# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_4 - 95 HTH_22 PF13309.1 64 6.1e-07 21.3 0.1 1 1 4e-08 2.3e-06 19.5 0.0 19 64 4 44 1 44 0.88 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 424 Cdd1 PF11731.3 93 0.00024 13.2 0.0 1 1 1.1e-05 0.00064 11.8 0.0 10 47 177 214 143 227 0.86 # 7122 # 8393 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 2_5 - 277 rve_3 PF13683.1 67 4.7e-35 111.2 0.2 1 1 2e-36 1.1e-34 109.9 0.2 1 67 189 255 189 255 0.99 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 2_1 - 52 HTH_Tnp_Tc3_2 PF01498.13 72 0.00018 13.7 0.0 1 1 1.2e-05 0.00018 13.7 0.0 14 37 26 49 11 52 0.90 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 HTH_Tnp_Tc3_2 PF01498.13 72 0.00018 13.7 0.0 1 1 1.2e-05 0.00018 13.7 0.0 14 37 26 49 11 52 0.90 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 52 HTH_Tnp_Tc3_2 PF01498.13 72 0.00018 13.7 0.0 1 1 1.2e-05 0.00018 13.7 0.0 14 37 26 49 11 52 0.90 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 6_1 - 52 HTH_Tnp_Tc3_2 PF01498.13 72 0.00018 13.7 0.0 1 1 1.2e-05 0.00018 13.7 0.0 14 37 26 49 11 52 0.90 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_9 - 129 HTH_38 PF13936.1 44 0.00017 13.3 0.0 1 1 8.1e-06 0.00023 12.9 0.0 5 31 12 41 8 45 0.83 # 7989 # 8375 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 3_4 - 95 HTH_38 PF13936.1 44 0.00027 12.6 0.7 1 1 2.2e-05 0.00063 11.5 0.0 17 42 19 44 3 45 0.77 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_3 - 195 TetR_N PF00440.18 47 1.9e-08 26.1 0.0 1 1 1.3e-09 3.6e-08 25.1 0.0 2 46 13 57 12 58 0.95 # 1943 # 2527 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.607 3_4 - 95 TetR_N PF00440.18 47 7.5e-06 17.7 0.3 1 1 6.5e-07 1.8e-05 16.5 0.0 4 35 13 41 12 42 0.93 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_10 - 402 CbiA PF01656.18 195 8.6e-19 59.8 0.0 1 1 2.8e-20 1.6e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 2_5 - 277 Sigma70_r4_2 PF08281.7 54 4.8e-05 14.9 0.1 1 1 6.2e-06 0.00012 13.7 0.1 20 49 2 31 1 31 0.95 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 95 Sigma70_r4_2 PF08281.7 54 6.7e-05 14.5 1.8 1 1 6.7e-06 0.00013 13.6 0.1 22 48 18 44 11 47 0.83 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 325 Sigma70_r4_2 PF08281.7 54 0.0003 12.4 0.1 1 1 4.1e-05 0.00078 11.1 0.1 23 50 157 184 152 185 0.88 # 8475 # 9449 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 1_12 - 289 Rep_3 PF01051.16 222 6.8e-49 158.5 0.0 1 1 1.5e-50 8.4e-49 158.2 0.0 3 213 65 278 63 283 0.95 # 11516 # 12382 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.441 2_5 - 277 rve PF00665.21 120 7e-25 79.6 0.0 1 1 2.2e-25 3.2e-24 77.5 0.0 2 120 103 218 102 218 0.93 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_3 - 196 rve PF00665.21 120 5.4e-16 50.9 0.1 1 1 5.9e-17 8.4e-16 50.3 0.1 3 77 106 178 104 191 0.93 # 3347 # 3934 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 5_2 - 255 rve PF00665.21 120 5.9e-14 44.4 0.0 1 2 0.082 1.2 1.5 0.0 83 102 30 49 7 51 0.90 # 685 # 1449 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.612 