# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 236 HTH_AsnC-type PF13404.1 42 8.7e-07 17.2 0.0 1 1 3.1e-07 1.6e-06 16.4 0.0 8 40 181 213 179 213 0.95 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_38 PF13936.1 44 9.4e-09 23.5 0.2 1 1 3.8e-09 1.9e-08 22.5 0.2 17 44 187 214 178 214 0.87 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 MarR PF01047.17 59 1.7e-05 13.2 0.0 1 1 7.1e-06 3.6e-05 12.2 0.0 1 40 174 213 174 213 0.94 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 Sigma70_r4_2 PF08281.7 54 6.6e-08 20.7 0.3 1 1 2.7e-08 1.4e-07 19.7 0.3 3 50 166 214 164 216 0.94 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 Sigma70_r4 PF04545.11 50 3e-06 15.3 0.1 1 1 1.1e-06 5.3e-06 14.5 0.1 2 42 171 213 170 219 0.78 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 KorB PF08535.5 93 1.3e-05 14.1 0.1 1 1 6.1e-06 3e-05 12.9 0.1 7 34 194 221 188 225 0.86 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_23 PF13384.1 50 4.1e-07 18.4 0.1 1 1 1.8e-07 8.8e-07 17.3 0.1 12 40 187 213 178 218 0.86 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_29 PF13551.1 112 3.8e-05 12.6 0.1 1 1 1.6e-05 8e-05 11.5 0.0 12 37 191 215 180 227 0.80 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 Sigma70_r3 PF04539.11 78 1.3e-06 17.0 0.0 1 2 0.041 0.2 0.4 0.0 29 46 108 125 107 146 0.84 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 Sigma70_r3 PF04539.11 78 1.3e-06 17.0 0.0 2 2 2.4e-06 1.2e-05 13.9 0.0 17 43 187 213 170 215 0.85 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_28 PF13518.1 52 1.2e-05 14.1 0.1 1 1 5.1e-06 2.6e-05 13.0 0.1 5 35 181 213 180 215 0.82 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_24 PF13412.1 48 1.4e-07 19.6 0.1 1 1 7.7e-08 3.8e-07 18.2 0.1 4 40 177 213 174 213 0.90 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_10 PF04967.7 53 1.2e-05 13.6 0.1 1 1 4.9e-06 2.5e-05 12.6 0.1 20 52 187 220 187 221 0.88 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_36 PF13730.1 55 9.7e-07 17.7 0.7 1 2 0.0051 0.025 3.5 0.2 7 45 85 119 80 122 0.62 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_36 PF13730.1 55 9.7e-07 17.7 0.7 2 2 1.9e-05 9.4e-05 11.3 0.0 26 47 191 212 164 213 0.88 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_17 PF12728.2 51 2.3e-06 16.6 0.3 1 1 1.4e-06 6.8e-06 15.1 0.0 3 25 192 214 192 227 0.89 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_11 PF08279.7 55 9.5e-07 17.2 0.1 1 1 4.4e-07 2.2e-06 16.0 0.1 4 37 180 212 177 213 0.81 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 MarR_2 PF12802.2 62 8.8e-06 14.1 0.0 1 1 3.2e-06 1.6e-05 13.3 0.0 6 44 177 213 172 215 0.82 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 TrmB PF01978.14 68 1.8e-05 13.2 0.1 1 1 7.4e-06 3.7e-05 12.2 0.1 7 45 175 213 174 217 0.88 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 UPF0122 PF04297.9 101 3.7e-10 28.5 0.0 1 1 1.8e-10 9.2e-10 27.3 0.0 10 70 166 229 160 232 0.85 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_4 - 236 HTH_20 PF12840.2 61 4.3e-06 15.3 0.0 1 1 1.5e-06 7.7e-06 14.5 0.0 13 46 179 212 166 213 0.89 # 1753 # 2460 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/df45034e-2a09-4b00-b15d-2b537c68d6ff # Target file: checkm_output/bins/pm1842/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1842/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/df45034e-2a09-4b00-b15d-2b537c68d6ff checkm_output/bins/pm1842/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:53:21 2017 # [ok]