# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_1 - 66 Zn_Tnp_IS1 PF03811.8 36 2.1e-24 76.5 4.5 1 1 1.4e-25 3e-24 76.0 4.5 1 36 1 36 1 36 0.99 # 2 # 199 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_12 - 66 Zn_Tnp_IS1 PF03811.8 36 2.1e-24 76.5 4.5 1 1 1.4e-25 3e-24 76.0 4.5 1 36 1 36 1 36 0.99 # 9426 # 9623 # 1 # ID=3_12;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_8 - 202 HTH_38 PF13936.1 44 2.1e-08 25.4 1.0 1 1 3.5e-09 7.5e-08 23.6 0.0 15 44 168 197 160 197 0.93 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_4 - 215 HTH_38 PF13936.1 44 0.00029 12.2 0.1 1 1 1.3e-05 0.00029 12.2 0.1 28 43 191 206 171 207 0.80 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_3 - 207 MobB PF03205.9 140 1.1e-06 20.1 0.4 1 1 1.4e-07 5.8e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 CbiA PF01656.18 195 4.5e-29 92.9 1.6 1 1 2.7e-30 1.1e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 202 Sigma70_r4_2 PF08281.7 54 5.6e-07 20.8 0.0 1 1 4e-08 1.7e-06 19.2 0.0 17 44 165 191 165 199 0.86 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_3 - 279 Rep_3 PF01051.16 222 5.3e-30 96.3 6.2 1 1 1.5e-31 6.2e-30 96.1 6.2 1 222 8 259 8 259 0.88 # 967 # 1803 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.361 3_3 - 207 AAA_24 PF13479.1 213 0.00027 12.3 0.6 1 2 1.7e-05 0.00072 10.9 0.1 12 88 11 95 3 99 0.81 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_24 PF13479.1 213 0.00027 12.3 0.6 2 2 0.078 3.3 -1.1 0.0 168 206 118 156 115 164 0.79 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_30 PF13604.1 196 0.00015 13.1 0.4 1 1 7.4e-06 0.00032 12.0 0.1 26 106 10 88 2 97 0.75 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 202 GerE PF00196.14 58 1.3e-05 16.3 0.0 1 1 5.1e-07 2.2e-05 15.5 0.0 11 35 166 190 165 201 0.88 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_3 - 207 MipZ PF09140.6 261 7.7e-15 46.3 0.9 1 2 1.3e-11 5.7e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 MipZ PF09140.6 261 7.7e-15 46.3 0.9 2 2 8.2e-07 3.5e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_5 - 308 DDE_Tnp_1 PF01609.16 213 4.6e-24 76.8 0.8 1 1 1.4e-25 6e-24 76.4 0.8 4 205 115 286 112 293 0.89 # 2372 # 3295 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 3_3 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 1 2 1.8e-05 0.00079 10.6 0.0 10 38 12 41 3 47 0.86 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 2 2 0.019 0.84 0.7 0.1 114 146 115 147 71 170 0.78 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 SRP54 PF00448.17 196 4.5e-05 14.6 0.4 1 1 3.6e-06 0.00015 12.9 0.3 11 54 12 50 2 142 0.73 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_4 - 215 HTH_23 PF13384.1 50 2.8e-09 28.2 0.1 1 1 3e-10 6.5e-09 27.0 0.1 5 46 171 210 167 214 0.89 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 2_8 - 202 HTH_23 PF13384.1 50 5.2e-08 24.2 0.2 1 1 2.4e-09 5.2e-08 24.2 0.2 10 42 166 198 160 201 0.92 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_3 - 207 Fer4_NifH PF00142.13 273 6.8e-07 20.4 0.0 1 1 2.8e-08 1.2e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_4 - 215 HTH_7 PF02796.10 45 3e-08 25.2 1.8 1 2 0.00081 0.017 6.8 0.0 2 26 79 104 79 105 0.86 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_4 - 215 HTH_7 PF02796.10 45 3e-08 25.2 1.8 2 2 4e-07 8.5e-06 17.4 0.0 1 38 165 200 165 