5_2 - 255 rve PF00665.21 120 5.9e-14 44.4 0.0 2 2 6.7e-14 9.5e-13 40.5 0.0 8 117 73 179 69 182 0.90 # 685 # 1449 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.612 7_1 - 225 rve PF00665.21 120 1.9e-13 42.7 0.1 1 2 0.069 0.99 1.7 0.0 79 102 18 39 8 44 0.84 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 7_1 - 225 rve PF00665.21 120 1.9e-13 42.7 0.1 2 2 2.2e-13 3.1e-12 38.8 0.0 9 119 65 172 60 173 0.89 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_4 - 95 Terminase_5 PF06056.7 58 1.2e-05 17.0 0.0 1 1 3.4e-07 1.9e-05 16.3 0.0 12 39 21 48 12 63 0.87 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 325 CPSase_L_D3 PF02787.14 123 0.00015 13.6 0.2 1 1 7.2e-06 0.00041 12.3 0.2 48 97 133 185 124 190 0.84 # 8475 # 9449 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 2_6 - 88 HTH_Tnp_1 PF01527.15 76 1.5e-22 71.6 0.1 1 1 1.5e-23 1.7e-22 71.4 0.1 4 76 2 71 1 71 0.97 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_4 - 95 HTH_Tnp_1 PF01527.15 76 1.5e-19 61.9 0.2 1 1 1.7e-20 2e-19 61.5 0.2 4 76 3 74 1 74 0.94 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_1 - 52 HTH_Tnp_1 PF01527.15 76 0.00014 14.0 0.3 1 1 2.5e-05 0.00028 13.0 0.3 4 45 6 52 4 52 0.80 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 HTH_Tnp_1 PF01527.15 76 0.00014 14.0 0.3 1 1 2.5e-05 0.00028 13.0 0.3 4 45 6 52 4 52 0.80 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 52 HTH_Tnp_1 PF01527.15 76 0.00014 14.0 0.3 1 1 2.5e-05 0.00028 13.0 0.3 4 45 6 52 4 52 0.80 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 7_1 - 225 DDE_3 PF13358.1 146 0.00037 12.4 0.0 1 1 1.9e-05 0.0011 10.9 0.0 32 90 72 131 49 136 0.87 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_10 - 402 MipZ PF09140.6 261 1.1e-06 20.0 0.0 1 2 0.0027 0.15 3.1 0.0 3 50 111 163 109 193 0.73 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 1_10 - 402 MipZ PF09140.6 261 1.1e-06 20.0 0.0 2 2 8.7e-07 4.9e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 2_17 - 366 DDE_Tnp_1 PF01609.16 213 5e-35 113.0 0.0 1 1 3.4e-36 6.5e-35 112.7 0.0 6 213 73 307 68 307 0.96 # 12663 # 13760 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.350 2_8 - 308 DDE_Tnp_1 PF01609.16 213 4.6e-25 80.5 0.7 1 1 3.2e-26 6.1e-25 80.1 0.7 4 205 115 286 112 293 0.88 # 6441 # 7364 # -1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_11 - 225 DDE_Tnp_1 PF01609.16 213 9.6e-25 79.4 0.6 1 1 6.2e-26 1.2e-24 79.2 0.6 4 205 32 203 29 210 0.85 # 8515 # 9189 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_4 - 95 Sigma70_r4 PF04545.11 50 9e-05 13.9 0.7 1 2 2.2e-05 0.0013 10.2 0.2 13 33 15 35 11 37 0.83 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 Sigma70_r4 PF04545.11 50 9e-05 13.9 0.7 2 2 0.035 2 -0.0 0.0 6 14 75 83 75 89 0.83 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 325 HTH_37 PF13744.1 80 0.00051 12.0 2.6 1 1 3e-05 0.0017 10.3 0.2 27 53 156 182 134 185 0.87 # 8475 # 9449 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 2_5 - 277 rve_2 PF13333.1 52 4.6e-06 18.8 0.0 1 1 2.3e-07 1.3e-05 17.4 