# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_82 - 421 DnaB_bind PF10410.4 59 8.2e-05 15.4 0.0 1 1 2.2e-06 0.0002 14.2 0.0 5 54 363 413 359 418 0.90 # 75862 # 77124 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.359 1_9 - 318 KaiC PF06745.8 227 4.3e-05 15.5 0.1 1 1 8.5e-07 7.7e-05 14.6 0.1 22 69 118 163 114 283 0.79 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_8 - 436 Peptidase_M56 PF05569.6 299 0.00094 10.9 0.1 1 1 1e-05 0.00094 10.9 0.1 100 178 4 80 1 94 0.74 # 9658 # 10965 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_12 - 515 ABC_tran PF00005.22 137 0.00077 12.6 0.3 1 2 0.076 6.9 -0.3 0.1 79 124 173 240 96 248 0.56 # 13541 # 15085 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.434 1_12 - 515 ABC_tran PF00005.22 137 0.00077 12.6 0.3 2 2 5.9e-05 0.0054 9.8 0.0 18 42 250 274 241 294 0.81 # 13541 # 15085 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.434 1_67 - 420 HHH_5 PF14520.1 60 1.2e-05 18.2 0.1 1 2 1.7e-06 0.00016 14.7 0.0 8 37 181 210 172 229 0.84 # 62155 # 63414 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.463 1_67 - 420 HHH_5 PF14520.1 60 1.2e-05 18.2 0.1 2 2 0.062 5.7 0.1 0.0 30 51 317 340 308 347 0.81 # 62155 # 63414 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.463 1_91 - 713 N6_Mtase PF02384.11 311 9.5e-07 20.9 0.0 1 1 2e-08 1.8e-06 19.9 0.0 123 239 281 390 265 413 0.81 # 84753 # 86891 # 1 # ID=1_91;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_80 - 454 FtsK_SpoIIIE PF01580.13 205 2.1e-06 20.1 0.0 1 2 1.6e-06 7.4e-05 15.0 0.0 26 65 19 60 11 75 0.84 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_80 - 454 FtsK_SpoIIIE PF01580.13 205 2.1e-06 20.1 0.0 2 2 0.0085 0.39 2.9 0.0 145 204 300 387 199 388 0.67 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_81 - 711 FtsK_SpoIIIE PF01580.13 205 0.00015 14.0 0.0 1 1 6.3e-06 0.00029 13.1 0.0 17 63 119 165 107 166 0.78 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_1 - 1674 Helicase_C PF00271.26 78 3.1e-07 23.0 0.1 1 1 1e-08 9.4e-07 21.5 0.1 10 78 737 807 729 807 0.86 # 3 # 5024 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.465 1_80 - 454 MobB PF03205.9 140 0.00039 12.9 0.1 1 2 0.00011 0.0049 9.4 0.0 3 49 36 79 35 89 0.89 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_80 - 454 MobB PF03205.9 140 0.00039 12.9 0.1 2 2 0.059 2.7 0.5 0.1 49 90 232 272 225 277 0.68 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_89 - 355 MobB PF03205.9 140 0.00061 12.3 0.0 1 1 2.7e-05 0.0012 11.3 0.0 10 44 88 120 78 123 0.85 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 318 AAA_19 PF13245.1 76 4e-05 16.2 0.7 1 1 1.3e-06 0.00012 14.6 0.7 10 37 115 142 107 224 0.78 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_89 - 355 CbiA PF01656.18 195 1.7e-31 101.9 0.0 1 1 5.3e-33 2.4e-31 101.4 0.0 1 178 80 293 80 319 0.75 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_20 - 256 CbiA PF01656.18 195 2.8e-08 26.1 0.4 1 1 8.9e-10 4e-08 25.6 0.4 2 142 12 154 11 209 0.68 # 23571 # 24338 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_57 - 464 TIGR00392 TIGR00392 861 3.2e-10 31.2 0.0 1 1 5.6e-12 5.1e-10 30.5 