# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 137 HTH_IclR PF09339.5 52 9.1e-06 14.0 0.3 1 1 4.2e-06 2.1e-05 12.8 0.3 20 40 5 25 2 26 0.91 # 748 # 1158 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_4 - 107 Sigma70_r4_2 PF08281.7 54 2.2e-05 12.6 0.0 1 1 9.7e-06 4.8e-05 11.6 0.0 20 48 34 62 32 62 0.92 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_4 - 107 Sigma70_r4 PF04545.11 50 6.4e-06 14.2 0.0 1 1 2.1e-06 1e-05 13.6 0.0 15 42 35 62 30 64 0.91 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_4 - 107 HTH_37 PF13744.1 80 1.1e-26 81.3 0.1 1 1 2.7e-27 1.3e-26 81.0 0.1 7 79 13 88 9 89 0.94 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_2 - 137 MerR_1 PF13411.1 69 2.1e-05 13.0 0.1 1 1 1.4e-05 7.2e-05 11.3 0.0 2 35 5 38 4 50 0.82 # 748 # 1158 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_4 - 107 HTH_1 PF00126.22 60 2.4e-05 12.8 0.0 1 1 7.1e-06 3.6e-05 12.3 0.0 14 33 40 60 29 66 0.83 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_4 - 107 HTH_3 PF01381.17 55 1.2e-07 20.3 0.0 1 1 3.4e-08 1.7e-07 19.8 0.0 4 45 35 77 32 83 0.84 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_4 - 107 HTH_23 PF13384.1 50 6.6e-07 17.7 0.0 1 1 3.7e-07 9.2e-07 17.2 0.0 9 38 31 61 23 68 0.87 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_2 - 137 HTH_23 PF13384.1 50 1.4e-05 13.5 0.0 1 1 1.5e-05 3.7e-05 12.1 0.0 18 40 4 26 1 28 0.92 # 748 # 1158 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_4 - 107 HTH_19 PF12844.2 64 1.6e-05 13.7 0.0 1 1 8.8e-06 2.2e-05 13.2 0.0 5 46 33 75 31 85 0.88 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_3 - 89 HTH_19 PF12844.2 64 2.9e-05 12.8 0.0 1 1 1.7e-05 4.1e-05 12.4 0.0 27 59 9 42 2 47 0.88 # 1216 # 1482 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_4 - 107 HTH_28 PF13518.1 52 2.1e-05 13.3 0.0 1 1 6.2e-06 3.1e-05 12.7 0.0 5 33 31 61 29 63 0.78 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_4 - 107 HTH_31 PF13560.1 64 8.3e-06 14.7 0.0 1 1 2.2e-06 1.1e-05 14.3 0.0 11 39 37 65 31 79 0.85 # 2658 # 2978 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_2 - 137 MerR PF00376.18 38 1.3e-05 13.5 0.0 1 1 4.6e-06 2.3e-05 12.7 0.0 1 25 5 29 5 34 0.92 # 748 # 1158 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_2 - 137 HTH_17 PF12728.2 51 2.7e-08 22.8 0.1 1 1 1.2e-08 6e-08 21.7 0.0 3 32 5 35 4 50 0.77 # 748 # 1158 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0b937aa9-275b-4e77-8e41-9f83f4f74c4d # Target file: checkm_output/bins/pm1782/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1782/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0b937aa9-275b-4e77-8e41-9f83f4f74c4d checkm_output/bins/pm1782/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:50 2017 # [ok]