0.0 1 47 208 258 208 261 0.96 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 95 MerR_1 PF13411.1 69 5.2e-06 18.4 0.0 1 1 2e-07 1.2e-05 17.2 0.0 1 22 23 44 23 51 0.94 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 LZ_Tnp_IS481 PF13011.1 85 1.4e-05 17.5 0.1 1 1 3.3e-07 1.9e-05 17.1 0.1 17 50 14 47 2 87 0.84 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 HTH_Tnp_IS630 PF01710.11 120 3.4e-07 22.1 0.1 1 1 6.8e-09 3.9e-07 21.9 0.1 13 82 17 90 6 94 0.75 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_11 - 225 DDE_Tnp_1_3 PF13612.1 155 0.00021 13.2 0.0 1 1 9.9e-06 0.00057 11.8 0.0 47 112 65 134 62 155 0.85 # 8515 # 9189 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_1 - 52 HTH_32 PF13565.1 77 7.2e-08 25.3 0.0 1 1 1e-08 8.2e-08 25.1 0.0 26 76 5 50 2 51 0.84 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 HTH_32 PF13565.1 77 7.2e-08 25.3 0.0 1 1 1e-08 8.2e-08 25.1 0.0 26 76 5 50 2 51 0.84 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 52 HTH_32 PF13565.1 77 7.2e-08 25.3 0.0 1 1 1e-08 8.2e-08 25.1 0.0 26 76 5 50 2 51 0.84 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 5_1 - 52 HTH_32 PF13565.1 77 1.2e-07 24.7 0.0 1 1 1.6e-08 1.3e-07 24.5 0.0 26 76 5 50 2 51 0.81 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 7_1 - 225 HTH_32 PF13565.1 77 6e-06 19.2 0.7 1 1 2.5e-06 2e-05 17.5 0.1 42 76 10 40 2 41 0.80 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_2 - 255 HTH_32 PF13565.1 77 9.8e-05 15.3 0.2 1 1 4.7e-05 0.00038 13.4 0.2 37 76 15 50 6 51 0.83 # 685 # 1449 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.612 2_5 - 277 HTH_32 PF13565.1 77 0.00017 14.5 1.5 1 2 2.1e-05 0.00017 14.5 1.5 24 76 27 76 9 77 0.73 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 2_5 - 277 HTH_32 PF13565.1 77 0.00017 14.5 1.5 2 2 0.097 0.79 2.8 0.3 8 60 75 121 72 131 0.57 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 95 HTH_3 PF01381.17 55 2.1e-06 19.7 0.0 1 2 1.8e-07 1e-05 17.5 0.0 4 33 15 46 13 51 0.86 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 HTH_3 PF01381.17 55 2.1e-06 19.7 0.0 2 2 0.073 4.2 -0.5 0.0 39 52 80 93 79 94 0.80 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_17 - 366 DDE_Tnp_1_4 PF13701.1 449 2.1e-27 87.4 1.1 1 1 5.4e-29 3.1e-27 86.9 1.1 138 438 68 363 28 365 0.82 # 12663 # 13760 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.350 3_4 - 95 HTH_23 PF13384.1 50 5.3e-09 27.7 3.6 1 1 1.2e-09 7.7e-09 27.2 0.2 10 40 14 45 9 59 0.83 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 88 HTH_23 PF13384.1 50 6.6e-08 24.2 0.2 1 1 2.3e-08 1.4e-07 23.2 0.1 8 45 11 46 3 59 0.89 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 7_1 - 225 HTH_23 PF13384.1 50 6.6e-06 17.9 1.0 1 1 1.6e-05 0.0001 14.1 0.1 28 42 31 45 30 53 0.87 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_1 - 52 HTH_23 PF13384.1 50 5e-05 15.1 1.5 1 2 0.0094 0.06 5.3 0.1 7 27 11 35 7 36 0.72 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_1 - 52 HTH_23 PF13384.1 50 5e-05 15.1 1.5 2 2 0.00054 0.0034 9.3 0.2 28 39 41 52 40 