# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 177 HTH_41 PF14502.1 48 8.4e-06 11.9 0.0 1 1 2.2e-05 2.2e-05 10.6 0.0 12 36 84 108 74 111 0.94 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_DeoR PF08220.7 57 1.2e-07 17.8 0.0 1 1 2e-07 2e-07 17.0 0.0 20 47 84 111 79 112 0.93 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_38 PF13936.1 44 5.7e-08 18.8 0.0 1 2 0.008 0.008 2.3 0.0 4 27 38 61 35 62 0.87 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_38 PF13936.1 44 5.7e-08 18.8 0.0 2 2 1.8e-06 1.8e-06 14.0 0.0 24 41 82 99 80 100 0.88 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 MarR PF01047.17 59 1.1e-08 21.3 0.0 1 1 1.9e-08 1.9e-08 20.4 0.0 19 50 80 111 65 116 0.93 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 GntR PF00392.16 64 2.7e-08 19.7 0.0 1 1 4.5e-08 4.5e-08 19.0 0.0 26 58 80 112 71 117 0.86 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_3 PF01381.17 55 3e-07 16.8 0.0 1 1 6.3e-07 6.3e-07 15.7 0.0 12 31 81 100 80 105 0.91 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_23 PF13384.1 50 3e-07 16.6 0.0 1 1 7.6e-07 7.6e-07 15.3 0.0 24 39 85 100 84 107 0.90 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_7 PF02796.10 45 1.1e-08 21.4 0.0 1 2 0.00035 0.00035 6.9 0.0 6 28 39 61 37 64 0.92 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_7 PF02796.10 45 1.1e-08 21.4 0.0 2 2 9.5e-06 9.5e-06 12.0 0.0 27 43 84 100 82 102 0.90 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 RepL PF05732.6 165 5.2e-06 12.2 0.0 1 1 9.3e-06 9.3e-06 11.3 0.0 60 130 62 137 17 142 0.79 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_29 PF13551.1 112 3.7e-06 13.6 1.2 1 2 0.0067 0.0067 3.1 0.4 45 83 5 41 2 61 0.77 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_29 PF13551.1 112 3.7e-06 13.6 1.2 2 2 0.00013 0.00013 8.6 0.0 18 39 84 105 75 112 0.83 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_28 PF13518.1 52 8.7e-08 18.6 0.0 1 1 2.4e-07 2.4e-07 17.3 0.0 18 38 84 104 78 111 0.84 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 FUR PF01475.14 120 5.7e-06 12.7 0.1 1 1 1.5e-05 1.5e-05 11.4 0.0 32 74 82 124 63 129 0.88 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_36 PF13730.1 55 1.7e-10 27.5 0.0 1 1 2.9e-10 2.9e-10 26.7 0.0 6 53 58 106 56 108 0.95 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_17 PF12728.2 51 1.4e-06 15.0 0.3 1 1 6.5e-06 6.5e-06 12.9 0.0 7 23 84 100 82 116 0.86 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_11 PF08279.7 55 6.9e-09 21.8 0.0 1 1 1.6e-08 1.6e-08 20.6 0.0 19 44 82 109 80 115 0.86 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 TrmB PF01978.14 68 6.3e-07 15.6 0.0 1 1 1.5e-06 1.5e-06 14.4 0.0 28 57 84 113 78 125 0.86 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_1 - 177 HTH_Crp_2 PF13545.1 76 2.2e-07 17.1 0.0 1 1 4.2e-07 4.2e-07 16.3 0.0 29 58 79 108 61 110 0.84 # 582 # 1112 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/3fa08fde-9041-4ede-a5d3-b68997d87a32 # Target file: checkm_output/bins/pm175/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm175/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3fa08fde-9041-4ede-a5d3-b68997d87a32 checkm_output/bins/pm175/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:51:05 2017 # [ok]