# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 187 HTH_22 PF13309.1 64 3.1e-06 16.8 0.5 1 2 0.044 0.48 0.1 0.0 23 38 70 85 57 85 0.79 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_22 PF13309.1 64 3.1e-06 16.8 0.5 2 2 3e-06 3.3e-05 13.5 0.0 47 64 166 183 164 183 0.92 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_9 - 226 TetR_N PF00440.18 47 3.3e-20 61.4 0.0 1 1 6.9e-21 7.6e-20 60.2 0.0 2 47 19 64 18 64 0.97 # 7609 # 8286 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_8 - 425 TIGR01394 TIGR01394 594 0.00018 9.2 0.0 1 1 2.4e-05 0.00027 8.6 0.0 408 486 292 368 286 379 0.84 # 6331 # 7605 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.630 1_11 - 187 NUMOD1 PF07453.8 37 8.6e-05 12.2 0.0 1 1 1.5e-05 0.00016 11.4 0.0 20 37 165 182 164 182 0.92 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_23 PF13384.1 50 1.2e-06 18.0 0.6 1 1 2.5e-07 2.8e-06 16.8 0.0 11 39 154 183 144 184 0.81 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_7 PF02796.10 45 3.2e-16 48.8 0.1 1 1 6.4e-17 7e-16 47.7 0.1 1 44 141 184 141 185 0.98 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_29 PF13551.1 112 3.6e-06 17.0 3.1 1 2 0.06 0.66 0.0 0.0 19 104 63 85 22 93 0.61 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_29 PF13551.1 112 3.6e-06 17.0 3.1 2 2 9e-06 9.9e-05 12.3 1.6 33 108 122 182 115 183 0.64 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_psq PF05225.11 45 3.2e-05 13.3 0.0 1 1 7.4e-06 8.2e-05 12.0 0.0 20 38 165 183 164 185 0.91 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_28 PF13518.1 52 4.2e-07 19.8 0.1 1 1 3.8e-08 4.2e-07 19.8 0.1 8 34 156 183 149 184 0.83 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_9 - 226 HTH_Tnp_1_2 PF13022.1 142 8.6e-05 12.2 0.0 1 1 1.2e-05 0.00013 11.6 0.0 22 77 24 73 5 79 0.76 # 7609 # 8286 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_11 - 187 HTH_10 PF04967.7 53 6.8e-06 15.5 0.3 1 2 0.066 0.73 -0.6 0.1 3 16 124 137 123 156 0.74 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_10 PF04967.7 53 6.8e-06 15.5 0.3 2 2 4.1e-06 4.5e-05 12.9 0.0 28 45 166 183 164 184 0.93 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 CENP-B_N PF04218.8 53 3.1e-06 16.4 0.1 1 1 6.4e-07 7e-06 15.3 0.0 18 43 157 182 154 186 0.86 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_2 - 168 DDE_Tnp_IS1 PF03400.8 131 4.5e-81 259.2 1.0 1 1 4.8e-82 5.3e-81 259.0 1.0 1 131 37 167 37 167 0.99 # 1118 # 1621 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 1_11 - 187 HTH_11 PF08279.7 55 6.7e-06 15.6 0.0 1 2 0.052 0.58 -0.2 0.0 33 47 74 88 72 94 0.67 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_11 - 187 HTH_11 PF08279.7 55 6.7e-06 15.6 0.0 2 2 4.6e-06 5e-05 12.8 0.0 19 37 165 183 162 184 0.91 # 8918 # 9478 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_9 - 226 HTH_20 PF12840.2 61 2.6e-05 13.8 0.1 1 1 1.8e-05 0.0002 11.0 0.0 21 46 30 55 18 63 0.85 # 7609 # 8286 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/8177765d-b049-4e1b-9c7e-732596031ee9 # Target file: checkm_output/bins/pm1821/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1821/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8177765d-b049-4e1b-9c7e-732596031ee9 checkm_output/bins/pm1821/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:51 2017 # [ok]