# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_52 - 388 KaiC PF06745.8 227 0.00069 11.4 0.0 1 1 1.5e-05 0.0012 10.6 0.0 14 59 147 191 137 201 0.76 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 3_1 - 305 HTH_IclR PF09339.5 52 1.5e-05 17.2 0.3 1 3 3.4e-06 0.00028 13.1 0.1 17 45 15 43 5 52 0.81 # 280 # 1194 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 3_1 - 305 HTH_IclR PF09339.5 52 1.5e-05 17.2 0.3 2 3 0.047 3.9 -0.1 0.0 10 25 47 62 46 65 0.85 # 280 # 1194 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 3_1 - 305 HTH_IclR PF09339.5 52 1.5e-05 17.2 0.3 3 3 0.051 4.2 -0.2 0.0 12 30 172 190 170 194 0.80 # 280 # 1194 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_52 - 388 ABC_tran PF00005.22 137 0.00011 15.1 0.0 1 1 2.7e-06 0.00022 14.2 0.0 16 33 157 174 149 217 0.83 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_52 - 388 FtsK_SpoIIIE PF01580.13 205 8.1e-05 14.8 0.0 1 1 1.9e-06 0.00016 13.8 0.0 41 59 155 173 129 184 0.85 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_52 - 388 MobB PF03205.9 140 0.00041 12.7 0.0 1 1 1e-05 0.00085 11.7 0.0 4 25 156 177 154 190 0.85 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_66 - 1017 AAA_19 PF13245.1 76 0.00042 12.7 0.0 1 1 1.6e-05 0.0013 11.1 0.0 14 31 492 508 481 518 0.90 # 40627 # 43677 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_52 - 388 AAA_23 PF13476.1 202 1.6e-06 21.2 0.1 1 1 4.2e-08 3.4e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_47 - 122 CPSase_L_D3 PF02787.14 123 0.00063 12.2 0.2 1 1 1.1e-05 0.00092 11.6 0.2 50 96 45 91 21 103 0.79 # 25086 # 25451 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.426 1_52 - 388 SMC_N PF02463.14 220 0.00096 11.0 0.0 1 1 2.1e-05 0.0017 10.2 0.0 26 50 154 178 147 195 0.81 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_73 - 696 TraG-D_C PF12696.2 128 0.00011 14.7 0.1 1 1 2.4e-06 0.00019 13.9 0.1 3 94 437 524 435 556 0.78 # 51349 # 53436 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 4_1 - 410 DDE_Tnp_1 PF01609.16 213 1.7e-28 92.2 0.0 1 1 2.9e-30 2.4e-28 91.7 0.0 3 212 97 337 95 338 0.93 # 14 # 1243 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.483 1_11 - 396 ACT PF01842.20 66 4.2e-05 15.7 0.4 1 3 0.038 3.1 0.1 0.0 13 27 203 217 203 217 0.90 # 4385 # 5572 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 1_11 - 396 ACT PF01842.20 66 4.2e-05 15.7 0.4 2 3 1.7e-05 0.0014 10.8 0.1 7 27 290 310 287 310 0.93 # 4385 # 5572 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 1_11 - 396 ACT PF01842.20 66 4.2e-05 15.7 0.4 3 3 0.076 6.2 -0.9 0.0 30 59 336 363 334 365 0.74 # 4385 # 5572 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 1_10 - 91 HTH_37 PF13744.1 80 0.0007 12.1 0.0 1 1 1.2e-05 0.00097 11.6 0.0 25 53 22 50 19 54 0.92 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_21 - 325 Hydantoinase_A PF01968.13 290 3.2e-08 25.5 2.0 1 2 5e-07 4.1e-05 15.4 0.1 67 96 158 186 144 195 0.82 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_21 - 325 Hydantoinase_A PF01968.13 290 3.2e-08 25.5 2.0 2 2 3.2e-05 0.0026 9.5 0.2 212 265 248 301 191 322 0.76 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_52 - 388 AAA_16 PF13191.1 185 0.00072 12.2 0.0 1 1 1.8e-05 0.0015 11.2 0.0 26 50 154 178 140 211 0.85 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_52 - 388 AAA_22 PF13401.1 131 2.4e-06 20.4 0.0 1 1 1.4e-07 5.9e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_66 - 1017 AAA_22 PF13401.1 131 0.00017 14.4 0.0 1 1 1.3e-05 0.00055 12.7 0.0 8 73 492 561 486 594 0.70 # 40627 # 43677 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_33 - 287 Methyltransf_27 PF13708.1 194 1.1e-68 223.2 0.0 1 1 2.3e-70 1.9e-68 222.5 0.0 2 194 89 282 88 282 0.97 # 18585 # 19445 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_52 - 388 AAA_29 PF13555.1 62 7.3e-06 18.1 0.1 1 1 2.2e-07 1.8e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 3_1 - 305 HTH_1 PF00126.22 60 1.8e-19 62.0 0.7 1 1 3.7e-21 3.1e-19 61.2 0.7 2 59 5 62 4 63 0.96 # 280 # 1194 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 