# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_79 - 388 KaiC PF06745.8 227 0.00064 11.5 0.0 1 1 1.4e-05 0.0011 10.7 0.0 11 59 144 191 137 201 0.76 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 ABC_tran PF00005.22 137 9.6e-05 15.4 0.0 1 1 4.4e-06 0.00018 14.5 0.0 15 33 156 174 147 217 0.82 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 ABC_tran PF00005.22 137 0.00043 13.2 0.2 1 1 4.1e-05 0.0017 11.3 0.1 8 31 98 121 95 132 0.86 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_53 - 141 HTH_22 PF13309.1 64 0.00016 14.1 0.1 1 1 4.8e-06 0.0004 12.8 0.1 44 63 5 24 2 25 0.89 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_53 - 141 DUF134 PF02001.11 106 3.6e-05 16.3 0.1 1 1 8.2e-07 6.8e-05 15.4 0.1 59 105 5 51 2 52 0.91 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_59 - 292 rve_3 PF13683.1 67 3.9e-09 28.6 0.0 1 1 9.2e-11 7.6e-09 27.7 0.0 2 66 166 238 165 238 0.93 # 39651 # 40526 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_79 - 388 FtsK_SpoIIIE PF01580.13 205 8.7e-05 14.7 0.0 1 1 2.1e-06 0.00017 13.7 0.0 41 59 155 173 135 184 0.85 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_51 - 202 HTH_38 PF13936.1 44 4.1e-08 25.4 1.0 1 1 1.7e-09 1.5e-07 23.6 0.0 15 44 168 197 160 197 0.93 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_79 - 388 MobB PF03205.9 140 0.00044 12.6 0.0 1 1 1e-05 0.00086 11.7 0.0 4 25 156 177 154 190 0.85 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 83 HTH_8 PF02954.14 42 8.4e-06 18.0 0.1 1 1 3.6e-07 1.5e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_53 - 141 HTH_8 PF02954.14 42 0.00054 12.2 0.0 1 1 2.6e-05 0.0011 11.2 0.0 19 37 4 22 2 24 0.89 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_66 - 1017 AAA_19 PF13245.1 76 0.00031 13.2 0.0 1 1 2.3e-05 0.00097 11.6 0.0 14 32 492 509 481 523 0.86 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 260 AAA_19 PF13245.1 76 0.00056 12.3 0.2 1 1 5.3e-05 0.0022 10.5 0.0 11 35 103 126 95 157 0.81 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 CbiA PF01656.18 195 0.0008 11.5 0.0 1 1 1.3e-05 0.001 11.1 0.0 3 42 105 145 104 254 0.75 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_51 - 202 Sigma70_r4_2 PF08281.7 54 1.1e-06 20.8 0.0 1 1 4e-08 3.3e-06 19.2 0.0 17 44 165 191 165 199 0.86 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_59 - 292 rve PF00665.21 120 2.9e-23 74.9 0.0 1 1 1.3e-24 1.1e-22 73.0 0.0 3 119 68 193 67 194 0.96 # 39651 # 40526 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_58 - 260 AFG1_ATPase PF03969.11 362 0.00025 12.5 0.0 1 1 5.8e-06 0.00048 11.6 0.0 64 214 103 251 81 258 0.78 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_23 PF13476.1 202 2e-06 20.9 0.8 1 1 3.9e-08 3.2e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_24 PF13479.1 213 0.0011 11.2 0.1 1 1 3e-05 0.0025 10.0 0.1 5 23 103 121 99 127 0.85 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_1 - 122 CPSase_L_D3 PF02787.14 123 0.00067 12.1 0.1 1 1 1.2e-05 0.00098 11.6 0.1 50 96 45 91 21 101 0.79 # 168 # 533 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.415 1_79 - 388 SMC_N PF02463.14 220 0.00084 11.2 0.0 1 1 1.8e-05 0.0015 10.4 0.0 25 50 153 178 146 195 0.81 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_51 - 202 GerE PF00196.14 58 2.5e-05 16.3 0.0 1 1 5.1e-07 4.3e-05 15.5 0.0 11 35 166 190 165 201 0.88 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_50 - 696 TraG-D_C PF12696.2 128 0.00011 14.7 0.1 1 1 2.4e-06 0.0002 13.9 0.1 3 94 437 524 435 556 0.78 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_58 - 260 Bac_DnaA PF00308.13 219 4.3e-09 28.9 0.0 1 1 7.8e-11 6.4e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_56 - 440 DDE_Tnp_1 PF01609.16 213 3.4e-19 61.9 0.0 1 2 0.019 1.5 0.9 0.0 6 41 138 172 135 227 0.77 # 36038 # 37357 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 1_56 - 440 DDE_Tnp_1 PF01609.16 213 3.4e-19 61.9 0.0 2 2 3.7e-20 3e-18 58.7 0.0 6 213 264 433 259 433 0.85 # 36038 # 37357 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 1_35 - 425 ACT PF01842.20 66 3.1e-05 16.1 0.5 1 3 0.039 3.3 0.1 0.0 13 27 232 246 231 246 0.91 # 17535 # 18809 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_35 - 425 ACT PF01842.20 66 3.1e-05 16.1 0.5 2 3 1.3e-05 0.0011 11.2 0.0 7 27 319 339 316 339 0.93 # 17535 # 18809 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_35 - 425 ACT PF01842.20 66 3.1e-05 16.1 0.5 3 3 0.056 4.6 -0.4 0.0 30 59 365 392 363 394 0.75 # 17535 # 18809 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_58 - 260 AAA PF00004.24 132 1.8e-08 27.3 0.0 1 1 4.1e-10 3.4e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_29 - 83 HTH_37 PF13744.1 80 3.6e-05 16.2 0.0 1 1 1.8e-06 7.3e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_36 - 86 HTH_37 PF13744.1 80 0.00026 13.5 0.0 1 1 8.8e-06 0.00036 13.0 0.0 25 53 22 50 19 55 0.91 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_24 - 325 Hydantoinase_A PF01968.13 290 8.3e-08 24.2 3.8 1 2 4.7e-07 3.9e-05 15.4 0.1 67 96 158 186 140 195 0.83 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 325 Hydantoinase_A PF01968.13 290 8.3e-08 24.2 3.8 2 2 2.6e-05 0.0021 9.8 0.2 212 266 248 302 191 321 0.76 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_53 - 141 MerR_1 PF13411.1 69 0.00062 12.2 0.1 1 2 0.00014 0.011 8.2 0.0 2 26 5 29 4 43 0.90 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_53 - 141 MerR_1 PF13411.1 69 0.00062 12.2 0.1 2 2 0.012 0.96 2.0 0.0 39 55 105 121 67 124 0.73 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_58 - 260 AAA_16 PF13191.1 185 1.2e-05 18.0 2.4 1 2 2.4e-06 9.9e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_16 PF13191.1 185 1.2e-05 18.0 2.4 2 2 0.071 2.9 0.4 0.0 124 162 143 175 125 192 0.74 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_16 PF13191.1 185 0.00053 12.6 0.0 1 1 2.5e-05 0.001 11.7 0.0 25 50 153 178 141 211 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_22 PF13401.1 131 1e-06 21.6 0.0 1 2 1.2e-05 0.00034 13.4 0.1 4 28 101 125 98 148 0.75 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_22 PF13401.1 131 1e-06 21.6 0.0 2 2 0.0025 0.068 6.0 0.0 77 101 151 178 124 201 0.64 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_22 PF13401.1 131 3.5e-06 19.9 0.0 1 1 2.9e-07 8e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 1017 AAA_22 PF13401.1 131 0.00032 13.5 0.0 1 1 3.5e-05 0.00098 11.9 0.0 8 69 492 557 486 594 0.67 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 260 TIGR00362 TIGR00362 437 1.9e-10 32.6 0.0 1 1 3.3e-12 2.8e-10 32.1 0.0 140 240 104 202 94 210 0.89 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_53 - 141 NUMOD1 PF07453.8 37 1.9e-05 17.1 0.1 1 1 1.2e-06 9.9e-05 14.8 0.0 18 37 5 24 4 24 0.94 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_79 - 388 AAA_29 PF13555.1 62 7e-06 18.2 0.1 1 1 2e-07 1.7e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_53 - 141 HTH_Tnp_IS630 PF01710.11 120 3.5e-05 16.1 0.0 1 1 7.7e-07 6.4e-05 15.3 0.0 20 62 5 49 2 53 0.84 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_58 - 260 AAA_28 PF13521.1 163 0.00021 13.9 0.0 1 1 5e-06 0.00041 13.0 0.0 1 49 103 156 103 171 0.73 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_29 - 83 HTH_3 PF01381.17 55 1.5e-09 30.2 0.1 1 1 1.2e-10 2.6e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_15 - 89 HTH_3 PF01381.17 55 9.2e-07 21.4 0.0 1 1 5.6e-08 1.2e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_36 - 86 HTH_3 PF01381.17 55 2.1e-05 17.0 0.1 1 1 1.5e-06 3e-05 16.5 0.1 2 32 21 51 21 56 0.89 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_20 - 160 HTH_3 PF01381.17 55 7.6e-05 15.2 0.2 1 2 0.0029 0.06 5.9 0.0 2 20 15 33 14 37 0.91 # 8746 # 9225 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_20 - 160 HTH_3 PF01381.17 55 7.6e-05 15.2 0.2 2 2 0.0013 0.027 7.0 0.0 1 23 96 118 96 120 0.89 # 8746 # 9225 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_51 - 202 HTH_23 PF13384.1 50 1e-07 24.2 0.2 1 1 6.1e-09 1e-07 24.2 0.2 10 42 166 198 160 201 0.92 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_36 - 86 HTH_23 PF13384.1 50 2.5e-06 19.7 0.2 1 1 2.6e-07 4.3e-06 19.0 0.2 12 38 23 49 19 56 0.84 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_15 - 89 HTH_23 PF13384.1 50 5.8e-06 18.6 0.0 1 1 5.3e-07 8.8e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_29 - 83 HTH_23 PF13384.1 50 3.7e-05 16.0 0.0 1 1 4.4e-06 7.3e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_53 - 141 HTH_23 PF13384.1 50 9e-05 14.8 0.0 1 1 1.3e-05 0.00022 13.6 0.0 18 38 4 24 1 26 0.87 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_51 - 202 HTH_7 PF02796.10 45 1.3e-05 17.7 0.0 1 1 8.7e-07 3.6e-05 16.3 0.0 13 38 165 190 156 190 0.93 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_53 - 141 HTH_7 PF02796.10 45 0.00029 13.4 0.2 1 1 2.1e-05 0.00089 11.8 0.0 23 43 5 25 4 27 0.89 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_29 - 83 HTH_19 PF12844.2 64 3.3e-08 26.2 0.0 1 1 1.7e-09 4.8e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_36 - 86 HTH_19 PF12844.2 64 7e-06 18.7 0.0 1 1 3.5e-07 9.7e-06 18.3 0.0 5 35 21 51 21 60 0.91 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_15 - 89 HTH_19 PF12844.2 64 7e-05 15.5 0.0 1 1 3.4e-06 9.4e-05 15.1 0.0 4 39 33 69 30 73 0.85 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_51 - 202 HTH_29 PF13551.1 112 3.5e-05 16.6 0.5 1 2 0.0071 0.59 3.0 0.0 51 88 43 87 25 101 0.62 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_51 - 202 HTH_29 PF13551.1 112 3.5e-05 16.6 0.5 2 2 1.9e-05 0.0016 11.3 0.2 4 36 166 197 165 200 0.89 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 260 PhoH PF02562.11 205 2.6e-07 22.7 0.1 1 1 5e-09 4.1e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_5 PF07728.9 139 1.5e-05 17.4 0.0 1 1 4.6e-07 3.8e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_50 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 1 3 1.7e-05 0.0014 9.8 0.0 16 36 134 154 125 158 0.88 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_50 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 2 3 9.3e-05 0.0077 7.4 0.1 93 140 235 281 229 303 0.80 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_50 