52 0.89 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 HTH_23 PF13384.1 50 5e-05 15.1 1.5 1 2 0.0094 0.06 5.3 0.1 7 27 11 35 7 36 0.72 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_18 - 52 HTH_23 PF13384.1 50 5e-05 15.1 1.5 2 2 0.00054 0.0034 9.3 0.2 28 39 41 52 40 52 0.89 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 52 HTH_23 PF13384.1 50 5e-05 15.1 1.5 1 2 0.0094 0.06 5.3 0.1 7 27 11 35 7 36 0.72 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 6_1 - 52 HTH_23 PF13384.1 50 5e-05 15.1 1.5 2 2 0.00054 0.0034 9.3 0.2 28 39 41 52 40 52 0.89 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 5_1 - 52 HTH_23 PF13384.1 50 6.6e-05 14.7 1.4 1 2 0.013 0.081 4.9 0.0 10 27 14 35 7 36 0.69 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 5_1 - 52 HTH_23 PF13384.1 50 6.6e-05 14.7 1.4 2 2 0.00054 0.0034 9.3 0.2 28 39 41 52 40 52 0.89 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_9 - 325 HTH_23 PF13384.1 50 0.00022 13.0 0.1 1 1 0.00022 0.0014 10.5 0.0 9 40 152 183 151 188 0.88 # 8475 # 9449 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 2_5 - 277 HTH_23 PF13384.1 50 0.0011 10.8 4.6 1 1 0.00028 0.0018 10.2 0.0 16 37 6 28 2 38 0.82 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 95 HTH_7 PF02796.10 45 2.5e-05 16.3 0.0 1 1 9.2e-07 5.2e-05 15.2 0.0 13 44 14 45 8 46 0.89 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 HTH_19 PF12844.2 64 7.5e-06 18.1 0.1 1 1 2.6e-07 1.5e-05 17.2 0.0 9 34 19 44 16 62 0.89 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_9 - 129 Ribosomal_S20p PF01649.13 84 0.00016 14.2 0.1 1 1 4.8e-06 0.00027 13.4 0.1 6 59 56 109 53 118 0.75 # 7989 # 8375 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 2_6 - 88 HTH_29 PF13551.1 112 1e-06 21.0 0.1 1 1 2.3e-08 1.3e-06 20.7 0.1 3 37 12 45 11 85 0.81 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_15 - 214 TIGR03413 TIGR03413 248 8.3e-07 20.4 0.0 1 1 3.5e-08 1e-06 20.1 0.0 41 146 56 173 16 183 0.73 # 11782 # 12423 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 4_7 - 267 TIGR03413 TIGR03413 248 2.5e-06 18.8 0.0 1 1 1.3e-07 3.8e-06 18.2 0.0 30 164 93 240 71 242 0.66 # 3770 # 4570 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 7_1 - 225 DDE_Tnp_IS66 PF03050.9 271 2.6e-12 38.6 0.3 1 1 3.5e-13 3.3e-12 38.2 0.3 11 132 6 134 1 165 0.87 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_2 - 255 DDE_Tnp_IS66 PF03050.9 271 5.7e-10 30.9 0.2 1 1 8.8e-11 8.4e-10 30.3 0.2 11 133 16 144 8 190 0.86 # 685 # 1449 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.612 2_1 - 52 DDE_Tnp_IS66 PF03050.9 271 1.1e-05 16.8 0.0 1 1 1.2e-06 1.1e-05 16.8 0.0 4 46 9 51 6 52 0.90 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 DDE_Tnp_IS66 PF03050.9 271 1.1e-05 16.8 0.0 1 1 1.2e-06 1.1e-05 16.8 0.0 4 46 9 51 6 52 0.90 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 52 DDE_Tnp_IS66 PF03050.9 271 1.1e-05 16.8 0.0 1 1 1.2e-06 1.1e-05 16.8 0.0 4 46 9 51 6 52 0.90 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 5_1 - 52 DDE_Tnp_IS66 PF03050.9 271 