# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 148 HTH_DeoR PF08220.7 57 1.8e-07 17.1 0.0 1 1 4.4e-07 4.4e-07 15.9 0.0 20 47 80 107 76 108 0.94 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_38 PF13936.1 44 1.1e-06 14.7 0.0 1 1 2.4e-06 2.4e-06 13.6 0.0 24 41 78 95 76 96 0.87 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 MarR PF01047.17 59 1.1e-08 21.2 0.0 1 1 2.6e-08 2.6e-08 20.1 0.0 19 49 76 106 62 109 0.93 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_Tnp_4 PF13613.1 53 3.2e-06 13.2 0.0 1 1 5.5e-06 5.5e-06 12.4 0.0 22 44 77 99 76 101 0.91 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_32 PF13565.1 77 7.1e-06 13.3 0.2 1 1 0.0002 0.0002 8.7 0.2 33 77 37 95 7 95 0.64 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 GntR PF00392.16 64 6.2e-08 18.6 0.0 1 1 1.1e-07 1.1e-07 17.8 0.0 27 58 77 108 68 113 0.89 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_3 PF01381.17 55 2.3e-08 20.3 0.1 1 1 7.8e-08 7.8e-08 18.6 0.0 12 31 77 96 76 102 0.91 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_23 PF13384.1 50 1.3e-07 17.7 0.0 1 1 2.8e-07 2.8e-07 16.6 0.0 24 39 81 96 80 104 0.89 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_7 PF02796.10 45 2.6e-07 17.0 0.0 1 2 0.00042 0.00042 6.7 0.0 6 26 35 55 23 56 0.88 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_7 PF02796.10 45 2.6e-07 17.0 0.0 2 2 0.00019 0.00019 7.8 0.0 27 43 80 96 78 97 0.87 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 RepL PF05732.6 165 2.3e-07 16.5 0.0 1 1 3e-07 3e-07 16.2 0.0 54 129 52 132 2 139 0.77 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_19 PF12844.2 64 3.1e-06 13.7 0.4 1 1 1.6e-05 1.6e-05 11.4 0.0 18 34 80 96 76 99 0.94 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_28 PF13518.1 52 1.8e-08 20.8 0.0 1 1 3.9e-08 3.9e-08 19.8 0.0 18 44 80 104 74 112 0.79 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_36 PF13730.1 55 2.5e-10 26.9 0.3 1 1 5.7e-10 5.7e-10 25.8 0.0 6 53 54 102 52 104 0.92 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_Tnp_ISL3 PF13542.1 52 5.5e-06 12.1 0.0 1 2 0.0067 0.0067 2.2 0.0 1 14 21 34 21 35 0.85 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_Tnp_ISL3 PF13542.1 52 5.5e-06 12.1 0.0 2 2 0.00026 0.00026 6.7 0.0 32 49 79 96 69 98 0.87 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 MerR PF00376.18 38 6.3e-06 12.2 0.0 1 1 2.5e-05 2.5e-05 10.3 0.0 5 19 80 94 77 108 0.94 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_17 PF12728.2 51 2.5e-07 17.5 0.0 1 1 6.1e-07 6.1e-07 16.2 0.0 7 23 80 96 77 113 0.79 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_11 PF08279.7 55 2.4e-09 23.3 0.1 1 1 6.8e-09 6.8e-09 21.8 0.0 19 44 78 105 76 112 0.84 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_5 PF01022.15 47 8.2e-06 12.0 0.0 1 2 0.086 0.086 -0.9 0.0 13 28 4 19 1 25 0.73 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_5 PF01022.15 47 8.2e-06 12.0 0.0 2 2 4.2e-05 4.2e-05 9.7 0.0 21 40 80 99 80 102 0.91 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 TrmB PF01978.14 68 1.9e-06 14.1 0.0 1 1 4.4e-06 4.4e-06 12.9 0.0 28 57 80 109 74 121 0.83 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_1 - 148 HTH_Crp_2 PF13545.1 76 4.1e-08 19.5 0.0 1 1 7.7e-08 7.7e-08 18.6 0.0 29 58 75 104 57 108 0.85 # 1091 # 1534 # 1 # ID=1_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fe39e316-2764-4955-ae5f-2a0c15b6986f # Target file: checkm_output/bins/pm1789/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1789/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fe39e316-2764-4955-ae5f-2a0c15b6986f checkm_output/bins/pm1789/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:57 2017 # [ok]