075 11.2 1.3 1 1 2.7e-05 0.0016 10.2 1.3 4 21 635 650 632 661 0.78 # 27608 # 29761 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 207 cobW PF02492.14 178 0.00014 13.4 0.2 1 2 1.8e-05 0.0011 10.6 0.0 10 38 12 41 3 47 0.86 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 cobW PF02492.14 178 0.00014 13.4 0.2 2 2 0.019 1.1 0.7 0.1 114 146 115 147 71 170 0.78 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 AAA_16 PF13191.1 185 6.1e-06 18.4 0.4 1 1 7.7e-07 2.2e-05 16.6 0.4 22 84 523 584 514 688 0.50 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 AAA_16 PF13191.1 185 0.00064 11.8 0.0 1 1 3.1e-05 0.00089 11.4 0.0 22 54 161 194 151 300 0.75 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 726 AAA_22 PF13401.1 131 1.6e-05 17.3 0.0 1 2 2.5e-05 0.00073 11.8 0.0 5 24 526 545 522 569 0.90 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 726 AAA_22 PF13401.1 131 1.6e-05 17.3 0.0 2 2 0.022 0.63 2.3 0.0 63 122 633 688 618 693 0.60 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 AAA_22 PF13401.1 131 0.00034 12.9 0.0 1 1 2.1e-05 0.0006 12.1 0.0 5 30 164 189 160 241 0.69 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_1 - 281 NUMOD1 PF07453.8 37 0.0054 8.8 5.8 1 2 0.06 3.5 -0.1 0.0 21 31 92 102 90 103 0.82 # 699 # 1541 # 1 # ID=1_1;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 281 NUMOD1 PF07453.8 37 0.0054 8.8 5.8 2 2 5e-05 0.0029 9.7 0.6 1 29 155 188 155 190 0.84 # 699 # 1541 # 1 # ID=1_1;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_9 - 726 AAA_29 PF13555.1 62 2.2e-06 19.3 0.1 1 1 2.3e-07 6.8e-06 17.8 0.1 16 40 519 542 514 558 0.79 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 AAA_29 PF13555.1 62 8.7e-05 14.2 0.0 1 1 6.6e-06 0.00019 13.1 0.0 21 43 161 183 149 186 0.83 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 SRP54 PF00448.17 196 6.1e-05 14.6 0.4 1 1 3.6e-06 0.00021 12.9 0.3 11 54 12 50 2 142 0.73 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_17 - 122 HTH_32 PF13565.1 77 0.00013 14.9 1.4 1 1 3.6e-06 0.00021 14.2 1.4 8 54 56 96 45 114 0.71 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_53 - 81 HTH_3 PF01381.17 55 1.4e-05 17.1 0.0 1 1 4.5e-07 2.6e-05 16.2 0.0 1 24 10 33 10 35 0.90 # 47678 # 47920 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 726 Rad17 PF03215.10 519 0.00026 11.8 0.1 1 1 8.9e-06 0.00052 10.8 0.1 38 69 518 549 512 562 0.83 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_17 - 122 HTH_23 PF13384.1 50 3.1e-08 25.3 0.1 1 1 2.4e-09 6.9e-08 24.2 0.1 5 40 78 113 74 119 0.91 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_14 - 220 HTH_23 PF13384.1 50 8.1e-07 20.8 1.0 1 1 6.3e-08 1.8e-06 19.7 0.4 4 38 168 204 165 211 0.82 # 10239 # 10898 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.489 1_8 - 207 Fer4_NifH PF00142.13 273 9.1e-07 20.4 0.0 1 1 2.8e-08 1.6e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_17 - 122 HTH_7 PF02796.10 45 1.9e-06 19.9 0.2 1 1 7.9e-08 4.6e-06 18.6 0.0 1 38 72 107 72 107 0.96 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_53 - 81 HTH_19 PF12844.2 64 0.00016 13.9 0.1 1 1 3.4e-06 0.0002 13.6 0.1 3 25 9 31 7 62 0.84 # 47678 # 47920 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_19 - 108 HTH_29 PF13551.1 112 0.00029 13.2 0.1 1 1 5.9e-06 0.00034 12.9 0.1 2 63 17 83 16 100 0.79 # 16999 # 17322 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_8 - 207 DUF1611 PF07755.6 301 2.2e-06 18.6 0.3 1 1 5.8e-08 