0.0 607 664 264 321 242 327 0.86 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 464 TIGR00398 TIGR00398 530 1.3e-18 59.4 1.7 1 2 2.1e-11 1.9e-09 29.2 0.0 12 85 34 107 27 170 0.85 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 464 TIGR00398 TIGR00398 530 1.3e-18 59.4 1.7 2 2 1.8e-11 1.6e-09 29.4 0.4 315 374 256 314 244 319 0.83 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_90 - 467 Sigma70_r4_2 PF08281.7 54 0.00012 14.4 0.0 1 1 2.6e-06 0.00024 13.4 0.0 20 47 147 174 147 176 0.92 # 83290 # 84690 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_59 - 122 zf-ribbon_3 PF13248.1 26 4.9e-06 18.5 2.3 1 1 5.4e-08 4.9e-06 18.5 2.3 5 22 36 54 34 57 0.94 # 58196 # 58561 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_89 - 355 YhjQ PF06564.7 244 3e-08 26.1 0.0 1 3 2.6e-07 2.4e-05 16.5 0.0 3 42 79 118 77 129 0.87 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 YhjQ PF06564.7 244 3e-08 26.1 0.0 2 3 0.033 3 -0.1 0.0 102 132 191 220 175 240 0.74 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 YhjQ PF06564.7 244 3e-08 26.1 0.0 3 3 0.00056 0.051 5.6 0.0 178 239 284 346 252 352 0.82 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_73 - 389 AAA_23 PF13476.1 202 1.3e-06 21.6 0.6 1 1 5.5e-08 2.5e-06 20.7 0.6 15 44 147 178 137 374 0.86 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_9 - 318 AAA_23 PF13476.1 202 0.00013 15.1 2.2 1 1 1.4e-05 0.00063 12.9 0.0 15 36 109 132 92 136 0.77 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_89 - 355 AAA_24 PF13479.1 213 0.00058 12.2 0.0 1 1 1.7e-05 0.0015 10.9 0.0 12 81 87 217 84 226 0.83 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_91 - 713 Methyltransf_26 PF13659.1 117 3e-13 42.6 0.0 1 1 7.1e-15 6.4e-13 41.6 0.0 1 116 224 334 224 335 0.87 # 84753 # 86891 # 1 # ID=1_91;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_20 - 256 Zeta_toxin PF06414.7 201 4.7e-05 15.3 0.0 1 1 1.6e-06 7.2e-05 14.7 0.0 15 100 8 98 2 110 0.78 # 23571 # 24338 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_73 - 389 Zeta_toxin PF06414.7 201 0.00043 12.2 0.1 1 2 0.00035 0.016 7.0 0.0 18 34 155 171 142 182 0.84 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_73 - 389 Zeta_toxin PF06414.7 201 0.00043 12.2 0.1 2 2 0.014 0.65 1.8 0.0 68 118 324 379 318 388 0.75 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_12 - 515 AAA_30 PF13604.1 196 2e-05 17.0 0.0 1 1 3.8e-07 3.4e-05 16.2 0.0 2 48 227 273 226 288 0.89 # 13541 # 15085 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.434 1_81 - 711 TraG-D_C PF12696.2 128 1.5e-05 17.6 0.1 1 1 2.9e-07 2.7e-05 16.8 0.1 5 99 458 552 454 578 0.71 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_89 - 355 MipZ PF09140.6 261 6.2e-10 31.3 0.0 1 2 2.1e-07 1.9e-05 16.6 0.0 2 49 79 126 78 134 0.89 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 MipZ PF09140.6 261 6.2e-10 31.3 0.0 2 2 3.7e-06 0.00034 12.5 0.0 76 127 181 233 154 236 0.78 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 318 AAA PF00004.24 132 0.00013 15.0 0.2 1 1 5.9e-06 0.00027 13.9 0.2 2 21 119 138 118 264 0.73 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_20 - 