201 0.96 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 2_8 - 202 HTH_7 PF02796.10 45 6.5e-06 17.7 0.0 1 1 8.7e-07 1.9e-05 16.3 0.0 13 38 165 190 156 190 0.93 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 66 zinc_ribbon_4 PF13717.1 36 9e-06 17.1 3.7 1 1 1.1e-06 2.3e-05 15.8 3.7 3 35 6 39 5 40 0.86 # 2 # 199 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_12 - 66 zinc_ribbon_4 PF13717.1 36 9e-06 17.1 3.7 1 1 1.1e-06 2.3e-05 15.8 3.7 3 35 6 39 5 40 0.86 # 9426 # 9623 # 1 # ID=3_12;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_8 - 202 HTH_29 PF13551.1 112 1.8e-05 16.6 0.5 1 2 0.014 0.31 3.0 0.0 51 88 43 87 25 101 0.62 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 202 HTH_29 PF13551.1 112 1.8e-05 16.6 0.5 2 2 3.8e-05 0.00082 11.3 0.2 4 36 166 197 165 200 0.89 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_4 - 215 HTH_29 PF13551.1 112 0.00035 12.5 3.3 1 1 6e-05 0.0013 10.6 0.0 3 35 175 206 173 212 0.92 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_3 - 207 DUF1611 PF07755.6 301 1.6e-06 18.6 0.3 1 1 5.8e-08 2.5e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 TIGR01968 TIGR01968 261 1.7e-12 38.6 1.6 1 2 1e-09 4.4e-08 24.1 0.0 2 39 2 39 1 47 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 TIGR01968 TIGR01968 261 1.7e-12 38.6 1.6 2 2 1.2e-06 5.3e-05 14.0 0.3 109 179 73 145 56 196 0.76 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_1 - 66 HTH_Tnp_IS1 PF12759.2 46 2.4e-15 47.5 0.1 1 1 1.9e-16 4.1e-15 46.8 0.1 1 24 43 66 43 66 0.98 # 2 # 199 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_12 - 66 HTH_Tnp_IS1 PF12759.2 46 2.4e-15 47.5 0.1 1 1 1.9e-16 4.1e-15 46.8 0.1 1 24 43 66 43 66 0.98 # 9426 # 9623 # 1 # ID=3_12;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_8 - 202 HTH_28 PF13518.1 52 1.1e-08 26.7 0.4 1 1 1.2e-09 2.6e-08 25.5 0.4 4 38 165 199 165 201 0.92 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_4 - 215 HTH_28 PF13518.1 52 5.8e-06 18.0 0.1 1 1 8.5e-07 1.8e-05 16.4 0.1 4 35 175 206 172 209 0.92 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 2_8 - 202 HTH_24 PF13412.1 48 1e-05 16.6 0.0 1 1 5.2e-07 2.2e-05 15.6 0.0 16 40 172 196 168 196 0.89 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 202 HTH_10 PF04967.7 53 0.00019 12.8 0.0 1 1 1.3e-05 0.00056 11.3 0.0 27 46 177 196 173 199 0.86 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_3 - 207 LpxK PF02606.9 326 2.3e-05 15.1 0.1 1 1 8.4e-07 3.6e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 202 HTH_31 PF13560.1 64 0.001 11.0 4.3 1 2 0.023 0.99 1.5 0.1 15 38 23 56 16 77 0.73 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 202 HTH_31 PF13560.1 64 0.001 11.0 4.3 2 2 4.9e-05 0.0021 10.0 0.5 11 39 170 198 142 201 0.90 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_3 - 207 AAA_17 PF13207.1 121 3.7e-05 16.3 0.0 1 1 1.1e-06 4.9e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 VirC1 PF07015.6 231 3.2e-15 47.5 0.2 1 1 1.5e-16 6.4e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_8 - 202 HTH_Tnp_ISL3 PF13542.1 52 1.8e-05 15.7 0.2 1 1 1e-06 4.3e-05 14.4 0.2 29 51 175 197 166 198 0.85 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 2_8 - 202 CENP-B_N PF04218.8 53 6.8e-05 14.0 0.0 1 1 7.9e-06 0.00017 12.8 0.0 21 45 172 196 165 199 0.87 # 5390 # 5995 # -1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 3_4 - 215 CENP-B_N PF04218.8 53 9.7e-05 13.5 0.1 1 1 1.1e-05 0.00025 12.2 0.1 14 46 175 207 174 212 0.95 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_3 - 207 ArgK PF03308.11 267 4.7e-05 13.9 0.0 1 1 2.5e-06 0.00011 12.7 0.0 39 72 12 45 5 53 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 NTPase_1 PF03266.10 168 0.00016 13.1 0.1 1 1 1.1e-05 0.00049 11.5 0.0 7 58 10 66 5 94 0.80 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 4_1 - 119 DDE_Tnp_IS1 PF03400.8 131 2e-73 236.4 1.0 1 1 5.1e-75 2.2e-73 236.2 1.0 7 125 1 119 1 119 1.00 # 3 # 359 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 2_1 - 66 zinc_ribbon_5 PF13719.1 37 3.1e-06 18.5 3.3 1 1 3.8e-07 8.2e-06 17.1 3.3 3 36 6 40 5 41 0.83 # 2 # 199 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_12 - 66 zinc_ribbon_5 PF13719.1 37 3.1e-06 18.5 3.3 1 1 3.8e-07 8.2e-06 17.1 3.3 3 36 6 40 5 41 0.83 # 9426 # 9623 # 1 # ID=3_12;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_3 - 207 ATP_bind_1 PF03029.12 238 2e-05 15.9 0.0 1 1 8.4e-07 3.6e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_4 - 215 HTH_17 PF12728.2 51 7.6e-05 14.7 0.1 1 2 0.0096 0.41 2.7 0.0 16 29 89 102 88 112 0.85 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_4 - 215 HTH_17 PF12728.2 51 7.6e-05 14.7 0.1 2 2 0.00013 0.0057 8.7 0.0 5 25 187 207 185 212 0.89 # 1594 # 2238 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 2_1 - 66 Zn_Tnp_IS1595 PF12760.2 46 4.2e-05 15.1 2.3 1 1 3.2e-06 6.9e-05 14.4 2.3 21 46 8 38 5 38 0.74 # 2 # 199 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_12 - 66 Zn_Tnp_IS1595 PF12760.2 46 4.2e-05 15.1 2.3 1 1 3.2e-06 6.9e-05 14.4 2.3 21 46 8 38 5 38 0.74 # 9426 # 9623 # 1 # ID=3_12;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_5 - 308 DDE_Tnp_1_5 PF13737.1 112 9.1e-49 156.1 0.1 1 1 1.2e-49 5.2e-48 153.6 0.0 1 112 19 130 19 130 0.96 # 2372 # 3295 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 2_2 - 396 AAA_10 PF12846.2 304 1.2e-36 118.3 0.0 1 1 8.3e-38 1.8e-36 117.8 0.0 3 294 17 303 16 310 0.93 # 274 # 1461 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 3_3 - 207 AAA_10 PF12846.2 304 5.6e-06 17.6 0.0 1 1 4.7e-07 1e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 ArsA_ATPase PF02374.10 305 1.2e-08 26.0 0.2 1 1 4.8e-10 2.1e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_1 - 66 DUF2387 PF09526.5 71 3.5e-05 15.5 0.2 1 1 2e-06 4.3e-05 15.2 0.2 10 46 7 46 5 62 0.74 # 2 # 199 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_12 - 66 DUF2387 PF09526.5 71 3.5e-05 15.5 0.2 1 1 2e-06 4.3e-05 15.2 0.2 10 46 7 46 5 62 0.74 # 9426 # 9623 # 1 # ID=3_12;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_3 - 207 AAA_31 PF13614.1 157 7.5e-09 27.4 0.3 1 2 9.4e-09 4e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 3_3 - 207 AAA_31 PF13614.1 157 7.5e-09 27.4 0.3 2 2 0.0047 0.2 3.3 0.0 115 152 74 109 58 114 0.83 # 688 # 1308 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/5d043c7b-a237-4be8-9fd0-6e08416410f2 # Target file: checkm_output/bins/pm1802/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1802/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5d043c7b-a237-4be8-9fd0-6e08416410f2 checkm_output/bins/pm1802/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:31 2017 # [ok]