2.1e-05 15.9 0.0 1 1 2.3e-06 2.2e-05 15.9 0.0 8 46 13 51 7 52 0.89 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_10 - 402 TIGR01968 TIGR01968 261 0.00048 11.3 0.0 1 2 0.0091 0.52 1.3 0.0 4 28 111 135 108 169 0.76 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 1_10 - 402 TIGR01968 TIGR01968 261 0.00048 11.3 0.0 2 2 0.00016 0.0089 7.1 0.0 102 138 235 271 226 288 0.87 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 1_8 - 424 IMS_HHH PF11798.3 32 1.5e-08 26.6 0.1 1 1 6.4e-10 3.6e-08 25.3 0.1 2 32 170 200 169 200 0.91 # 7122 # 8393 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 2_6 - 88 HTH_28 PF13518.1 52 2.5e-09 29.2 0.0 1 1 4.4e-10 3.5e-09 28.7 0.0 3 37 11 45 9 57 0.92 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_4 - 95 HTH_28 PF13518.1 52 1.1e-08 27.1 0.2 1 1 2.6e-09 2.1e-08 26.2 0.2 1 35 10 45 10 47 0.90 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 7_1 - 225 HTH_28 PF13518.1 52 3e-05 16.2 1.1 1 1 1.7e-05 0.00014 14.1 1.1 22 36 30 44 7 45 0.76 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_1 - 52 HTH_28 PF13518.1 52 0.00011 14.4 0.8 1 1 5.7e-05 0.00047 12.3 0.8 13 34 26 52 10 52 0.67 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 HTH_28 PF13518.1 52 0.00011 14.4 0.8 1 1 5.7e-05 0.00047 12.3 0.8 13 34 26 52 10 52 0.67 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 52 HTH_28 PF13518.1 52 0.00011 14.4 0.8 1 1 5.7e-05 0.00047 12.3 0.8 13 34 26 52 10 52 0.67 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 5_1 - 52 HTH_28 PF13518.1 52 0.00013 14.2 0.9 1 1 7.2e-05 0.00058 12.0 0.9 14 34 27 52 13 52 0.66 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_9 - 325 HTH_24 PF13412.1 48 3.5e-05 15.3 1.1 1 1 2.3e-06 6.5e-05 14.5 0.1 15 39 158 182 151 184 0.84 # 8475 # 9449 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 2_5 - 277 HTH_24 PF13412.1 48 0.00023 12.7 0.3 1 1 2.3e-05 0.00064 11.3 0.0 15 36 6 27 2 28 0.89 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 95 HTH_10 PF04967.7 53 1.3e-06 20.1 0.1 1 2 9.7e-07 5.5e-05 14.9 0.0 21 47 20 46 19 48 0.92 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 HTH_10 PF04967.7 53 1.3e-06 20.1 0.1 2 2 0.0052 0.3 2.9 0.0 2 14 75 87 75 89 0.90 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 HTH_31 PF13560.1 64 1.5e-05 17.3 0.2 1 1 4.8e-07 2.7e-05 16.5 0.2 12 53 20 61 11 63 0.90 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_14 - 152 T2SE PF00437.15 272 4.5e-06 17.8 0.0 1 1 9.8e-08 5.6e-06 17.5 0.0 114 222 22 143 5 149 0.82 # 11086 # 11541 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.443 3_2 - 359 Transposase_20 PF02371.11 87 2.1e-14 45.6 0.1 1 1 1.6e-15 4.5e-14 44.5 0.1 9 86 238 315 232 316 0.93 # 2052 # 3128 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.484 1_4 - 174 Transposase_20 PF02371.11 87 0.0013 11.0 5.3 1 3 0.016 0.46 2.8 0.1 44 67 5 27 3 35 0.86 # 3059 # 3580 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=14bp;gc_cont=0.709 1_4 - 174 Transposase_20 PF02371.11 87 0.0013 11.0 5.3 2 3 0.0017 0.047 6.0 0.3 44 67 42 