89 HTH_3 PF01381.17 55 9.1e-07 21.4 0.0 1 1 4.2e-08 1.2e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_10 - 91 HTH_3 PF01381.17 55 5.2e-05 15.7 0.0 1 1 2.7e-06 7.4e-05 15.2 0.0 2 32 21 51 21 55 0.90 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_25 - 160 HTH_3 PF01381.17 55 0.00012 14.6 0.1 1 2 0.0022 0.06 5.9 0.0 2 20 15 33 14 37 0.91 # 13815 # 14294 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_25 - 160 HTH_3 PF01381.17 55 0.00012 14.6 0.1 2 2 0.0016 0.045 6.3 0.0 1 23 96 118 96 120 0.89 # 13815 # 14294 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_30 - 89 HTH_23 PF13384.1 50 5.7e-06 18.6 0.0 1 1 2.1e-07 8.7e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_10 - 91 HTH_23 PF13384.1 50 6.6e-06 18.4 0.1 1 1 2.7e-07 1.1e-05 17.7 0.1 12 38 23 49 19 54 0.85 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_10 - 91 HTH_19 PF12844.2 64 7.1e-06 18.7 0.0 1 1 2.3e-07 9.3e-06 18.3 0.0 5 35 21 51 21 66 0.92 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_30 - 89 HTH_19 PF12844.2 64 6.9e-05 15.5 0.0 1 1 2.3e-06 9.3e-05 15.1 0.0 4 39 33 69 30 73 0.85 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_73 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 1 3 1.7e-05 0.0014 9.8 0.0 16 36 134 154 125 158 0.88 # 51349 # 53436 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_73 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 2 3 9.3e-05 0.0076 7.4 0.1 93 140 235 281 229 303 0.80 # 51349 # 53436 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_73 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 3 3 0.083 6.8 -2.3 0.0 293 323 482 512 405 546 0.58 # 51349 # 53436 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_66 - 1017 AAA_18 PF13238.1 129 6.9e-05 15.8 1.3 1 1 3.5e-06 0.00029 13.8 0.0 2 19 492 509 492 571 0.76 # 40627 # 43677 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_6 - 435 IMS_HHH PF11798.3 32 0.00041 13.1 0.0 1 1 1.5e-05 0.0012 11.6 0.0 12 32 192 212 182 212 0.83 # 1512 # 2816 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_52 - 388 DUF87 PF01935.12 229 7.5e-05 15.2 0.0 1 1 1.8e-06 0.00015 14.2 0.0 28 45 157 174 155 188 0.89 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_30 - 89 HTH_28 PF13518.1 52 5.1e-05 15.9 0.0 1 1 8.7e-07 7.1e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_52 - 388 Miro PF08477.8 119 0.00078 12.6 0.0 1 1 2.1e-05 0.0018 11.5 0.0 4 28 157 186 156 220 0.72 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_10 - 91 HTH_31 PF13560.1 64 2.3e-07 23.6 0.4 1 1 1.4e-08 3.8e-07 22.9 0.3 7 36 21 50 17 65 0.89 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_25 - 160 HTH_31 PF13560.1 64 5.5e-07 22.4 1.2 1 2 0.0035 0.096 5.6 0.0 6 33 14 41 12 48 0.88 # 13815 # 14294 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_25 - 160 HTH_31 PF13560.1 64 5.5e-07 22.4 1.2 2 2 2.8e-06 7.6e-05 15.6 0.3 4 39 94 129 91 135 0.88 # 13815 # 14294 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_30 - 89 HTH_31 PF13560.1 64 1.7e-06 20.9 0.0 1 1 8.4e-08 2.3e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_66 - 1017 DUF2075 PF09848.4 352 0.00029 12.5 0.0 1 1 1.1e-05 0.0009 10.8 0.0 5 22 492 509 489 537 0.87 # 40627 # 43677 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_52 - 388 T2SE PF00437.15 272 2.3e-23 75.0 0.0 1 1 4.6e-25 3.8e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_21 - 325 StbA PF06406.6 318 5.9e-157 514.1 0.2 1 1 8.1e-159 6.6e-157 513.9 0.2 1 318 1 322 1 322 0.99 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_52 - 388 NACHT PF05729.7 166 0.00028 13.2 0.0 1 1 6.6e-06 0.00054 12.3 0.0 4 29 156 181 154 188 0.83 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_66 - 1017 AAA_17 PF13207.1 121 5e-05 16.8 0.0 1 1 4.3e-06 0.00035 14.0 0.0 3 27 492 522 492 581 0.72 # 40627 # 43677 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_52 - 388 AAA_25 PF13481.1 194 4.7e-06 18.7 0.0 1 1 1.3e-07 1.1e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_40 - 147 RepA_N PF06970.6 76 0.00066 12.1 0.0 