256 AAA PF00004.24 132 0.00024 14.1 0.1 1 1 2.1e-05 0.00094 12.2 0.1 1 39 12 57 12 221 0.75 # 23571 # 24338 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_90 - 467 KorB PF08535.5 93 1.1e-18 60.0 0.0 1 1 4.9e-20 2.2e-18 59.0 0.0 2 90 152 241 151 244 0.90 # 83290 # 84690 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_70 - 644 KorB PF08535.5 93 0.00011 15.2 0.0 1 1 2.1e-05 0.00093 12.2 0.0 2 75 146 217 145 242 0.84 # 64576 # 66507 # -1 # ID=1_70;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_86 - 669 zf-C4_Topoisom PF01396.14 39 2.9e-13 41.9 6.1 1 1 6.6e-15 6e-13 40.9 6.1 3 38 620 655 618 656 0.95 # 79380 # 81386 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_57 - 464 tRNA-synt_1g PF09334.6 391 3.1e-18 58.3 1.2 1 2 1.7e-10 1.5e-08 26.4 0.1 13 84 35 106 29 148 0.89 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 464 tRNA-synt_1g PF09334.6 391 3.1e-18 58.3 1.2 2 2 7.7e-12 7e-10 30.8 0.2 312 373 253 313 233 321 0.85 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_91 - 713 Eco57I PF07669.6 106 7.2e-09 28.8 0.2 1 1 4.1e-10 3.7e-08 26.5 0.0 3 102 284 383 282 386 0.79 # 84753 # 86891 # 1 # ID=1_91;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_57 - 464 tRNA-synt_1 PF00133.17 601 4.2e-09 27.6 0.1 1 2 0.012 1.1 -0.1 0.0 38 66 36 64 26 69 0.91 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 464 tRNA-synt_1 PF00133.17 601 4.2e-09 27.6 0.1 2 2 2.5e-10 2.3e-08 25.2 0.0 513 596 221 302 208 307 0.82 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_9 - 318 AAA_16 PF13191.1 185 2.2e-05 17.3 0.1 1 1 1.1e-06 3.4e-05 16.7 0.1 22 55 113 148 103 264 0.70 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_12 - 515 AAA_16 PF13191.1 185 7.6e-05 15.5 0.0 1 1 7.3e-06 0.00022 14.0 0.0 14 56 233 277 223 295 0.80 # 13541 # 15085 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.434 1_80 - 454 AAA_16 PF13191.1 185 0.00067 12.4 0.1 1 1 0.00016 0.0049 9.6 0.0 26 51 35 60 26 86 0.84 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_80 - 454 AAA_22 PF13401.1 131 8.3e-06 18.8 0.1 1 2 1.3e-05 0.00039 13.4 0.0 5 32 34 61 30 137 0.82 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_80 - 454 AAA_22 PF13401.1 131 8.3e-06 18.8 0.1 2 2 0.041 1.2 2.0 0.0 88 122 340 382 322 386 0.61 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_9 - 318 AAA_22 PF13401.1 131 0.0005 13.0 0.7 1 1 3.2e-05 0.00099 12.1 0.4 5 28 116 139 111 210 0.85 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_73 - 389 AAA_22 PF13401.1 131 0.00094 12.1 0.3 1 1 7.7e-05 0.0023 10.8 0.3 4 23 153 172 148 270 0.89 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_89 - 355 Thymidylate_kin PF02223.12 186 0.0004 12.5 0.0 1 1 1.2e-05 0.0011 11.1 0.0 6 36 88 119 87 127 0.89 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_73 - 389 AAA_29 PF13555.1 62 0.00059 12.2 0.0 1 1 1.6e-05 0.0015 10.9 0.0 20 43 151 173 143 187 0.79 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_89 - 355 SRP54 PF00448.17 196 3.7e-06 19.3 0.2 1 2 6.3e-06 0.00057 12.1 0.0 11 38 88 115 80 118 0.94 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 SRP54 PF00448.17 196 3.7e-06 