64 40 72 0.86 # 3059 # 3580 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=14bp;gc_cont=0.709 1_4 - 174 Transposase_20 PF02371.11 87 0.0013 11.0 5.3 3 3 0.014 0.41 3.0 0.0 45 67 80 101 77 113 0.80 # 3059 # 3580 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=14bp;gc_cont=0.709 3_4 - 95 HTH_Tnp_ISL3 PF13542.1 52 2.2e-07 22.1 0.0 1 1 6e-09 3.4e-07 21.5 0.0 10 50 4 45 3 47 0.95 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 95 MerR PF00376.18 38 2.4e-05 16.0 0.0 1 1 8.6e-07 4.9e-05 15.0 0.0 1 21 24 44 24 45 0.91 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_1 - 52 Arg_repressor PF01316.16 70 0.00022 12.9 0.0 1 1 2.2e-05 0.00031 12.4 0.0 23 45 29 51 26 52 0.92 # 1 # 156 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_1 - 52 Arg_repressor PF01316.16 70 0.00024 12.8 0.0 1 1 2.2e-05 0.00031 12.4 0.0 23 45 29 51 26 52 0.92 # 1 # 156 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_18 - 52 Arg_repressor PF01316.16 70 0.00024 12.8 0.0 1 1 2.2e-05 0.00031 12.4 0.0 23 45 29 51 26 52 0.92 # 13937 # 14092 # 1 # ID=2_18;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 52 Arg_repressor PF01316.16 70 0.00024 12.8 0.0 1 1 2.2e-05 0.00031 12.4 0.0 23 45 29 51 26 52 0.92 # 1 # 156 # -1 # ID=6_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 168 DDE_Tnp_IS1 PF03400.8 131 6.6e-71 228.6 0.6 1 1 1.4e-72 7.9e-71 228.4 0.6 1 131 37 167 37 167 0.99 # 3949 # 4452 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.548 5_2 - 255 DDE_Tnp_IS240 PF13610.1 140 5.8e-54 174.0 0.0 1 1 5.2e-55 7.5e-54 173.6 0.0 3 139 73 211 71 212 0.98 # 685 # 1449 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.612 7_1 - 225 DDE_Tnp_IS240 PF13610.1 140 3.9e-53 171.3 0.0 1 1 3.7e-54 5.3e-53 170.9 0.0 4 139 65 202 63 203 0.99 # 53 # 727 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_3 - 196 DDE_Tnp_IS240 PF13610.1 140 0.00011 14.3 0.1 1 1 1.4e-05 0.0002 13.4 0.1 2 67 110 177 109 190 0.84 # 3347 # 3934 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 2_5 - 277 DDE_Tnp_IS240 PF13610.1 140 0.00052 12.1 0.0 1 1 5.4e-05 0.00076 11.6 0.0 59 139 166 247 152 248 0.76 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 95 HTH_26 PF13443.1 63 8.5e-05 14.9 0.0 1 1 5.6e-06 0.00016 14.0 0.0 6 32 18 44 16 50 0.90 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 88 HTH_26 PF13443.1 63 0.00016 14.0 0.2 1 2 8.1e-05 0.0023 10.3 0.0 7 33 17 43 14 59 0.84 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_6 - 88 HTH_26 PF13443.1 63 0.00016 14.0 0.2 2 2 0.044 1.3 1.5 0.4 1 20 64 83 64 86 0.85 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_4 - 95 HTH_17 PF12728.2 51 2.1e-06 20.1 0.1 1 1 8.2e-08 4.7e-06 19.0 0.0 2 23 23 44 22 53 0.93 # 3982 # 4266 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 88 HTH_11 PF08279.7 55 0.00036 12.3 0.0 1 2 3.4e-05 0.002 10.0 0.0 3 31 8 36 7 39 0.93 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_6 - 88 HTH_11 PF08279.7 55 0.00036 12.3 0.0 2 2 0.045 2.6 -0.0 0.0 34 46 53 65 52 74 0.76 # 5376 # 5639 