# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 186 HTH_IclR PF09339.5 52 2e-06 17.7 0.2 1 1 9.2e-07 7.3e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 459 HTH_IclR PF09339.5 52 1.8e-05 14.7 0.1 1 1 6.4e-06 5.1e-05 13.2 0.1 11 39 413 441 412 443 0.92 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 3_2 - 186 HTH_22 PF13309.1 64 3.2e-05 14.0 1.2 1 1 1.1e-05 0.00017 11.7 0.1 30 63 151 179 143 180 0.76 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_2 - 186 HTH_40 PF14493.1 91 0.0001 12.9 0.5 1 1 2.1e-05 0.00034 11.2 0.1 7 32 152 177 147 183 0.89 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_2 - 186 HTH_38 PF13936.1 44 8.7e-07 18.8 0.1 1 1 1.1e-07 8.7e-07 18.8 0.1 9 41 147 179 141 182 0.93 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 459 HTH_38 PF13936.1 44 6.7e-06 16.0 0.4 1 1 2.4e-06 1.9e-05 14.5 0.4 15 35 415 435 405 442 0.84 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 1_5 - 213 MobB PF03205.9 140 1.4e-05 15.1 0.0 1 1 2.1e-06 3.4e-05 13.9 0.0 10 113 12 96 3 108 0.77 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_19 PF13245.1 76 3.6e-05 13.9 0.7 1 1 1.5e-05 0.00024 11.2 0.0 20 51 12 41 4 57 0.78 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 CbiA PF01656.18 195 1.5e-32 102.9 0.3 1 1 2.2e-33 3.5e-32 101.7 0.3 1 174 4 157 4 176 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 KTI12 PF08433.5 270 0.00013 11.5 0.0 1 1 1.3e-05 0.0002 10.9 0.0 12 45 13 46 6 84 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_2 - 459 Sigma70_r4_2 PF08281.7 54 2.7e-06 17.2 0.1 1 1 3.7e-07 5.8e-06 16.1 0.1 12 47 407 441 402 443 0.90 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 4_1 - 246 rve PF00665.21 120 5.9e-14 42.6 0.1 1 2 0.015 0.24 1.9 0.0 78 102 38 60 15 65 0.83 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 4_1 - 246 rve PF00665.21 120 5.9e-14 42.6 0.1 2 2 6.8e-14 1.1e-12 38.5 0.0 9 119 86 193 81 194 0.89 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_5 - 213 YhjQ PF06564.7 244 2.5e-07 20.6 1.1 1 3 7.3e-08 1.2e-06 18.4 0.1 1 41 1 41 1 45 0.94 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 YhjQ PF06564.7 244 2.5e-07 20.6 1.1 2 3 0.075 1.2 -1.3 0.0 112 149 70 107 63 110 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 YhjQ PF06564.7 244 2.5e-07 20.6 1.1 3 3 0.059 0.95 -1.0 0.0 219 233 188 202 182 205 0.86 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_24 PF13479.1 213 4.7e-06 16.6 0.0 1 1 5.9e-07 9.5e-06 15.6 0.0 11 89 10 96 2 100 0.64 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 4_1 - 246 HTH_Tnp_1 PF01527.15 76 4.4e-05 13.8 0.3 1 1 5.8e-06 9.3e-05 12.7 0.3 4 51 17 69 15 74 0.79 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_2 - 459 GerE PF00196.14 58 2e-06 17.4 0.2 1 1 3.1e-07 5e-06 16.2 0.2 5 33 407 435 404 437 0.94 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 1_5 - 213 MipZ PF09140.6 261 1.2e-14 44.3 1.4 1 3 8e-11 1.3e-09 27.8 0.1 2 40 3 41 2 54 0.90 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 MipZ PF09140.6 261 1.2e-14 44.3 1.4 2 3 1.1e-05 0.00017 11.0 0.1 96 135 73 112 60 148 0.81 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 MipZ PF09140.6 261 1.2e-14 44.3 1.4 3 3 0.0024 0.038 3.3 0.0 212 254 168 208 158 211 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_16 