19.3 0.2 2 2 0.0019 0.17 4.0 0.0 54 91 176 212 160 218 0.75 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 97 HTH_3 PF01381.17 55 4.7e-09 28.8 0.0 1 1 2.4e-10 7.4e-09 28.2 0.0 1 45 37 81 37 83 0.95 # 38084 # 38374 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_61 - 122 HTH_3 PF01381.17 55 3.5e-06 19.6 0.1 1 1 3e-07 9.2e-06 18.3 0.0 1 53 65 116 65 118 0.91 # 59029 # 59394 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.399 1_39 - 84 HTH_3 PF01381.17 55 2.7e-05 16.8 0.0 1 1 1.3e-06 4.1e-05 16.2 0.0 1 25 6 30 6 48 0.84 # 38442 # 38693 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_39 - 84 HTH_23 PF13384.1 50 0.00056 12.4 0.3 1 1 2.1e-05 0.0019 10.7 0.2 12 33 7 30 6 47 0.83 # 38442 # 38693 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_89 - 355 Fer4_NifH PF00142.13 273 9.9e-06 17.6 0.3 1 2 1e-05 0.00094 11.1 0.0 8 43 86 121 78 127 0.90 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 Fer4_NifH PF00142.13 273 9.9e-06 17.6 0.3 2 2 0.0012 0.11 4.4 0.0 174 247 261 344 192 349 0.67 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 97 HTH_19 PF12844.2 64 5.9e-08 25.5 0.0 1 1 2.4e-09 1.1e-07 24.6 0.0 4 48 37 81 37 82 0.96 # 38084 # 38374 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_61 - 122 HTH_19 PF12844.2 64 1.4e-06 21.1 0.0 1 1 7.7e-08 3.5e-06 19.8 0.0 3 57 64 117 62 120 0.93 # 59029 # 59394 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.399 1_1 - 1674 ResIII PF04851.10 184 1.8e-06 20.7 0.0 1 1 1.3e-07 1.2e-05 18.0 0.0 4 111 217 301 214 406 0.67 # 3 # 5024 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.465 1_1 - 1674 SNF2_N PF00176.18 299 4.3e-13 41.4 0.0 1 1 1.3e-14 1.2e-12 40.0 0.0 30 203 235 491 217 543 0.80 # 3 # 5024 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.465 1_29 - 627 PAPS_reduct PF01507.14 174 2.6e-09 29.9 0.0 1 1 1.2e-10 1.1e-08 27.8 0.0 3 150 64 248 62 252 0.72 # 29641 # 31521 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_80 - 454 TrwB_AAD_bind PF10412.4 386 8.9e-10 30.4 0.1 1 2 4e-07 1.2e-05 16.8 0.0 13 54 31 73 23 75 0.88 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_80 - 454 TrwB_AAD_bind PF10412.4 386 8.9e-10 30.4 0.1 2 2 2.4e-05 0.00074 10.9 0.1 137 288 246 392 210 407 0.66 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_81 - 711 TrwB_AAD_bind PF10412.4 386 1.3e-09 29.9 0.2 1 2 9.8e-06 0.0003 12.2 0.0 13 55 138 180 126 277 0.85 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_81 - 711 TrwB_AAD_bind PF10412.4 386 1.3e-09 29.9 0.2 2 2 1.8e-06 5.4e-05 14.7 0.1 259 377 468 588 442 593 0.82 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_89 - 355 TrwB_AAD_bind PF10412.4 386 0.00021 12.7 0.0 1 1 1.5e-05 0.00044 11.7 0.0 25 65 88 130 77 139 0.83 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 TIGR01968 TIGR01968 261 8.3e-15 47.2 0.7 1 2 3.4e-11 3.1e-09 29.0 0.2 2 39 78 115 77 119 0.96 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 TIGR01968 TIGR01968 261 8.3e-15 47.2 0.7 2 2 2.2e-07 2e-05 16.5 0.0 99 237 192 343 161 352 0.71 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_20 - 256 AAA_18 PF13238.1 129 9.8e-05 15.5 0.1 1 1 