#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
1_3                  -            247 Phage_CI_repr        PF07022.8     66   2.9e-05   12.2   0.0   1   2     0.048      0.14    0.3   0.0    15    45     4    34     1    41 0.83 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 Phage_CI_repr        PF07022.8     66   2.9e-05   12.2   0.0   2   2    0.0001   0.00031    8.9   0.0    11    31   109   128    95   183 0.80 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 RepL                 PF05732.6    165   2.4e-08   21.3   3.8   1   1     8e-09   2.4e-08   21.3   3.8    43   137    76   168    65   207 0.78 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_19               PF12844.2     64   1.7e-06   16.0   5.8   1   3   0.00026   0.00078    7.6   0.1    29    57     3    31     2    38 0.91 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_19               PF12844.2     64   1.7e-06   16.0   5.8   2   3    0.0011    0.0034    5.5   0.1    42    59    74    91    47    93 0.80 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_19               PF12844.2     64   1.7e-06   16.0   5.8   3   3    0.0041     0.012    3.7   0.1    12    32   109   129   106   146 0.90 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_36               PF13730.1     55   2.5e-07   18.8   0.1   1   1   2.6e-07   7.8e-07   17.3   0.1     2    52    84   136    83   139 0.77 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_26               PF13443.1     63   1.7e-05   13.1   1.4   1   2     0.055      0.16    0.3   0.1     1    16    75    90    45    95 0.59 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_26               PF13443.1     63   1.7e-05   13.1   1.4   2   2   8.8e-05   0.00026    9.2   1.0    11    32   106   131    75   138 0.83 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
1_3                  -            247 HTH_Crp_2            PF13545.1     76   7.4e-06   13.8   0.0   1   1     5e-06   1.5e-05   12.8   0.0    21    68   102   150    89   156 0.81 # 2014 # 2754 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255
#
# Program:         hmmsearch
# Version:         3.1b1 (May 2013)
# Pipeline mode:   SEARCH
# Query file:      /tmp/8269f9df-8818-4f85-8064-185ddba8f0b6
# Target file:     checkm_output/bins/pm1784/genes.faa
# Option settings: hmmsearch --domtblout checkm_output/bins/pm1784/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8269f9df-8818-4f85-8064-185ddba8f0b6 checkm_output/bins/pm1784/genes.faa 
# Current dir:     /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887
# Date:            Thu Nov 30 09:51:52 2017
# [ok]