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_8 - 308 DDE_Tnp_1_5 PF13737.1 112 8.1e-49 156.6 0.0 1 2 6.5e-49 1.2e-47 152.8 0.0 1 112 19 130 19 130 0.96 # 6441 # 7364 # -1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_8 - 308 DDE_Tnp_1_5 PF13737.1 112 8.1e-49 156.6 0.0 2 2 0.094 1.8 0.9 0.0 42 68 263 291 234 297 0.82 # 6441 # 7364 # -1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_3 - 104 DDE_Tnp_1_5 PF13737.1 112 1.1e-26 85.3 0.0 1 1 8.2e-28 1.6e-26 84.9 0.0 1 62 34 95 34 97 0.96 # 2435 # 2746 # -1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 2_11 - 225 DDE_Tnp_1_5 PF13737.1 112 4.1e-14 44.8 0.0 1 2 5.6e-14 1.1e-12 40.3 0.0 66 112 1 47 1 47 0.89 # 8515 # 9189 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_11 - 225 DDE_Tnp_1_5 PF13737.1 112 4.1e-14 44.8 0.0 2 2 0.068 1.3 1.4 0.0 42 68 180 208 164 214 0.82 # 8515 # 9189 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_5 - 304 LYTB PF02401.13 281 0.00047 11.2 0.0 1 1 2e-05 0.0011 9.9 0.0 236 272 81 117 70 124 0.91 # 3762 # 4673 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_1 - 579 Seryl_tRNA_N PF02403.17 108 0.00068 11.8 8.8 1 3 0.0043 0.25 3.6 0.1 39 104 280 346 259 350 0.90 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 Seryl_tRNA_N PF02403.17 108 0.00068 11.8 8.8 2 3 0.0014 0.077 5.2 0.1 27 59 377 409 365 430 0.85 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 Seryl_tRNA_N PF02403.17 108 0.00068 11.8 8.8 3 3 0.00099 0.057 5.6 1.7 17 107 449 538 443 539 0.75 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 AAA_13 PF13166.1 712 0.002 8.6 17.5 1 2 2.6e-05 0.0015 9.1 2.7 365 467 304 408 255 421 0.52 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 3_1 - 579 AAA_13 PF13166.1 712 0.002 8.6 17.5 2 2 0.00045 0.026 5.0 7.1 322 439 445 572 440 578 0.74 # 1 # 1737 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_10 - 402 AAA_31 PF13614.1 157 5.4e-05 15.3 0.0 1 1 5.5e-06 0.00031 12.8 0.0 108 147 235 273 230 279 0.86 # 9449 # 10654 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 4_2 - 280 Pterin_bind PF00809.17 210 1.5e-58 189.7 0.0 1 1 3e-60 1.7e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 374 # 1213 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_8 - 424 DNA_pol_lambd_f PF10391.4 52 3e-05 15.7 0.1 1 1 4.5e-06 0.00025 12.7 0.0 5 29 182 206 178 217 0.87 # 7122 # 8393 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 2_5 - 277 HTH_21 PF13276.1 60 1.2e-16 52.6 8.6 1 1 8.4e-18 2.4e-16 51.7 8.6 2 60 34 90 33 91 0.87 # 4519 # 5349 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_3 - 196 HTH_21 PF13276.1 60 4.9e-15 47.5 1.7 1 1 3.4e-16 9.8e-15 46.5 1.7 3 55 27 78 24 87 0.91 # 3347 # 3934 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f406bb9f-f269-43f0-9160-ddcc1ceaa26d # Target file: checkm_output/bins/pm1730/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1730/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f406bb9f-f269-43f0-9160-ddcc1ceaa26d checkm_output/bins/pm1730/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:50:45 2017 # [ok]