7e-06 0.00021 14.4 0.1 1 86 12 105 12 129 0.66 # 23571 # 24338 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_89 - 355 AAA_18 PF13238.1 129 0.00012 15.1 0.0 1 2 8e-05 0.0024 11.0 0.0 8 42 88 127 87 147 0.77 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 AAA_18 PF13238.1 129 0.00012 15.1 0.0 2 2 0.093 2.8 1.0 0.1 57 82 188 214 164 271 0.72 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 318 AAA_18 PF13238.1 129 0.0011 12.1 0.7 1 1 0.0001 0.0032 10.6 0.7 2 21 119 138 119 162 0.78 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_67 - 420 IMS_HHH PF11798.3 32 4.1e-08 25.8 0.0 1 1 1.4e-09 1.2e-07 24.3 0.0 6 32 173 199 168 199 0.86 # 62155 # 63414 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.463 1_78 - 165 DUF3853 PF12964.2 96 0.00046 12.8 0.1 1 2 0.00011 0.01 8.5 0.0 46 67 87 108 81 129 0.83 # 70969 # 71463 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_78 - 165 DUF3853 PF12964.2 96 0.00046 12.8 0.1 2 2 0.009 0.82 2.4 0.0 14 37 129 152 121 162 0.74 # 70969 # 71463 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_82 - 421 zf-CHC2 PF01807.15 98 5.2e-23 73.3 0.0 1 1 1.2e-24 1.1e-22 72.2 0.0 5 96 7 99 3 101 0.91 # 75862 # 77124 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.359 1_80 - 454 DUF87 PF01935.12 229 5.6e-10 32.1 2.3 1 1 4.4e-10 1.3e-08 27.6 2.3 10 68 20 78 15 330 0.68 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_81 - 711 DUF87 PF01935.12 229 0.0003 13.4 1.3 1 2 0.00076 0.023 7.2 0.1 19 39 136 156 133 165 0.86 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_81 - 711 DUF87 PF01935.12 229 0.0003 13.4 1.3 2 2 0.013 0.38 3.2 0.1 86 172 626 704 600 709 0.75 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_89 - 355 DUF87 PF01935.12 229 0.00079 12.0 1.2 1 1 7.7e-05 0.0023 10.5 0.0 33 61 88 115 86 117 0.86 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_57 - 464 tRNA-synt_1e PF01406.14 301 3e-143 469.1 0.2 1 1 4.1e-145 3.7e-143 468.8 0.2 2 300 15 315 14 316 0.98 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 97 HTH_24 PF13412.1 48 0.00071 11.8 0.0 1 2 0.00049 0.044 6.0 0.0 12 34 40 62 37 64 0.84 # 38084 # 38374 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 97 HTH_24 PF13412.1 48 0.00071 11.8 0.0 2 2 0.0026 0.24 3.7 0.0 6 18 77 89 73 91 0.89 # 38084 # 38374 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_89 - 355 AAA_26 PF13500.1 199 3.4e-05 16.3 0.2 1 1 9.4e-06 0.00086 11.7 0.2 3 116 80 221 78 298 0.64 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 LpxK PF02606.9 326 0.00014 13.7 0.0 1 2 6.8e-06 0.00062 11.5 0.0 35 71 77 112 59 135 0.88 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 LpxK PF02606.9 326 0.00014 13.7 0.0 2 2 0.037 3.3 -0.8 0.0 142 161 200 219 197 221 0.89 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 97 HTH_31 PF13560.1 64 8.7e-10 31.5 0.2 1 1 4.3e-11 2e-09 30.4 0.2 7 51 38 81 16 85 0.84 # 38084 # 38374 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_39 - 84 HTH_31 PF13560.1 64 2.3e-08 27.0 1.6 1 1 7.9e-10 3.6e-08 26.3 1.6 6 42 6 41 2 80 0.82 # 38442 # 38693 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_12 - 515 