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 3 3 0.083 6.9 -2.3 0.0 293 323 482 512 405 546 0.58 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_66 - 1017 AAA_18 PF13238.1 129 4.1e-05 16.5 0.1 1 1 4.2e-06 0.00035 13.6 0.0 2 19 492 509 492 562 0.79 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_40 - 248 IMS_HHH PF11798.3 32 0.00022 13.9 0.1 1 1 9e-06 0.00074 12.3 0.1 14 32 7 25 5 25 0.95 # 20366 # 21109 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_56 - 440 DDE_Tnp_1_6 PF13751.1 125 3.3e-19 61.8 0.2 1 1 4e-21 3.3e-19 61.8 0.2 52 125 364 437 356 437 0.92 # 36038 # 37357 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 1_58 - 260 DUF258 PF03193.11 161 0.00018 13.4 0.0 1 1 3.7e-06 0.0003 12.6 0.0 26 59 92 125 80 153 0.82 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_53 - 141 DUF3853 PF12964.2 96 0.00016 14.2 0.1 1 1 3.3e-06 0.00027 13.4 0.1 48 90 6 50 3 55 0.86 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_79 - 388 DUF87 PF01935.12 229 7.8e-05 15.2 0.0 1 1 1.8e-06 0.00015 14.2 0.0 28 45 157 174 155 188 0.89 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_51 - 202 HTH_28 PF13518.1 52 2.1e-08 26.7 0.4 1 1 2.4e-09 5.1e-08 25.5 0.4 4 38 165 199 165 201 0.92 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_53 - 141 HTH_28 PF13518.1 52 3.2e-05 16.6 0.0 1 1 9.1e-06 0.00019 14.1 0.0 13 34 4 25 2 29 0.91 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_15 - 89 HTH_28 PF13518.1 52 5.2e-05 15.9 0.0 1 1 3.5e-06 7.2e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_29 - 83 HTH_28 PF13518.1 52 0.00035 13.3 0.1 1 1 3.6e-05 0.00076 12.2 0.1 8 29 8 31 6 35 0.78 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_51 - 202 HTH_24 PF13412.1 48 2e-05 16.6 0.0 1 1 5.2e-07 4.3e-05 15.6 0.0 16 40 172 196 168 196 0.89 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 260 Sigma54_activ_2 PF14532.1 138 0.00033 13.4 0.0 1 1 6.3e-06 0.00052 12.7 0.0 9 64 87 144 84 229 0.70 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_51 - 202 HTH_10 PF04967.7 53 0.00036 12.8 0.0 1 1 1.3e-05 0.0011 11.3 0.0 27 46 177 196 173 199 0.86 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_79 - 388 Miro PF08477.8 119 0.00078 12.6 0.0 1 1 2.1e-05 0.0018 11.5 0.0 4 28 157 186 156 220 0.72 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 83 HTH_31 PF13560.1 64 1.6e-09 30.6 0.9 1 1 1.2e-10 2e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 14142 # 14390 # -1 # ID=1_29;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_20 - 160 HTH_31 PF13560.1 64 1.2e-07 24.5 1.6 1 2 0.0061 0.1 5.6 0.1 6 33 14 41 12 47 0.88 # 8746 # 9225 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_20 - 160 HTH_31 PF13560.1 64 1.2e-07 24.5 1.6 2 2 7.5e-07 1.2e-05 18.1 0.3 4 39 94 129 91 135 0.88 # 8746 # 9225 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_36 - 86 HTH_31 PF13560.1 64 2.6e-07 23.5 0.7 1 1 1.6e-08 2.6e-07 23.5 0.7 7 36 21 50 6 58 0.90 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_15 - 89 HTH_31 PF13560.1 64 1.7e-06 20.9 0.0 1 1 1.4e-07 2.3e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_51 - 202 HTH_31 PF13560.1 64 0.002 11.0 4.3 1 1 0.00025 0.0041 10.0 0.5 11 39 170 198 142 201 0.90 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_66 - 1017 DUF2075 PF09848.4 352 0.00031 12.4 0.0 1 1 1e-05 0.00087 10.9 0.0 5 22 492 509 