3.4e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_35 - 612 TrwB_AAD_bind PF10412.4 386 2.8e-21 67.6 0.0 1 1 7.6e-23 4.4e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 31644 # 33479 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_8 - 207 TIGR01968 TIGR01968 261 2.3e-12 38.6 1.6 1 2 1e-09 6e-08 24.1 0.0 2 39 2 39 1 47 0.90 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 TIGR01968 TIGR01968 261 2.3e-12 38.6 1.6 2 2 1.2e-06 7.1e-05 14.0 0.3 109 179 73 145 56 196 0.76 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 AAA_18 PF13238.1 129 0.00045 12.7 0.0 1 1 2.1e-05 0.0012 11.3 0.0 2 30 529 554 529 609 0.67 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 726 DUF258 PF03193.11 161 1.5e-05 16.4 0.0 1 1 9.2e-07 2.7e-05 15.6 0.0 32 59 521 549 499 583 0.79 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 DUF258 PF03193.11 161 0.00012 13.5 0.0 1 1 6.4e-06 0.00019 12.8 0.0 31 59 158 187 141 220 0.80 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 726 DUF87 PF01935.12 229 0.00044 12.2 0.1 1 1 1.4e-05 0.00082 11.3 0.1 26 44 528 546 519 554 0.94 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_19 - 108 HTH_28 PF13518.1 52 5.1e-11 34.6 0.1 1 1 2.5e-12 7.1e-11 34.1 0.1 1 38 15 54 15 69 0.90 # 16999 # 17322 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_17 - 122 HTH_28 PF13518.1 52 6.3e-06 18.3 0.2 1 1 5.3e-07 1.5e-05 17.1 0.2 4 35 82 113 79 113 0.92 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_8 - 207 LpxK PF02606.9 326 3.1e-05 15.1 0.1 1 1 8.4e-07 4.9e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 344 DEAD PF00270.24 169 0.00012 13.7 0.0 1 1 3.6e-06 0.00021 13.0 0.0 6 33 154 182 150 246 0.77 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_53 - 81 HTH_31 PF13560.1 64 5e-07 22.0 0.1 1 1 2e-08 5.9e-07 21.8 0.1 5 36 9 40 6 61 0.85 # 47678 # 47920 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_14 - 220 HTH_31 PF13560.1 64 0.0001 14.7 1.0 1 1 1.1e-05 0.00032 13.1 0.5 9 34 178 203 144 209 0.87 # 10239 # 10898 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.489 1_36 - 344 T2SE PF00437.15 272 1.2e-53 173.8 0.0 1 1 2.7e-55 1.6e-53 173.4 0.0 12 267 25 312 16 316 0.89 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 726 NACHT PF05729.7 166 0.00049 11.9 0.4 1 1 1.7e-05 0.00099 10.9 0.4 2 20 527 545 526 548 0.89 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 UPF0079 PF02367.12 123 0.00025 12.8 0.0 1 1 7.5e-06 0.00044 12.1 0.0 7 39 155 187 149 196 0.83 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 726 AAA_17 PF13207.1 121 1.7e-05 17.8 0.0 1 1 2.6e-06 5.1e-05 16.3 0.0 2 32 528 555 527 618 0.70 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 AAA_17 PF13207.1 121 2.7e-05 17.2 0.0 1 1 3e-06 5.8e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 AAA_17 PF13207.1 121 4.9e-05 16.3 0.0 1 1 3.4e-06 6.6e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 TIGR02211 TIGR02211 221 5.5e-24 76.7 0.0 1 1 2.2e-25 1.3e-23 75.5 0.0 11 219 505 709 499 711 0.83 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 726 AAA_25 PF13481.1 194 6.4e-05 14.5 0.1 1 1 5.5e-06 0.00016 13.2 0.1 30 51 522 543 506 555 0.85 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_36 - 344 AAA_25 PF13481.1 194 0.00013 13.5 0.0 1 1 6.4e-06 0.00019 13.0 0.0 21 51 151 181 139 248 0.87 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 726 AAA_14 PF13173.1 128 0.00033 12.7 0.0 1 1 2.4e-05 0.0014 10.7 0.0 3 26 526 549 524 