PF13191.1 185 1e-05 15.9 0.1 1 1 8e-06 0.00013 12.3 0.1 34 70 12 49 10 211 0.88 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 adh_short_C2 PF13561.1 241 4.6e-05 13.5 0.0 1 1 4.4e-06 7.1e-05 12.9 0.0 2 64 12 75 11 133 0.85 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 3_2 - 186 HTH_Tnp_IS630 PF01710.11 120 1.5e-05 15.0 0.0 1 1 1.9e-06 3.1e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 213 SRP54 PF00448.17 196 1.3e-05 15.0 0.2 1 1 1.4e-06 2.3e-05 14.2 0.2 10 39 11 40 2 89 0.88 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 4_1 - 246 HTH_32 PF13565.1 77 1.2e-07 22.9 0.1 1 1 3e-08 4.9e-07 20.9 0.0 24 76 14 61 4 62 0.83 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_2 - 459 HTH_3 PF01381.17 55 8.6e-06 16.0 0.1 1 2 0.035 0.56 0.5 0.0 4 19 92 109 89 111 0.87 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 1_2 - 459 HTH_3 PF01381.17 55 8.6e-06 16.0 0.1 2 2 6.8e-06 0.00011 12.4 0.1 4 30 415 441 413 446 0.91 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 1_2 - 459 HTH_23 PF13384.1 50 1.7e-07 21.1 0.8 1 1 1.6e-07 8.6e-07 18.9 0.2 6 38 409 441 404 443 0.89 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 4_1 - 246 HTH_23 PF13384.1 50 1.1e-06 18.6 0.7 1 2 0.05 0.27 1.5 0.0 7 27 22 46 18 47 0.69 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 4_1 - 246 HTH_23 PF13384.1 50 1.1e-06 18.6 0.7 2 2 5.9e-06 3.2e-05 14.0 0.1 28 42 52 66 51 73 0.87 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 3_2 - 186 HTH_23 PF13384.1 50 5.7e-06 16.3 2.1 1 1 1.2e-06 6.2e-06 16.2 0.2 5 39 146 180 142 184 0.87 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 213 Fer4_NifH PF00142.13 273 3.4e-06 16.7 0.0 1 2 9.1e-06 0.00015 11.3 0.0 6 39 8 41 2 49 0.88 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 Fer4_NifH PF00142.13 273 3.4e-06 16.7 0.0 2 2 0.0022 0.036 3.5 0.0 149 246 105 205 88 211 0.64 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 3_2 - 186 HTH_7 PF02796.10 45 2.5e-13 40.1 0.3 1 1 9.7e-14 7.8e-13 38.5 0.1 1 44 141 181 141 182 0.94 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 459 HTH_7 PF02796.10 45 4.5e-05 13.7 0.2 1 1 1.5e-05 0.00012 12.3 0.2 10 36 409 435 401 442 0.89 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 3_2 - 186 HTH_29 PF13551.1 112 1.5e-05 15.4 0.4 1 2 0.029 0.46 1.1 0.1 24 55 114 144 89 150 0.69 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_2 - 186 HTH_29 PF13551.1 112 1.5e-05 15.4 0.4 2 2 1e-05 0.00016 12.2 0.0 4 35 151 181 148 184 0.90 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_4 - 258 DDE_Tnp_IS66 PF03050.9 271 2.7e-49 158.0 0.0 1 1 4.4e-50 3.5e-49 157.7 0.0 114 271 19 195 13 195 0.95 # 3009 # 3782 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.570 4_1 - 246 DDE_Tnp_IS66 PF03050.9 271 4.2e-13 39.3 0.3 1 1 6.8e-14 5.4e-13 39.0 0.3 5 132 21 155 17 185 0.87 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_5 - 213 TIGR01968 TIGR01968 261 6.2e-08 22.2 1.3 1 2 2.1e-08 3.3e-07 19.8 0.1 2 39 2 39 1 43 0.96 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 TIGR01968 TIGR01968 261 6.2e-08 22.2 1.3 2 2 0.0093 0.15 1.3 0.1 112 147 76 111 61 157 0.72 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 4_1 - 246 HTH_28 PF13518.1 52 9.9e-06 15.9 1.1 1 1 7.8e-06 4.2e-05 13.9 1.1 22 36 