T2SE PF00437.15 272 1.2e-41 135.1 0.2 1 1 5.8e-43 1.7e-41 134.6 0.2 6 259 110 380 105 392 0.82 # 13541 # 15085 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.434 1_73 - 389 T2SE PF00437.15 272 1.4e-29 95.5 0.0 1 1 1.3e-30 3.9e-29 94.1 0.0 11 261 29 293 21 304 0.84 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_9 - 318 T2SE PF00437.15 272 4.6e-21 67.6 0.0 1 1 2.1e-22 6.4e-21 67.2 0.0 80 261 71 251 45 261 0.80 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_89 - 355 AAA_17 PF13207.1 121 2.9e-05 17.7 0.0 1 1 1.2e-06 0.00011 15.8 0.0 9 60 88 135 87 229 0.76 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_59 - 122 DZR PF12773.2 50 1.3e-06 21.0 19.3 1 2 8.7e-07 7.9e-05 15.3 6.9 15 49 21 54 4 55 0.87 # 58196 # 58561 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_59 - 122 DZR PF12773.2 50 1.3e-06 21.0 19.3 2 2 1.5e-07 1.3e-05 17.7 4.5 1 38 21 57 21 64 0.56 # 58196 # 58561 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_73 - 389 AAA_25 PF13481.1 194 0.0003 13.0 0.0 1 1 5.8e-06 0.00053 12.2 0.0 28 53 148 173 126 192 0.83 # 68057 # 69223 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.397 1_9 - 318 AAA_14 PF13173.1 128 0.00044 12.9 0.0 1 1 2.2e-05 0.001 11.8 0.0 4 84 117 212 114 228 0.71 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_80 - 454 AAA_14 PF13173.1 128 0.00052 12.7 0.1 1 2 0.00047 0.022 7.5 0.0 5 32 36 65 32 88 0.80 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_80 - 454 AAA_14 PF13173.1 128 0.00052 12.7 0.1 2 2 0.034 1.5 1.5 0.0 99 126 289 316 211 318 0.71 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_89 - 355 VirC1 PF07015.6 231 0.00065 11.6 0.0 1 2 0.0001 0.0091 7.8 0.0 2 41 78 117 77 128 0.81 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 VirC1 PF07015.6 231 0.00065 11.6 0.0 2 2 0.0084 0.77 1.5 0.0 82 118 203 239 175 283 0.81 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_81 - 711 T4SS-DNA_transf PF02534.9 469 5.7e-07 21.1 0.1 1 3 3.7e-05 0.0034 8.7 0.0 37 82 132 180 106 186 0.87 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_81 - 711 T4SS-DNA_transf PF02534.9 469 5.7e-07 21.1 0.1 2 3 0.039 3.5 -1.3 0.0 101 168 227 289 226 304 0.68 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_81 - 711 T4SS-DNA_transf PF02534.9 469 5.7e-07 21.1 0.1 3 3 3.1e-05 0.0028 9.0 0.0 329 385 478 534 469 564 0.90 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_57 - 464 TIGR00422 TIGR00422 863 4.8e-10 30.4 0.1 1 2 7.3e-05 0.0066 6.8 0.0 48 76 36 64 11 71 0.92 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 464 TIGR00422 TIGR00422 863 4.8e-10 30.4 0.1 2 2 2.5e-09 2.3e-07 21.5 0.0 522 583 264 324 245 335 0.89 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_89 - 355 ATP_bind_1 PF03029.12 238 0.00045 12.6 0.0 1 1 1.2e-05 0.0011 11.3 0.0 6 35 88 117 86 128 0.92 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_68 - 140 RNA_pol_A_bac PF01000.21 112 0.00089 12.2 0.0 1 1 1.2e-05 0.0011 11.9 0.0 50 91 49 94 25 102 0.81 # 63424 # 63843 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_90 - 467 MarR_2 PF12802.2 62 0.00035 13.0 0.0 1 1 1.6e-05 0.0015 11.0 0.0 11 46 145 