# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 316 HTH_IclR PF09339.5 52 2.7e-05 13.3 0.1 1 2 0.014 0.12 1.6 0.1 15 29 24 38 22 39 0.86 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_IclR PF09339.5 52 2.7e-05 13.3 0.1 2 2 6e-05 0.00054 9.1 0.0 15 39 286 310 281 312 0.86 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_38 PF13936.1 44 1.6e-09 26.8 0.0 1 2 0.069 0.62 -0.7 0.0 17 31 24 38 21 39 0.85 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_38 PF13936.1 44 1.6e-09 26.8 0.0 2 2 1.3e-09 1.2e-08 24.0 0.0 15 43 284 312 281 313 0.92 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 Sigma70_r4_2 PF08281.7 54 1e-07 20.9 0.0 1 1 4.6e-08 4.2e-07 19.0 0.0 18 49 282 312 281 313 0.90 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 Terminase_5 PF06056.7 58 3.9e-07 19.2 0.0 1 2 0.059 0.53 -0.5 0.0 13 24 27 38 25 43 0.78 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 Terminase_5 PF06056.7 58 3.9e-07 19.2 0.0 2 2 3.8e-07 3.5e-06 16.1 0.0 12 38 288 314 284 314 0.95 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 GerE PF00196.14 58 6.6e-12 34.2 0.0 1 1 1.6e-12 1.4e-11 33.1 0.0 10 41 281 312 280 312 0.96 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_5 - 421 DDE_Tnp_1 PF01609.16 213 7.2e-36 113.2 0.2 1 1 1.7e-36 1.5e-35 112.1 0.0 6 213 128 362 123 362 0.96 # 2540 # 3802 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 316 HTH_3 PF01381.17 55 1.5e-06 17.6 0.0 1 1 5.3e-07 4.7e-06 16.0 0.0 5 31 285 311 283 315 0.86 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_5 - 421 DDE_Tnp_1_4 PF13701.1 449 2.9e-28 87.6 3.5 1 2 0.0052 0.046 1.2 0.0 11 42 5 36 3 62 0.72 # 2540 # 3802 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_5 - 421 DDE_Tnp_1_4 PF13701.1 449 2.9e-28 87.6 3.5 2 2 1.5e-28 1.3e-27 85.4 2.2 137 438 122 418 41 420 0.82 # 2540 # 3802 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 316 HTH_23 PF13384.1 50 1.1e-10 30.5 0.0 1 2 0.01 0.09 2.2 0.0 16 28 23 38 7 39 0.86 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_23 PF13384.1 50 1.1e-10 30.5 0.0 2 2 5.6e-10 5e-09 25.2 0.0 10 40 282 312 281 313 0.95 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_7 PF02796.10 45 1.1e-07 21.2 0.0 1 1 3.3e-08 3e-07 19.8 0.0 1 38 266 306 266 311 0.91 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_19 PF12844.2 64 2e-05 14.2 0.0 1 1 5.3e-06 4.8e-05 13.0 0.0 9 33 286 310 283 314 0.90 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_29 PF13551.1 112 2.9e-05 13.8 0.4 1 2 0.065 0.59 -0.1 0.0 72 105 220 248 204 255 0.74 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_29 PF13551.1 112 2.9e-05 13.8 0.4 2 2 4.9e-05 0.00044 10.0 0.0 4 35 282 312 280 314 0.92 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_28 PF13518.1 52 1e-05 15.1 0.0 1 1 3.5e-06 3.2e-05 13.5 0.0 4 35 281 312 281 312 0.92 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_24 PF13412.1 48 7.4e-07 18.1 0.0 1 1 1.5e-07 1.4e-06 17.3 0.0 17 40 289 312 281 312 0.90 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_10 PF04967.7 53 1.7e-05 14.0 0.0 1 2 0.082 0.74 -0.9 0.0 21 37 147 163 146 170 0.87 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_10 PF04967.7 53 1.7e-05 14.0 0.0 2 2 2.4e-05 0.00022 10.4 0.0 25 46 291 312 287 313 0.90 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_31 PF13560.1 64 1.1e-05 15.1 0.6 1 2 0.00045 0.0041 6.9 0.0 5 25 6 38 5 66 0.86 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_31 PF13560.1 64 1.1e-05 15.1 0.6 2 2 0.0011 0.01 5.7 0.0 12 39 287 314 248 315 0.79 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 MarR_2 PF12802.2 62 1.5e-05 14.2 0.1 1 2 0.083 0.75 -0.8 0.0 21 32 27 38 12 39 0.81 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 MarR_2 PF12802.2 62 1.5e-05 14.2 0.1 2 2 9.6e-06 8.6e-05 11.8 0.0 21 44 289 312 275 312 0.82 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_8 - 316 HTH_5 PF01022.15 47 1.2e-06 17.8 0.0 1 1 2.5e-07 2.2e-06 16.8 0.0 16 37 290 311 282 312 0.88 # 5870 # 6817 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/3a95ee0e-87be-4ec2-aae6-a19a4984c66e # Target file: checkm_output/bins/pm1806/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1806/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3a95ee0e-87be-4ec2-aae6-a19a4984c66e checkm_output/bins/pm1806/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:32 2017 # [ok]