# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 356 ABC_tran PF00005.22 137 7.2e-05 15.6 0.0 1 1 3.8e-06 0.00014 14.6 0.0 6 38 173 205 169 237 0.83 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_47 - 521 ABC_tran PF00005.22 137 0.00014 14.7 0.0 1 1 1.2e-05 0.00046 13.0 0.0 17 37 264 284 249 349 0.85 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 226 FAD_binding_3 PF01494.14 356 0.00016 13.3 1.8 1 1 3.9e-06 0.00029 12.4 1.8 52 124 132 203 128 214 0.92 # 57264 # 57941 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.465 1_55 - 356 Sigma54_activat PF00158.21 168 6.6e-06 18.2 0.0 1 1 1.6e-07 1.2e-05 17.3 0.0 9 53 165 209 158 232 0.78 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_55 - 356 FtsK_SpoIIIE PF01580.13 205 2.6e-05 16.2 0.0 1 1 5.7e-07 4.3e-05 15.5 0.0 38 58 177 198 148 200 0.81 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_1 - 221 MobB PF03205.9 140 1.3e-05 17.5 2.1 1 2 5e-06 0.00037 12.7 0.3 10 37 13 40 5 45 0.88 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_1 - 221 MobB PF03205.9 140 1.3e-05 17.5 2.1 2 2 0.0021 0.16 4.2 0.1 32 75 76 119 69 133 0.74 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_25 - 316 HTH_8 PF02954.14 42 8.7e-05 14.6 0.0 1 1 1.9e-06 0.00014 13.9 0.0 19 35 23 39 20 46 0.88 # 21456 # 22403 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_44 - 313 AAA_19 PF13245.1 76 1.9e-05 16.9 0.2 1 1 1.8e-06 4.4e-05 15.7 0.2 11 35 116 140 109 222 0.76 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_55 - 356 AAA_19 PF13245.1 76 3.4e-05 16.1 0.1 1 1 4.7e-06 0.00012 14.4 0.1 12 36 179 227 171 283 0.62 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_1 - 221 AAA_19 PF13245.1 76 0.00041 12.6 0.1 1 1 5.3e-05 0.0013 11.0 0.0 20 47 13 36 12 55 0.84 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_1 - 221 CbiA PF01656.18 195 1.5e-14 46.3 2.5 1 1 1.5e-15 5.6e-14 44.5 2.5 2 171 6 159 5 181 0.71 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_32 - 234 CbiA PF01656.18 195 1.4e-10 33.4 0.7 1 3 0.00053 0.02 6.8 0.1 1 19 5 23 5 38 0.87 # 30773 # 31474 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.338 1_32 - 234 CbiA PF01656.18 195 1.4e-10 33.4 0.7 2 3 0.04 1.5 0.6 0.0 133 173 50 86 39 93 0.84 # 30773 # 31474 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.338 1_32 - 234 CbiA PF01656.18 195 1.4e-10 33.4 0.7 3 3 7.1e-09 2.7e-07 22.7 0.0 118 178 94 153 89 169 0.87 # 30773 # 31474 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.338 1_25 - 316 Fe_dep_repress PF01325.14 60 0.00083 11.8 0.2 1 1 2.1e-05 0.0016 11.0 0.2 26 48 26 48 18 49 0.87 # 21456 # 22403 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 221 YhjQ PF06564.7 244 0.00036 12.4 0.0 1 2 0.0027 0.2 3.4 0.0 10 42 11 45 5 50 0.82 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_1 - 221 YhjQ PF06564.7 244 0.00036 12.4 0.0 2 2 0.00024 0.018 6.8 0.0 101 151 65 113 50 121 0.88 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_55 - 356 AAA_23 PF13476.1 202 0.00074 12.4 5.8 1 2 0.098 7.4 -0.7 0.1 131 175 125 169 118 180 0.70 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_55 - 356 AAA_23 PF13476.1 202 0.00074 12.4 5.8 2 2 7.9e-06 0.00059 12.7 4.1 15 39 168 198 160 200 0.78 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_55 - 356 AAA_24 PF13479.1 213 0.00044 12.3 0.0 1 1 9.7e-06 0.00073 11.6 0.0 2 23 177 198 176 212 0.89 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_47 - 521 AAA_30 PF13604.1 196 0.00011 14.2 0.0 1 1 2.7e-06 0.00021 13.4 0.0 2 44 242 284 241 296 0.87 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_23 - 409 TIGR02432 TIGR02432 189 5.4e-07 21.9 0.0 1 1 1.1e-08 8.6e-07 21.2 0.0 2 42 32 72 31 100 0.84 # 18842 # 20068 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_53 - 540 TraG-D_C PF12696.2 128 3e-28 90.8 0.0 1 1 6.2e-30 4.7e-28 90.2 0.0 1 127 314 437 314 438 0.90 # 49272 # 50891 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_1 - 221 MipZ PF09140.6 261 4.4e-12 38.1 0.3 1 2 7.6e-08 5.7e-06 18.0 0.0 3 39 5 41 3 55 0.90 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_1 - 221 MipZ PF09140.6 261 4.4e-12 38.1 0.3 2 2 5.4e-08 4e-06 18.5 0.0 87 144 68 126 61 160 0.82 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_36 - 762 zf-C4_Topoisom PF01396.14 39 1.3e-13 42.8 13.4 1 2 2e-11 1.5e-09 29.8 3.1 6 37 625 656 623 657 0.94 # 33217 # 35502 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_36 - 762 zf-C4_Topoisom PF01396.14 39 1.3e-13 42.8 13.4 2 2 1.6e-07 1.2e-05 17.3 2.7 2 35 671 700 670 703 0.89 # 33217 # 35502 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_1 - 221 TIGR00064 TIGR00064 279 0.00095 10.6 1.3 1 1 2.9e-05 0.0022 9.4 1.3 89 116 13 40 4 41 0.90 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_47 - 521 AAA_16 PF13191.1 185 6.7e-05 15.4 0.0 1 1 8.3e-06 0.00031 13.2 0.0 18 63 252 298 245 369 0.72 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_44 - 313 AAA_16 PF13191.1 185 7.6e-05 15.2 0.4 1 1 3.4e-06 0.00013 14.5 0.4 20 47 111 138 104 230 0.73 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_55 - 356 AAA_22 PF13401.1 131 2.2e-05 17.1 0.0 1 1 1.8e-06 4.6e-05 16.1 0.0 3 44 177 212 175 239 0.82 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_44 - 313 AAA_22 PF13401.1 131 9.2e-05 15.1 0.2 1 1 6.6e-06 0.00016 14.3 0.2 5 35 116 143 111 262 0.75 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_47 - 521 AAA_22 PF13401.1 131 0.00033 13.3 0.0 1 1 3.7e-05 0.00093 11.9 0.0 5 30 259 284 255 324 0.81 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_55 - 356 AAA_29 PF13555.1 62 0.00012 14.1 0.0 1 1 6.9e-06 0.00026 13.1 0.0 23 46 177 201 167 208 0.77 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_44 - 313 AAA_29 PF13555.1 62 0.00066 11.7 0.3 1 1 0.00012 0.0044 9.1 0.4 23 40 116 132 107 137 0.81 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_25 - 316 HTH_1 PF00126.22 60 4.8e-19 60.5 0.1 1 1 1e-20 7.7e-19 59.8 0.1 2 60 11 69 10 69 0.96 # 21456 # 22403 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 221 SRP54 PF00448.17 196 3.3e-05 15.9 1.8 1 1 3e-06 0.00023 13.2 1.7 11 39 13 41 4 114 0.70 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_55 - 356 AAA_28 PF13521.1 163 0.0004 12.9 0.1 1 1 1.8e-05 0.0013 11.2 0.0 1 19 180 198 180 218 0.86 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_1 - 221 Fer4_NifH PF00142.13 273 8.2e-06 17.6 0.1 1 1 1.8e-07 1.3e-05 16.9 0.1 7 39 10 42 3 47 0.84 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_55 - 356 Mg_chelatase PF01078.16 207 0.00031 12.4 0.0 1 1 7.4e-06 0.00056 11.6 0.0 21 52 177 208 158 242 0.81 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_23 - 409 PAPS_reduct PF01507.14 174 5.1e-20 64.5 0.3 1 2 9.1e-11 6.9e-09 28.2 0.0 3 51 33 85 31 95 0.89 # 18842 # 20068 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_23 - 409 PAPS_reduct PF01507.14 174 5.1e-20 64.5 0.3 2 2 1.5e-12 1.1e-10 34.1 0.0 101 164 163 238 156 240 0.88 # 18842 # 20068 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_53 - 540 TrwB_AAD_bind PF10412.4 386 2.2e-16 51.9 0.0 1 1 5.2e-18 3.9e-16 51.0 0.0 244 374 314 445 264 459 0.88 # 49272 # 50891 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_1 - 221 TIGR01968 TIGR01968 261 1.7e-10 32.9 1.0 1 2 5.1e-09 3.8e-07 21.8 0.5 3 39 4 40 2 50 0.89 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_1 - 221 TIGR01968 TIGR01968 261 1.7e-10 32.9 1.0 2 2 2.4e-05 0.0018 9.8 0.0 101 151 69 119 65 195 0.76 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_55 - 356 AAA_18 PF13238.1 129 5.5e-05 16.0 0.0 1 1 1.5e-06 0.00011 15.0 0.0 1 27 181 224 181 247 0.68 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_55 - 356 Sigma54_activ_2 PF14532.1 138 0.00011 14.7 0.0 1 1 3e-06 0.00023 13.7 0.0 16 61 173 218 163 230 0.84 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_55 - 356 T2SE PF00437.15 272 1.3e-52 170.8 0.0 1 1 6.3e-54 1.6e-52 170.5 0.0 7 266 30 321 25 327 0.94 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_47 - 521 T2SE PF00437.15 272 4e-35 113.4 0.0 1 1 2.4e-36 5.9e-35 112.9 0.0 11 256 128 381 119 396 0.81 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_44 - 313 T2SE PF00437.15 272 7.6e-21 66.6 0.1 1 1 4.1e-22 1e-20 66.2 0.1 90 264 82 254 46 262 0.78 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_47 - 521 NACHT PF05729.7 166 0.00012 14.3 0.0 1 2 0.014 1 1.5 0.0 82 142 144 203 106 239 0.76 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_47 - 521 NACHT PF05729.7 166 0.00012 14.3 0.0 2 2 3.9e-05 0.0029 9.8 0.0 3 22 261 280 259 290 0.85 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_55 - 356 AAA_17 PF13207.1 121 6.6e-07 22.7 0.0 1 1 3.3e-08 1.2e-06 21.8 0.0 2 62 181 257 180 315 0.72 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_1 - 221 AAA_17 PF13207.1 121 0.00018 14.9 0.0 1 1 7.6e-06 0.00028 14.2 0.0 9 101 13 113 12 172 0.74 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_55 - 356 Pox_A32 PF04665.7 241 0.00045 12.0 0.0 1 1 9e-06 0.00068 11.4 0.0 11 34 176 199 168 231 0.85 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_44 - 313 RuvB_N PF05496.7 234 4.1e-05 15.2 0.0 1 2 0.0046 0.35 2.3 0.0 42 71 107 137 99 155 0.70 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_44 - 313 RuvB_N PF05496.7 234 4.1e-05 15.2 0.0 2 2 1.4e-05 0.0011 10.5 0.0 101 166 230 294 223 304 0.85 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_1 - 221 VirC1 PF07015.6 231 1.8e-09 29.4 0.1 1 1 5.9e-11 4.4e-09 28.2 0.1 4 54 5 55 2 58 0.91 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_62 - 226 GrpE PF01025.14 166 0.047 5.7 22.4 1 2 2.7e-05 0.002 10.1 2.9 9 109 35 136 30 148 0.66 # 57264 # 57941 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.465 1_62 - 226 GrpE PF01025.14 166 0.047 5.7 22.4 2 2 0.089 6.7 -1.3 12.7 12 69 151 217 140 219 0.67 # 57264 # 57941 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.465 1_14 - 321 PaaX PF07848.7 70 0.00053 12.5 0.0 1 1 1.8e-05 0.0013 11.2 0.0 36 68 49 82 16 84 0.71 # 9719 # 10681 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_53 - 540 T4SS-DNA_transf PF02534.9 469 7.3e-73 238.1 0.0 1 1 1.3e-74 9.5e-73 237.7 0.0 13 459 9 476 3 482 0.86 # 49272 # 50891 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_47 - 521 RNA_helicase PF00910.17 107 0.00051 12.7 0.0 1 2 0.00024 0.018 7.8 0.0 2 23 262 283 261 299 0.86 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_47 - 521 RNA_helicase PF00910.17 107 0.00051 12.7 0.0 2 2 0.016 1.2 1.9 0.0 38 88 456 504 445 510 0.73 # 42634 # 44196 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_23 - 409 ATP_bind_3 PF01171.15 182 1.2e-06 20.6 0.0 1 1 2.7e-08 2.1e-06 19.9 0.0 2 40 32 70 31 95 0.86 # 18842 # 20068 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_55 - 356 ATP_bind_1 PF03029.12 