# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 93 Sigma70_r4 PF04545.11 50 5.8e-07 18.2 0.0 1 1 1.5e-07 1.2e-06 17.2 0.0 16 42 52 83 50 84 0.85 # 2839 # 3117 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.427 1_2 - 72 TIGR00962 TIGR00962 503 0.00013 9.7 1.8 1 1 1.6e-05 0.00013 9.7 1.8 418 481 4 67 1 71 0.89 # 689 # 904 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_2 - 72 KorB PF08535.5 93 3.2e-05 13.5 0.7 1 1 4.6e-06 3.6e-05 13.3 0.7 36 92 14 68 6 69 0.88 # 689 # 904 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_8 - 101 HTH_37 PF13744.1 80 3.4e-05 13.0 0.0 1 1 7.2e-06 5.8e-05 12.3 0.0 23 74 45 97 37 98 0.89 # 4722 # 5024 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 101 P22_Cro PF14549.1 60 6e-08 21.8 0.1 1 1 1e-08 8.4e-08 21.3 0.1 12 41 56 87 54 92 0.90 # 4722 # 5024 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 101 HTH_3 PF01381.17 55 8.1e-11 31.1 0.0 1 1 1.4e-11 1.2e-10 30.6 0.0 1 45 45 89 45 91 0.96 # 4722 # 5024 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 101 HTH_19 PF12844.2 64 2.8e-09 26.4 0.0 1 1 9.6e-10 3.9e-09 25.9 0.0 4 48 45 88 43 99 0.83 # 4722 # 5024 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_4 - 89 HTH_19 PF12844.2 64 4.5e-05 12.9 0.0 1 1 1.6e-05 6.3e-05 12.4 0.0 27 60 9 43 2 47 0.88 # 1399 # 1665 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_2 - 72 Ribosomal_S13 PF00416.17 107 4.5e-05 13.3 1.9 1 1 6.9e-06 5.5e-05 13.0 1.9 26 81 12 67 3 69 0.90 # 689 # 904 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_8 - 101 HTH_31 PF13560.1 64 4.3e-08 22.7 0.0 1 1 7.9e-09 6.3e-08 22.2 0.0 6 46 45 84 43 93 0.90 # 4722 # 5024 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_5 - 93 HTH_Tnp_ISL3 PF13542.1 52 6.8e-05 11.4 0.0 1 1 1.4e-05 0.00011 10.7 0.0 18 49 52 83 51 85 0.90 # 2839 # 3117 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.427 1_5 - 93 MarR_2 PF12802.2 62 2.1e-05 13.6 0.0 1 1 4.1e-06 3.3e-05 13.0 0.0 7 43 50 83 43 84 0.85 # 2839 # 3117 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.427 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a0c1863b-bb3a-4f1e-820c-bd9e9046bf37 # Target file: checkm_output/bins/pm1797/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1797/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a0c1863b-bb3a-4f1e-820c-bd9e9046bf37 checkm_output/bins/pm1797/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:19 2017 # [ok]