51 65 24 66 0.76 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_2 - 459 HTH_28 PF13518.1 52 1.6e-05 15.2 0.2 1 1 1.2e-05 6.5e-05 13.3 0.2 3 32 411 440 409 443 0.86 # 1180 # 2556 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.655 3_2 - 186 HTH_28 PF13518.1 52 2.1e-05 14.9 0.0 1 1 1.3e-05 6.8e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 213 LpxK PF02606.9 326 2.2e-05 13.8 0.1 1 1 2.3e-06 3.7e-05 13.0 0.1 37 96 3 60 1 103 0.76 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 Methyltransf_24 PF13578.1 106 4.1e-05 14.8 0.1 1 1 1.1e-05 0.00017 12.8 0.1 8 84 14 90 11 105 0.74 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_17 PF13207.1 121 1.7e-07 22.4 0.0 1 1 2e-08 3.2e-07 21.5 0.0 9 78 12 89 11 144 0.63 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_25 PF13481.1 194 0.00017 11.3 2.7 1 1 0.00013 0.0021 7.8 1.4 41 154 10 87 2 104 0.54 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 VirC1 PF07015.6 231 2.8e-07 20.1 0.0 1 1 2.8e-08 4.4e-07 19.4 0.0 1 144 1 136 1 209 0.70 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_7 - 335 Transposase_20 PF02371.11 87 1.6e-25 79.4 0.2 1 1 2.3e-26 3.7e-25 78.3 0.2 2 78 210 286 209 296 0.94 # 4626 # 5630 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_5 - 213 APS_kinase PF01583.15 157 3.6e-05 13.8 0.0 1 1 4.4e-06 7e-05 12.9 0.0 10 39 10 39 2 52 0.90 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 4_1 - 246 DDE_Tnp_IS240 PF13610.1 140 1.4e-53 171.0 0.0 1 1 1.2e-54 1.9e-53 170.5 0.0 4 139 86 223 84 224 0.99 # 3 # 740 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 3_2 - 186 TrmB PF01978.14 68 8.9e-06 15.8 0.0 1 1 1.1e-06 1.7e-05 14.8 0.0 19 44 155 180 149 181 0.89 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 213 SKI PF01202.17 158 4e-05 13.8 0.1 1 1 4.7e-06 7.5e-05 13.0 0.1 2 22 12 32 11 38 0.91 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_10 PF12846.2 304 7.4e-05 12.5 0.0 1 1 7.5e-06 0.00012 11.8 0.0 11 47 12 50 10 83 0.91 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 3_2 - 186 HTH_20 PF12840.2 61 6.7e-07 19.5 0.1 1 2 0.0081 0.13 2.5 0.0 33 52 8 27 6 28 0.90 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_2 - 186 HTH_20 PF12840.2 61 6.7e-07 19.5 0.1 2 2 9.2e-06 0.00015 12.0 0.1 3 43 110 177 108 180 0.91 # 456 # 1013 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 213 ArsA_ATPase PF02374.10 305 5.2e-08 22.5 0.0 1 2 1.5e-08 2.4e-07 20.3 0.0 6 45 7 46 1 60 0.89 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 ArsA_ATPase PF02374.10 305 5.2e-08 22.5 0.0 2 2 0.032 0.51 -0.5 0.0 126 141 75 90 66 98 0.81 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_31 PF13614.1 157 5.4e-12 36.2 0.1 1 2 1.8e-10 2.8e-09 27.4 0.0 2 41 3 42 2 46 0.93 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_5 - 213 AAA_31 PF13614.1 157 5.4e-12 36.2 0.1 2 2 0.00039 0.0063 6.8 0.0 117 154 75 111 65 114 0.79 # 3385 # 4023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/102a24f5-504a-4df7-929b-228d4858457c # Target file: checkm_output/bins/pm1788/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1788/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/102a24f5-504a-4df7-929b-228d4858457c checkm_output/bins/pm1788/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:57 2017 # [ok]