1 1 1.6e-05 0.0013 11.2 0.0 15 44 56 85 53 90 0.92 # 21898 # 22338 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_21 - 325 Hydant_A_N PF05378.8 176 0.00054 12.1 3.4 1 4 0.069 5.6 -1.0 0.0 1 19 2 20 2 52 0.83 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_21 - 325 Hydant_A_N PF05378.8 176 0.00054 12.1 3.4 2 4 0.057 4.7 -0.7 0.0 108 154 38 86 17 98 0.66 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_21 - 325 Hydant_A_N PF05378.8 176 0.00054 12.1 3.4 3 4 0.057 4.7 -0.7 0.0 95 129 113 147 89 153 0.76 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_21 - 325 Hydant_A_N PF05378.8 176 0.00054 12.1 3.4 4 4 3.6e-05 0.003 9.7 0.2 2 51 170 217 169 226 0.82 # 11217 # 12191 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_30 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.0003 12.6 0.0 1 1 5e-06 0.00041 12.2 0.0 19 49 35 64 33 65 0.91 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_30 - 89 CENP-B_N PF04218.8 53 0.0012 11.0 0.0 1 1 1.9e-05 0.0016 10.6 0.0 24 49 44 69 34 72 0.88 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_52 - 388 Ribosomal_S5 PF00333.15 67 2.5e-05 16.7 0.1 1 2 0.00091 0.075 5.5 0.0 26 45 84 103 76 114 0.83 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_52 - 388 Ribosomal_S5 PF00333.15 67 2.5e-05 16.7 0.1 2 2 0.00012 0.0096 8.4 0.0 21 54 242 274 230 278 0.91 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_52 - 388 RNA_helicase PF00910.17 107 0.00092 12.1 0.0 1 1 2.5e-05 0.002 10.9 0.0 3 26 157 180 156 197 0.81 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_10 - 91 Mor PF08765.6 108 0.00061 12.2 0.0 1 1 9.2e-06 0.00075 11.9 0.0 71 93 27 49 18 57 0.85 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_30 - 89 Phage_CII PF05269.6 91 0.00059 12.5 0.0 1 1 9.2e-06 0.00075 12.2 0.0 17 45 36 64 32 81 0.83 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_52 - 388 ATP_bind_1 PF03029.12 238 0.00067 11.8 0.0 1 1 1.3e-05 0.0011 11.2 0.0 1 25 157 181 157 191 0.84 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_57 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00021 13.9 0.0 1 1 2.8e-06 0.00023 13.8 0.0 29 64 18 52 5 58 0.83 # 34518 # 34715 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_10 - 91 HTH_26 PF13443.1 63 9.3e-05 15.3 0.0 1 1 3.3e-06 0.00014 14.8 0.0 4 34 22 52 21 56 0.91 # 4094 # 4366 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 1_30 - 89 HTH_26 PF13443.1 63 0.00022 14.1 0.0 1 1 7.2e-06 0.0003 13.7 0.0 11 47 43 78 33 82 0.90 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 3_1 - 305 MarR_2 PF12802.2 62 0.0001 14.6 0.1 1 1 8e-06 0.00066 12.0 0.1 25 48 20 43 8 52 0.89 # 280 # 1194 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 89 HTH_Crp_2 PF13545.1 76 0.00037 12.9 0.0 1 1 6.6e-06 0.00054 12.4 0.0 26 50 40 64 32 65 0.88 # 16114 # 16380 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_66 - 1017 AAA_10 PF12846.2 304 6.8e-41 133.2 0.1 1 1 5.5e-42 1.5e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 40627 # 43677 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_73 - 696 AAA_10 PF12846.2 304 5.2e-10 31.8 0.0 1 1 2.8e-11 7.7e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 51349 # 53436 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_52 - 388 AAA_10 PF12846.2 304 1.2e-06 20.8 0.0 1 1 2.5e-07 6.8e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_43 - 145 SSB PF00436.20 104 2.7e-32 103.4 0.2 1 1 3.8e-34 3.1e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 23114 # 23548 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_52 - 388 GTP_EFTU PF00009.22 188 0.00088 11.4 0.0 1 1 2e-05 0.0016 10.5 0.0 8 34 157 183 155 195 0.87 # 29310 # 30473 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d10ad908-c656-4d3d-9b93-5e5a88fa6e2d # Target file: checkm_output/bins/pm1811/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1811/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d10ad908-c656-4d3d-9b93-5e5a88fa6e2d checkm_output/bins/pm1811/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:39 2017 # [ok]