# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 186 HTH_IclR PF09339.5 52 8.8e-07 17.7 0.2 1 1 4.6e-07 3.2e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_22 PF13309.1 64 1.7e-05 13.8 1.2 1 1 1.2e-05 8.3e-05 11.6 0.1 35 63 156 179 143 180 0.76 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_5 - 305 N6_Mtase PF02384.11 311 2.6e-05 12.5 0.0 1 2 0.067 0.47 -1.5 0.0 104 159 13 68 7 74 0.55 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_5 - 305 N6_Mtase PF02384.11 311 2.6e-05 12.5 0.0 2 2 1.3e-05 9.1e-05 10.7 0.0 31 66 246 280 234 291 0.85 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_2 - 186 HTH_40 PF14493.1 91 4.5e-05 12.9 0.6 1 1 2.1e-05 0.00015 11.2 0.1 7 32 152 177 147 183 0.89 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_38 PF13936.1 44 4.1e-07 18.7 0.0 1 1 5.9e-08 4.1e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_5 - 305 MethyltransfD12 PF02086.10 260 1.5e-05 13.7 0.0 1 1 3.7e-06 2.6e-05 12.9 0.0 16 55 257 295 247 303 0.80 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_5 - 305 Methyltransf_26 PF13659.1 117 4.3e-12 35.3 0.0 1 2 1.1e-05 7.6e-05 11.9 0.0 53 114 15 119 6 122 0.84 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_5 - 305 Methyltransf_26 PF13659.1 117 4.3e-12 35.3 0.0 2 2 1.4e-08 9.9e-08 21.3 0.0 2 39 262 298 261 304 0.88 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_5 - 305 UPF0020 PF01170.13 180 4.2e-07 18.8 0.0 1 2 0.0047 0.033 2.9 0.0 103 120 29 46 3 54 0.74 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_5 - 305 UPF0020 PF01170.13 180 4.2e-07 18.8 0.0 2 2 2.1e-06 1.5e-05 13.8 0.0 19 78 252 299 240 304 0.77 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_5 - 305 N6_N4_Mtase PF01555.13 231 3.5e-52 166.3 0.0 1 1 7e-53 4.9e-52 165.8 0.0 2 230 34 299 33 300 0.91 # 6607 # 7521 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_2 - 186 HTH_Tnp_IS630 PF01710.11 120 6.5e-06 15.0 0.0 1 1 1.9e-06 1.4e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_23 PF13384.1 50 3.1e-06 16.0 0.3 1 1 4.4e-07 3.1e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_7 PF02796.10 45 1.3e-14 43.1 0.5 1 1 5.1e-15 3.6e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_29 PF13551.1 112 7.5e-06 15.3 0.6 1 2 0.025 0.17 1.3 0.2 24 46 114 136 88 153 0.67 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_29 PF13551.1 112 7.5e-06 15.3 0.6 2 2 1e-05 7.1e-05 12.2 0.0 4 35 151 181 148 184 0.90 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_28 PF13518.1 52 9.2e-06 14.9 0.0 1 1 4.2e-06 3e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 TrmB PF01978.14 68 4e-06 15.7 0.0 1 1 1.1e-06 8e-06 14.8 0.0 19 44 155 180 150 181 0.89 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_20 PF12840.2 61 3e-07 19.4 0.1 1 2 0.0081 0.056 2.5 0.0 33 52 8 27 6 28 0.90 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 186 HTH_20 PF12840.2 61 3e-07 19.4 0.1 2 2 9.1e-06 6.4e-05 12.0 0.1 3 43 110 177 108 180 0.91 # 1488 # 2045 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c720296b-ef93-41c7-bba7-f9a47d2be8d6 # Target file: checkm_output/bins/pm1840/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1840/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c720296b-ef93-41c7-bba7-f9a47d2be8d6 checkm_output/bins/pm1840/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:53:18 2017 # [ok]