# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 95 HTH_38 PF13936.1 44 6.3e-07 19.0 0.0 1 1 9.6e-08 1.2e-06 18.1 0.0 21 42 27 48 10 49 0.86 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 HTH_8 PF02954.14 42 0.00011 11.8 0.0 1 1 1.6e-05 0.0002 11.0 0.0 16 36 24 44 21 49 0.91 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 Sigma70_r4_2 PF08281.7 54 2.3e-05 13.9 0.0 1 1 4.2e-06 5.4e-05 12.7 0.0 21 47 21 47 11 49 0.86 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 Fe_dep_repress PF01325.14 60 0.0001 12.3 0.0 1 2 2.8e-05 0.00036 10.6 0.0 24 45 28 49 19 53 0.91 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 Fe_dep_repress PF01325.14 60 0.0001 12.3 0.0 2 2 0.083 1.1 -0.6 0.0 32 56 59 83 50 85 0.67 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_8 - 254 Peptidase_MA_2 PF13485.1 128 3.2e-05 14.0 0.1 1 1 8e-06 0.0001 12.4 0.1 3 41 52 91 50 110 0.73 # 4880 # 5641 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.416 1_7 - 100 CPSase_L_D3 PF02787.14 123 5.5e-05 13.0 0.0 1 1 1.9e-05 0.00025 10.9 0.0 66 109 7 51 1 61 0.85 # 4577 # 4876 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 95 HTH_Tnp_1 PF01527.15 76 9.9e-07 18.8 0.0 1 1 1.2e-07 1.6e-06 18.1 0.0 20 64 23 67 10 78 0.68 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 P22_Cro PF14549.1 60 7.1e-08 22.2 0.0 1 1 9.3e-09 1.2e-07 21.5 0.0 5 33 22 50 19 56 0.85 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_7 - 100 HTH_25 PF13413.1 62 7.3e-07 18.9 0.1 1 1 9.8e-08 1.3e-06 18.1 0.1 2 41 6 44 5 61 0.82 # 4577 # 4876 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_8 - 254 DUF955 PF06114.8 122 4.8e-28 87.4 0.4 1 1 6.7e-29 8.7e-28 86.6 0.4 1 117 33 160 33 164 0.94 # 4880 # 5641 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.416 1_7 - 100 HTH_3 PF01381.17 55 1.3e-15 47.1 0.2 1 1 2.9e-16 1.9e-15 46.6 0.2 1 54 6 60 6 61 0.97 # 4577 # 4876 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 95 HTH_3 PF01381.17 55 3.6e-06 16.9 0.0 1 1 2.3e-06 1.5e-05 14.9 0.0 7 31 24 48 20 56 0.89 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 HTH_23 PF13384.1 50 1.6e-09 27.3 0.0 1 1 2.4e-10 3.1e-09 26.4 0.0 5 40 11 49 8 60 0.87 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_7 - 100 HTH_19 PF12844.2 64 9.4e-15 44.6 0.0 1 1 1.1e-15 1.4e-14 44.0 0.0 2 61 4 64 3 67 0.94 # 4577 # 4876 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 95 HTH_29 PF13551.1 112 5.4e-05 13.4 0.0 1 1 7e-06 9.1e-05 12.7 0.0 12 45 27 60 13 68 0.79 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 HTH_28 PF13518.1 52 1.3e-05 15.2 0.0 1 1 1.6e-06 2.1e-05 14.6 0.0 12 35 26 49 13 62 0.78 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_7 - 100 HTH_31 PF13560.1 64 5.4e-15 45.5 0.0 1 1 1.2e-15 7.5e-15 45.0 0.0 2 59 2 59 2 71 0.91 # 4577 # 4876 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 95 HTH_31 PF13560.1 64 4.2e-05 13.8 0.0 1 1 1.7e-05 0.00011 12.5 0.0 10 35 11 47 9 52 0.83 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 HTH_Tnp_ISL3 PF13542.1 52 0.00011 11.4 0.0 1 1 1.5e-05 0.0002 10.6 0.0 30 50 29 49 26 51 0.90 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 MerR PF00376.18 38 2.7e-05 13.8 0.0 1 1 5.1e-06 6.6e-05 12.5 0.0 4 22 31 49 30 55 0.90 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 CENP-B_N PF04218.8 53 0.00012 11.6 0.0 1 1 1.5e-05 0.00019 10.9 0.0 25 44 29 48 25 56 0.90 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_7 - 100 HTH_26 PF13443.1 63 2.6e-08 24.1 0.1 1 1 2.9e-09 3.8e-08 23.6 0.1 1 59 5 63 5 67 0.94 # 4577 # 4876 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 95 HTH_17 PF12728.2 51 2.2e-06 18.0 0.1 1 1 3e-07 3.9e-06 17.2 0.0 5 24 30 53 28 63 0.80 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 95 Phage_terminase PF10668.4 60 2e-06 17.7 0.0 1 1 3e-07 3.9e-06 16.7 0.0 13 42 19 46 9 62 0.79 # 6207 # 6491 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.439 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d9627827-dcc1-4650-8fc7-b8c77a8cbbd5 # Target file: checkm_output/bins/pm1831/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1831/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d9627827-dcc1-4650-8fc7-b8c77a8cbbd5 checkm_output/bins/pm1831/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:53:13 2017 # [ok]