# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 202 HTH_38 PF13936.1 44 2e-09 25.4 1.0 1 1 1.7e-09 7e-09 23.6 0.0 15 44 168 197 160 197 0.93 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 Sigma70_r4_2 PF08281.7 54 5e-08 20.8 0.0 1 1 4e-08 1.6e-07 19.2 0.0 17 44 165 191 165 199 0.86 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 GerE PF00196.14 58 1.2e-06 16.3 0.0 1 1 5.1e-07 2e-06 15.5 0.0 11 35 166 190 165 201 0.88 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_23 PF13384.1 50 4.8e-09 24.2 0.2 1 1 1.2e-09 4.8e-09 24.2 0.2 10 42 166 198 160 201 0.92 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_7 PF02796.10 45 6.2e-07 17.7 0.0 1 1 4.4e-07 1.7e-06 16.3 0.0 13 38 165 190 156 190 0.93 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_29 PF13551.1 112 1.8e-06 16.5 0.4 1 2 0.0083 0.033 2.8 0.0 52 88 44 87 32 101 0.60 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_29 PF13551.1 112 1.8e-06 16.5 0.4 2 2 1.9e-05 7.6e-05 11.3 0.2 4 36 166 197 165 200 0.89 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_28 PF13518.1 52 1.1e-09 26.7 0.4 1 1 6.1e-10 2.4e-09 25.5 0.4 4 38 165 199 165 201 0.92 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_24 PF13412.1 48 9.6e-07 16.6 0.0 1 1 5.2e-07 2.1e-06 15.6 0.0 16 40 172 196 168 196 0.89 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_10 PF04967.7 53 1.8e-05 12.8 0.0 1 1 1.3e-05 5.2e-05 11.3 0.0 27 46 177 196 173 199 0.86 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 HTH_Tnp_ISL3 PF13542.1 52 1.7e-06 15.7 0.2 1 1 1e-06 4e-06 14.4 0.2 29 51 175 197 166 198 0.85 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 1_2 - 202 CENP-B_N PF04218.8 53 6.3e-06 14.0 0.0 1 1 3.9e-06 1.6e-05 12.8 0.0 21 45 172 196 165 199 0.87 # 1738 # 2343 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=15bp;gc_cont=0.558 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c581e636-1b9b-475f-a645-f541eef63aa6 # Target file: checkm_output/bins/pm1758/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1758/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c581e636-1b9b-475f-a645-f541eef63aa6 checkm_output/bins/pm1758/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:20 2017 # [ok]