571 0.85 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 207 VirC1 PF07015.6 231 4.3e-15 47.5 0.2 1 1 1.5e-16 8.6e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_16 - 341 Transposase_20 PF02371.11 87 8.5e-31 98.2 0.2 1 1 3.1e-32 1.8e-30 97.1 0.2 2 76 212 286 211 297 0.94 # 14128 # 15150 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_19 - 108 DUF1153 PF06627.6 90 2.8e-05 16.1 0.1 1 1 8.2e-07 4.8e-05 15.4 0.1 33 62 11 40 5 57 0.79 # 16999 # 17322 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_36 - 344 AAA_33 PF13671.1 143 9.2e-06 17.7 0.0 1 2 0.07 4 -0.6 0.0 7 39 96 127 93 164 0.78 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_36 - 344 AAA_33 PF13671.1 143 9.2e-06 17.7 0.0 2 2 6.8e-07 4e-05 15.7 0.0 2 25 166 191 165 274 0.71 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 207 ArgK PF03308.11 267 6.3e-05 13.9 0.0 1 1 2.5e-06 0.00015 12.7 0.0 39 72 12 45 5 53 0.90 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 SbcCD_C PF13558.1 90 9.8e-05 14.4 0.7 1 1 1.3e-05 0.00078 11.5 0.2 23 88 626 678 615 680 0.71 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_35 - 612 T4SS-DNA_transf PF02534.9 469 4.7e-146 479.1 0.0 1 1 1e-147 5.8e-146 478.8 0.0 2 461 102 571 101 578 0.98 # 31644 # 33479 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 1_8 - 207 NTPase_1 PF03266.10 168 0.00022 13.1 0.1 1 1 1.1e-05 0.00066 11.5 0.0 7 58 10 66 5 94 0.80 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 ATP_bind_1 PF03029.12 238 2.7e-05 15.9 0.0 1 1 1.7e-06 4.9e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 344 ATP_bind_1 PF03029.12 238 0.00026 12.7 0.0 1 1 1.4e-05 0.00039 12.1 0.0 2 23 169 190 168 206 0.87 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_31 - 718 Toprim_Crpt PF13342.1 62 6.5e-19 59.6 2.3 1 1 1.1e-20 6.5e-19 59.6 2.3 1 60 652 711 652 713 0.92 # 27608 # 29761 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.457 1_17 - 122 HTH_17 PF12728.2 51 0.0002 13.8 0.0 1 1 1.5e-05 0.0009 11.7 0.0 5 27 94 116 92 120 0.89 # 15688 # 16053 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.495 1_43 - 918 AAA_10 PF12846.2 304 1.2e-35 115.5 0.0 1 1 1e-36 2e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 39749 # 42502 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 1_8 - 207 AAA_10 PF12846.2 304 7.6e-06 17.6 0.0 1 1 7e-07 1.4e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_9 - 726 AAA_10 PF12846.2 304 1.9e-05 16.3 0.1 1 1 6.7e-06 0.00013 13.6 0.0 4 23 528 547 525 568 0.86 # 5432 # 7609 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 207 ArsA_ATPase PF02374.10 305 1.7e-08 26.0 0.2 1 1 4.8e-10 2.8e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 AAA_31 PF13614.1 157 1e-08 27.4 0.3 1 2 9.4e-09 5.4e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_8 - 207 AAA_31 PF13614.1 157 1e-08 27.4 0.3 2 2 0.0047 0.27 3.3 0.0 115 152 74 109 58 114 0.83 # 4447 # 5067 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 344 IstB_IS21 PF01695.12 178 0.00033 12.2 0.0 1 1 1.1e-05 0.00065 11.3 0.0 44 66 160 182 136 186 0.87 # 33482 # 34513 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ca06fb28-51c3-4741-9f8c-1570c7a4c3cc # Target file: checkm_output/bins/pm1854/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1854/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ca06fb28-51c3-4741-9f8c-1570c7a4c3cc checkm_output/bins/pm1854/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:53:45 2017 # [ok]