178 140 179 0.93 # 83290 # 84690 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_90 - 467 HTH_5 PF01022.15 47 0.001 11.6 0.0 1 1 2.2e-05 0.002 10.6 0.0 16 40 154 178 148 179 0.94 # 83290 # 84690 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_17 - 854 HTH_Crp_2 PF13545.1 76 0.00054 12.6 0.0 1 1 2.1e-05 0.0019 10.8 0.0 29 63 199 233 192 237 0.94 # 19824 # 22385 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_57 - 464 tRNA-synt_1f PF01921.13 360 4.9e-10 31.3 0.1 1 2 0.00021 0.019 6.3 0.0 29 72 28 71 10 93 0.87 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 464 tRNA-synt_1f PF01921.13 360 4.9e-10 31.3 0.1 2 2 1.8e-09 1.7e-07 23.0 0.0 275 319 261 305 167 333 0.78 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_53 - 1021 AAA_10 PF12846.2 304 5.5e-33 107.4 0.0 1 1 3.8e-34 8.6e-33 106.7 0.0 5 303 494 898 490 899 0.91 # 47944 # 51006 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_80 - 454 AAA_10 PF12846.2 304 4.1e-23 75.0 0.1 1 1 3.5e-24 7.9e-23 74.0 0.1 1 297 33 415 33 422 0.77 # 72354 # 73715 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_81 - 711 AAA_10 PF12846.2 304 4.7e-15 48.5 0.0 1 1 3.4e-16 7.8e-15 47.8 0.0 3 295 142 528 140 533 0.80 # 73737 # 75869 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_9 - 318 AAA_10 PF12846.2 304 0.00014 14.2 0.2 1 2 8.4e-05 0.0019 10.4 0.1 3 28 117 142 115 184 0.78 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 318 AAA_10 PF12846.2 304 0.00014 14.2 0.2 2 2 0.044 1 1.4 0.0 186 229 195 239 182 257 0.82 # 10962 # 11915 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_57 - 464 TIGR00435 TIGR00435 466 1.1e-198 653.4 0.0 1 1 1.3e-200 1.2e-198 653.2 0.0 1 465 2 462 2 463 0.98 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 1_89 - 355 ArsA_ATPase PF02374.10 305 1.9e-13 42.8 0.1 1 3 1.6e-12 1.5e-10 33.4 0.0 7 51 84 128 77 141 0.86 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 ArsA_ATPase PF02374.10 305 1.9e-13 42.8 0.1 2 3 0.00078 0.071 4.8 0.0 120 137 196 215 165 229 0.78 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 ArsA_ATPase PF02374.10 305 1.9e-13 42.8 0.1 3 3 0.012 1.1 1.0 0.0 228 280 254 302 243 320 0.80 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_89 - 355 AAA_31 PF13614.1 157 1.2e-14 47.3 0.1 1 1 1e-15 9.5e-14 44.4 0.0 1 147 78 233 78 242 0.81 # 82233 # 83297 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_67 - 420 DNA_pol_lambd_f PF10391.4 52 8.1e-06 18.2 0.0 1 1 2.4e-07 2.2e-05 16.8 0.0 6 29 182 205 180 211 0.87 # 62155 # 63414 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.463 1_57 - 464 DALR_2 PF09190.6 63 9.4e-29 92.3 1.1 1 1 2.5e-30 2.3e-28 91.1 0.2 1 63 343 404 343 404 0.99 # 56340 # 57731 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.469 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/01ba9931-81ae-4662-be8a-b3c4677a81c2 # Target file: checkm_output/bins/pm1779/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1779/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/01ba9931-81ae-4662-be8a-b3c4677a81c2 checkm_output/bins/pm1779/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:47 2017 # [ok]