238 5.7e-05 15.2 0.1 1 1 2.1e-06 0.00016 13.7 0.0 1 26 183 208 183 223 0.89 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_36 - 762 Toprim_Crpt PF13342.1 62 3e-18 57.8 0.8 1 1 8.9e-20 6.7e-18 56.7 0.8 2 60 694 752 693 754 0.94 # 33217 # 35502 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_71 - 164 TIGR00922 TIGR00922 172 5.3e-08 25.1 0.0 1 1 5.2e-09 1.9e-07 23.2 0.0 55 117 52 114 3 123 0.81 # 64488 # 64979 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_70 - 152 TIGR00922 TIGR00922 172 2.1e-06 19.8 0.1 1 1 6.8e-08 2.6e-06 19.6 0.1 55 107 61 116 11 141 0.73 # 63976 # 64431 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_23 - 409 Asn_synthase PF00733.16 255 1.1e-05 17.5 0.0 1 1 2.4e-07 1.8e-05 16.8 0.0 16 58 28 70 12 153 0.85 # 18842 # 20068 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_64 - 831 AAA_10 PF12846.2 304 1.9e-16 52.8 0.0 1 1 1.2e-17 3.1e-16 52.1 0.0 3 302 427 715 425 717 0.80 # 59490 # 61982 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_44 - 313 AAA_10 PF12846.2 304 1.4e-05 17.1 0.0 1 2 4.8e-05 0.0012 10.8 0.0 3 26 117 140 115 157 0.85 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_44 - 313 AAA_10 PF12846.2 304 1.4e-05 17.1 0.0 2 2 0.0048 0.12 4.2 0.0 191 235 200 246 188 263 0.78 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_55 - 356 AAA_10 PF12846.2 304 0.00014 13.8 0.0 1 1 9.3e-06 0.00023 13.1 0.0 3 23 180 200 178 212 0.89 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_1 - 221 ArsA_ATPase PF02374.10 305 1.2e-06 20.3 1.4 1 1 2.8e-08 2.1e-06 19.4 1.3 3 38 5 40 3 50 0.91 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_5 - 310 Yae1_N PF09811.4 39 0.0021 10.1 3.4 1 1 5e-05 0.0037 9.3 3.4 5 21 255 271 253 274 0.85 # 2956 # 3885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_55 - 356 IstB_IS21 PF01695.12 178 5.5e-06 18.4 0.0 1 1 1.5e-07 1.2e-05 17.3 0.0 16 67 146 198 135 207 0.76 # 51264 # 52331 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.475 1_44 - 313 AAA_11 PF13086.1 236 0.00044 12.3 0.0 1 1 1e-05 0.00075 11.6 0.0 17 44 115 218 102 304 0.60 # 40024 # 40962 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_37 - 181 SSB PF00436.20 104 2e-45 145.5 0.4 1 1 3.3e-47 2.4e-45 145.2 0.4 1 100 6 106 6 113 0.96 # 35567 # 36109 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_5 - 310 Glyco_trans_4_3 PF12000.3 171 1.2e-05 17.5 0.0 1 2 0.0011 0.084 5.0 0.0 14 84 112 182 97 188 0.80 # 2956 # 3885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_5 - 310 Glyco_trans_4_3 PF12000.3 171 1.2e-05 17.5 0.0 2 2 2.9e-05 0.0022 10.1 0.0 19 66 209 257 199 262 0.90 # 2956 # 3885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_1 - 221 GTP_EFTU PF00009.22 188 0.00032 12.7 0.1 1 1 7.4e-06 0.00056 11.9 0.1 15 111 15 119 11 137 0.69 # 293 # 955 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_36 - 762 Zn_ribbon_recom PF13408.1 58 0.00059 12.6 9.2 1 2 0.0017 0.13 5.2 2.9 8 39 624 649 623 657 0.81 # 33217 # 35502 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 1_36 - 762 Zn_ribbon_recom PF13408.1 58 0.00059 12.6 9.2 2 2 5e-05 0.0038 10.1 0.4 4 31 669 691 667 704 0.83 # 33217 # 35502 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.451 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/8f381ba4-e977-4f4c-9aaf-a29569fdc9b5 # Target file: checkm_output/bins/pm1777/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1777/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8f381ba4-e977-4f4c-9aaf-a29569fdc9b5 checkm_output/bins/pm1777/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:47 2017 # [ok]