489 526 0.84 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_79 - 388 T2SE PF00437.15 272 1.8e-23 75.4 0.0 1 1 3.4e-25 2.8e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_24 - 325 StbA PF06406.6 318 5.2e-157 514.3 0.2 1 1 7e-159 5.8e-157 514.1 0.2 1 318 1 322 1 322 0.99 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_58 - 260 NACHT PF05729.7 166 0.00011 14.6 0.0 1 1 4.1e-06 0.00017 13.9 0.0 3 49 104 151 102 200 0.81 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 NACHT PF05729.7 166 0.00028 13.2 0.0 1 1 1.3e-05 0.00055 12.3 0.0 4 29 156 181 154 188 0.83 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 1017 AAA_17 PF13207.1 121 3.8e-05 17.2 0.0 1 1 5.8e-06 0.00024 14.6 0.0 3 28 492 523 492 587 0.67 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 260 AAA_17 PF13207.1 121 0.00032 14.2 0.0 1 1 1.3e-05 0.00054 13.4 0.0 2 26 104 131 103 216 0.74 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_25 PF13481.1 194 6e-07 21.7 0.1 1 1 4.4e-08 1.8e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_79 - 388 AAA_25 PF13481.1 194 4.7e-06 18.8 0.0 1 1 2.3e-07 9.4e-06 17.8 0.0 25 53 144 172 122 178 0.89 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 147 RepA_N PF06970.6 76 0.0007 12.1 0.0 1 1 1.7e-05 0.0014 11.1 0.0 15 44 56 85 54 90 0.92 # 3281 # 3721 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_58 - 260 AAA_14 PF13173.1 128 2.9e-07 23.1 0.0 1 2 1.7e-08 1.4e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_14 PF13173.1 128 2.9e-07 23.1 0.0 2 2 0.048 4 0.0 0.0 14 46 215 247 212 257 0.80 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_24 - 325 Hydant_A_N PF05378.8 176 0.00083 11.5 3.9 1 4 0.08 6.6 -1.2 0.0 1 19 2 20 2 48 0.82 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 325 Hydant_A_N PF05378.8 176 0.00083 11.5 3.9 2 4 0.049 4.1 -0.5 0.0 108 154 38 86 15 103 0.67 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 325 Hydant_A_N PF05378.8 176 0.00083 11.5 3.9 3 4 0.057 4.7 -0.7 0.0 95 129 113 147 89 153 0.76 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 325 Hydant_A_N PF05378.8 176 0.00083 11.5 3.9 4 4 3.6e-05 0.003 9.7 0.2 2 51 170 217 169 226 0.82 # 10861 # 11835 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_51 - 202 HTH_Tnp_ISL3 PF13542.1 52 3.4e-05 15.7 0.2 1 1 2e-06 8.3e-05 14.4 0.2 29 51 175 197 166 198 0.85 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_15 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.0003 12.6 0.0 1 1 1e-05 0.00041 12.2 0.0 19 49 35 64 33 65 0.91 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_51 - 202 CENP-B_N PF04218.8 53 0.00013 14.0 0.0 1 1 7.9e-06 0.00033 12.8 0.0 21 45 172 196 165 199 0.87 # 29395 # 30000 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_15 - 89 CENP-B_N PF04218.8 53 0.0012 11.0 0.0 1 1 3.8e-05 0.0016 10.6 0.0 24 49 44 69 34 72 0.88 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_79 - 388 Ribosomal_S5 PF00333.15 67 2.6e-05 16.6 0.1 1 2 0.00093 0.077 5.5 0.0 26 45 84 103 77 114 0.83 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 Ribosomal_S5 PF00333.15 67 2.6e-05 16.6 0.1 2 2 0.00012 0.0097 8.4 0.0 21 54 242 274 230 278 0.91 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 388 RNA_helicase PF00910.17 107 0.00091 12.1 0.0 1 1 2.5e-05 0.0021 10.9 0.0 3 26 157 180 156 197 0.81 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 NTPase_1 