# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 106 zf-ribbon_3 PF13248.1 26 0.00036 9.5 7.9 1 1 0.0002 0.002 7.1 6.2 3 25 74 101 72 102 0.65 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_6 - 345 DDE_Tnp_1 PF01609.16 213 3e-25 78.6 0.0 1 1 4.6e-26 4.6e-25 78.0 0.0 4 190 91 306 88 315 0.93 # 4717 # 5751 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.438 1_10 - 106 Ribosomal_S27e PF01667.12 55 9.1e-06 14.9 1.3 1 1 1.6e-06 1.6e-05 14.1 1.3 5 33 71 99 68 103 0.90 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 zinc_ribbon_4 PF13717.1 36 8.1e-06 15.2 0.9 1 2 6.8e-05 0.00068 9.1 0.1 2 14 73 85 73 88 0.85 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 zinc_ribbon_4 PF13717.1 36 8.1e-06 15.2 0.9 2 2 0.0019 0.019 4.4 0.1 5 12 95 102 94 105 0.85 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 zinc_ribbon_5 PF13719.1 37 3.2e-06 16.4 0.4 1 2 4.3e-05 0.00043 9.6 0.0 2 14 73 85 72 88 0.84 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 zinc_ribbon_5 PF13719.1 37 3.2e-06 16.4 0.4 2 2 0.0014 0.014 4.8 0.1 5 12 95 102 94 106 0.85 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 Zn-ribbon_8 PF09723.5 42 0.00014 11.5 4.7 1 1 3.4e-05 0.00034 10.3 4.7 7 35 75 101 74 105 0.90 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 zinc_ribbon_2 PF13240.1 23 0.0019 7.5 7.5 1 2 0.014 0.14 1.6 0.1 1 9 75 83 75 85 0.75 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 106 zinc_ribbon_2 PF13240.1 23 0.0019 7.5 7.5 2 2 8.1e-05 0.00081 8.7 0.8 15 21 94 100 93 102 0.66 # 8673 # 8990 # 1 # ID=1_10;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.597 1_2 - 101 TIGR01455 TIGR01455 442 2.5e-34 108.0 0.5 1 1 2.9e-35 2.9e-34 107.7 0.5 1 77 6 81 6 83 0.96 # 1335 # 1637 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.574 1_6 - 345 Dimerisation PF08100.6 51 3.2e-05 13.4 0.2 1 1 2.4e-05 0.00024 10.7 0.0 16 47 29 65 27 66 0.80 # 4717 # 5751 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.438 1_3 - 272 Pterin_bind PF00809.17 210 2.8e-61 196.1 0.0 1 1 3.4e-62 3.4e-61 195.9 0.0 1 209 10 216 10 217 0.98 # 1724 # 2539 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.609 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/1273cdd8-91f4-4cdf-b016-cfb10085a7da # Target file: checkm_output/bins/pm1839/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1839/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1273cdd8-91f4-4cdf-b016-cfb10085a7da checkm_output/bins/pm1839/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:53:22 2017 # [ok]