# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 430 Zn_Tnp_IS1 PF03811.8 36 0.00088 9.0 13.0 1 3 0.0057 0.08 2.7 0.3 8 15 101 108 99 110 0.87 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_4 - 430 Zn_Tnp_IS1 PF03811.8 36 0.00088 9.0 13.0 2 3 0.00096 0.013 5.2 0.1 3 12 222 231 221 234 0.88 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_4 - 430 Zn_Tnp_IS1 PF03811.8 36 0.00088 9.0 13.0 3 3 0.00013 0.0018 8.0 0.1 5 17 298 310 296 319 0.76 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_10 - 156 DUF134 PF02001.11 106 4.4e-05 13.5 0.4 1 2 3.7e-05 0.00051 10.1 0.0 45 77 8 40 3 52 0.87 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 DUF134 PF02001.11 106 4.4e-05 13.5 0.4 2 2 0.014 0.19 1.8 0.2 39 92 87 140 52 155 0.61 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_12 - 596 DUF927 PF06048.6 286 6.1e-40 127.3 0.0 1 1 6.5e-41 9.2e-40 126.7 0.0 8 283 41 321 35 324 0.86 # 9410 # 11197 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.607 1_10 - 156 HTH_38 PF13936.1 44 0.00028 10.7 0.1 1 1 2e-05 0.00028 10.7 0.1 6 40 5 40 1 42 0.85 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 Sigma70_r4_2 PF08281.7 54 2.2e-06 17.3 0.0 1 1 3.9e-07 5.5e-06 16.0 0.0 13 47 7 41 6 43 0.92 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_Tnp_1 PF01527.15 76 3.7e-10 29.9 2.4 1 1 2.8e-11 4e-10 29.8 0.6 5 73 2 75 1 78 0.74 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 DUF1804 PF08822.6 165 8.5e-05 12.5 3.2 1 1 7.6e-06 0.00011 12.1 3.2 3 114 4 116 1 135 0.69 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 MerR_1 PF13411.1 69 3.2e-05 13.9 0.0 1 1 6.8e-06 9.6e-05 12.3 0.0 3 29 23 49 21 60 0.85 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_23 PF13384.1 50 4.7e-12 35.5 0.3 1 2 1.5e-12 2.1e-11 33.4 0.1 3 40 5 43 3 52 0.89 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_23 PF13384.1 50 4.7e-12 35.5 0.3 2 2 0.087 1.2 -0.8 0.0 7 26 60 65 54 88 0.52 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_29 PF13551.1 112 3.7e-07 20.5 1.7 1 2 3.9e-07 5.5e-06 16.7 0.1 1 33 9 41 9 47 0.93 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_29 PF13551.1 112 3.7e-07 20.5 1.7 2 2 0.0064 0.09 3.1 0.3 15 48 59 92 49 146 0.68 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_28 PF13518.1 52 6.9e-09 25.8 0.1 1 2 4.9e-09 6.9e-08 22.6 0.0 1 32 8 40 8 43 0.93 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 HTH_28 PF13518.1 52 6.9e-09 25.8 0.1 2 2 0.034 0.48 0.8 0.0 11 34 55 78 52 92 0.80 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_4 - 430 DZR PF12773.2 50 1.1e-06 18.6 7.9 1 3 3e-05 0.00043 10.3 1.2 15 49 70 125 58 126 0.85 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_4 - 430 DZR PF12773.2 50 1.1e-06 18.6 7.9 2 3 0.0065 0.091 2.9 0.0 14 36 203 231 195 241 0.80 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_4 - 430 DZR PF12773.2 50 1.1e-06 18.6 7.9 3 3 0.00026 0.0036 7.3 0.2 12 41 271 310 264 314 0.78 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_10 - 156 HTH_Tnp_ISL3 PF13542.1 52 9.4e-07 18.2 0.1 1 1 1.6e-07 2.2e-06 17.0 0.1 13 47 5 40 3 43 0.90 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 MerR PF00376.18 38 1.3e-05 14.9 0.0 1 1 3e-06 4.3e-05 13.3 0.0 3 22 24 43 22 44 0.87 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 CENP-B_N PF04218.8 53 1.3e-06 18.0 0.0 1 1 1.9e-07 2.6e-06 17.0 0.0 8 47 5 45 3 47 0.90 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_4 - 430 DUF2387 PF09526.5 71 0.00017 11.7 5.1 1 2 1.9e-05 0.00027 11.1 0.1 11 55 101 143 99 149 0.80 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_4 - 430 DUF2387 PF09526.5 71 0.00017 11.7 5.1 2 2 0.035 0.49 0.6 0.0 9 16 299 306 291 336 0.79 # 2864 # 4153 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.659 1_10 - 156 Put_DNA-bind_N PF06971.8 50 7e-05 12.8 0.0 1 2 0.00021 0.0029 7.6 0.0 23 47 18 39 11 40 0.82 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 Put_DNA-bind_N PF06971.8 50 7e-05 12.8 0.0 2 2 0.0083 0.12 2.5 0.0 4 12 69 77 66 82 0.88 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 1_10 - 156 NAD_binding_3 PF03447.11 117 7.1e-05 13.4 0.3 1 1 9.8e-06 0.00014 12.5 0.2 11 87 14 88 10 114 0.83 # 7955 # 8422 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.620 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a47a8a3c-12b1-470c-b9bb-bf3f1cc05ec0 # Target file: checkm_output/bins/pm179/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm179/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a47a8a3c-12b1-470c-b9bb-bf3f1cc05ec0 checkm_output/bins/pm179/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:52:06 2017 # [ok]