PF03266.10 168 0.00019 13.8 0.1 1 2 0.0015 0.13 4.6 0.1 2 30 104 132 103 143 0.82 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 NTPase_1 PF03266.10 168 0.00019 13.8 0.1 2 2 0.0003 0.025 6.9 0.0 87 108 155 176 141 202 0.77 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_36 - 86 Mor PF08765.6 108 0.00031 13.2 0.0 1 1 4.7e-06 0.00039 12.9 0.0 71 92 27 48 18 57 0.85 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_15 - 89 Phage_CII PF05269.6 91 0.0006 12.5 0.0 1 1 9.2e-06 0.00076 12.2 0.0 17 45 36 64 32 81 0.83 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_79 - 388 ATP_bind_1 PF03029.12 238 0.00068 11.8 0.0 1 1 1.3e-05 0.0011 11.2 0.0 1 25 157 181 157 191 0.84 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_75 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00022 13.9 0.0 1 1 2.8e-06 0.00023 13.8 0.0 29 64 18 52 5 58 0.83 # 57645 # 57842 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_36 - 86 HTH_26 PF13443.1 63 6.7e-05 15.7 0.0 1 1 2.7e-06 0.00011 15.0 0.0 4 34 22 52 21 56 0.90 # 18827 # 19084 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_15 - 89 HTH_26 PF13443.1 63 0.00022 14.1 0.0 1 1 7.2e-06 0.0003 13.7 0.0 11 47 43 78 33 82 0.90 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_53 - 141 HTH_17 PF12728.2 51 4.5e-11 35.6 0.0 1 1 9.7e-13 8.1e-11 34.7 0.0 3 43 5 49 4 54 0.85 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_15 - 89 HTH_Crp_2 PF13545.1 76 0.00038 12.9 0.0 1 1 6.6e-06 0.00055 12.4 0.0 26 50 40 64 32 65 0.88 # 6660 # 6926 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_66 - 1017 AAA_10 PF12846.2 304 6e-42 136.7 0.0 1 1 6e-43 1.2e-41 135.7 0.0 5 297 492 884 489 889 0.94 # 48683 # 51733 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_50 - 696 AAA_10 PF12846.2 304 5.2e-10 31.8 0.0 1 1 3.7e-11 7.8e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 26725 # 28812 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_79 - 388 AAA_10 PF12846.2 304 1e-06 21.0 0.0 1 1 2.8e-07 5.8e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 260 AAA_10 PF12846.2 304 3.1e-05 16.1 0.2 1 2 0.058 1.2 1.1 0.0 106 155 28 69 4 89 0.61 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 AAA_10 PF12846.2 304 3.1e-05 16.1 0.2 2 2 1.8e-05 0.00036 12.6 0.1 3 35 103 135 101 172 0.84 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_58 - 260 IstB_IS21 PF01695.12 178 7.1e-66 213.6 0.0 1 1 2.2e-67 1.8e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 38875 # 39654 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 145 SSB PF00436.20 104 6.1e-32 102.3 0.2 1 1 8.4e-34 7e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 2071 # 2505 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_53 - 141 Phage_AlpA PF05930.7 51 0.00013 14.3 0.0 1 1 2.8e-06 0.00023 13.6 0.0 4 28 4 28 1 30 0.90 # 33542 # 33964 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.407 1_79 - 388 GTP_EFTU PF00009.22 188 0.0009 11.3 0.0 1 1 2e-05 0.0016 10.5 0.0 8 34 157 183 155 195 0.87 # 61676 # 62839 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/5f1c7c12-752a-46d7-88d1-512a0240b6f4 # Target file: checkm_output/bins/pm1801/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1801/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5f1c7c12-752a-46d7-88d1-512a0240b6f4 checkm_output/bins/pm1801/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:33 2017 # [ok]