# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 194 HTH_IclR PF09339.5 52 3.6e-05 13.0 0.1 1 1 3.3e-05 0.00033 10.0 0.1 18 38 146 178 107 180 0.65 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_1 - 60 HTH_Tnp_Tc3_2 PF01498.13 72 1.6e-05 14.6 0.0 1 1 2.9e-06 2.9e-05 13.8 0.0 14 39 16 41 7 46 0.89 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_3 - 688 FtsK_SpoIIIE PF01580.13 205 8.4e-08 21.5 0.0 1 2 6.8e-08 6.8e-07 18.6 0.0 22 80 157 221 138 234 0.64 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_3 - 688 FtsK_SpoIIIE PF01580.13 205 8.4e-08 21.5 0.0 2 2 0.04 0.4 -0.3 0.0 180 204 552 576 512 577 0.82 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_1 - 60 HTH_38 PF13936.1 44 2.6e-05 13.4 0.0 1 1 6.7e-06 6.7e-05 12.2 0.0 30 43 30 43 15 44 0.94 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_5 - 194 DUF1492 PF07374.6 100 1.8e-06 17.7 0.6 1 2 0.08 0.8 -0.4 0.1 36 41 50 55 15 86 0.54 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_5 - 194 DUF1492 PF07374.6 100 1.8e-06 17.7 0.6 2 2 6.5e-07 6.5e-06 16.0 0.1 58 96 144 183 105 187 0.77 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_10 - 154 rve PF00665.21 120 1.3e-09 27.9 0.0 1 1 1.8e-10 1.8e-09 27.4 0.0 21 119 4 101 1 102 0.88 # 9940 # 10401 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.526 1_5 - 194 HTH_Tnp_1 PF01527.15 76 1.6e-05 14.6 0.0 1 1 6.1e-06 6.1e-05 12.7 0.0 10 46 145 181 143 186 0.92 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_3 - 688 AAA_22 PF13401.1 131 3.3e-06 16.9 0.1 1 2 6e-06 6e-05 12.9 0.0 5 41 176 215 174 237 0.77 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_3 - 688 AAA_22 PF13401.1 131 3.3e-06 16.9 0.1 2 2 0.026 0.26 1.1 0.0 51 100 459 534 420 563 0.68 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_1 - 60 HTH_32 PF13565.1 77 2.9e-07 21.0 0.0 1 1 4.6e-08 4.6e-07 20.3 0.0 48 76 15 40 5 41 0.84 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_8 - 140 HTH_3 PF01381.17 55 1.7e-13 40.0 0.0 1 1 5.2e-14 2.6e-13 39.4 0.0 2 53 84 134 83 136 0.93 # 8535 # 8954 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 60 HTH_3 PF01381.17 55 4.3e-05 13.1 0.0 1 1 3.1e-05 0.00015 11.3 0.0 5 39 11 49 10 50 0.67 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_1 - 60 HTH_23 PF13384.1 50 6.1e-07 18.8 1.2 1 2 0.03 0.3 0.7 0.0 16 27 13 25 7 28 0.75 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_1 - 60 HTH_23 PF13384.1 50 6.1e-07 18.8 1.2 2 2 2.8e-07 2.8e-06 16.7 0.5 28 42 31 45 30 53 0.86 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_5 - 194 HTH_7 PF02796.10 45 3.6e-05 13.3 0.7 1 1 1e-05 0.0001 11.9 0.1 1 44 141 181 141 182 0.90 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_8 - 140 HTH_19 PF12844.2 64 3.6e-14 42.3 0.0 1 1 7.1e-15 7.1e-14 41.4 0.0 4 60 83 138 81 139 0.93 # 8535 # 8954 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 60 DDE_Tnp_IS66 PF03050.9 271 4.4e-07 18.9 0.0 1 1 4.6e-08 4.6e-07 18.9 0.0 15 55 10 50 8 58 0.89 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_3 - 688 TrwB_AAD_bind PF10412.4 386 7.8e-10 27.4 0.0 1 2 1.8e-08 1.8e-07 19.6 0.0 10 58 170 226 162 232 0.88 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_3 - 688 TrwB_AAD_bind PF10412.4 386 7.8e-10 27.4 0.0 2 2 0.00041 0.0041 5.3 0.0 261 321 554 606 551 617 0.84 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_8 - 140 NAD_synthase PF02540.12 242 4.6e-05 12.0 0.0 1 2 2.1e-05 0.00021 9.8 0.0 39 103 4 70 1 75 0.88 # 8535 # 8954 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_8 - 140 NAD_synthase PF02540.12 242 4.6e-05 12.0 0.0 2 2 0.026 0.26 -0.3 0.0 154 171 117 134 110 137 0.80 # 8535 # 8954 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_3 - 688 DUF87 PF01935.12 229 4.1e-29 91.6 0.0 1 1 2.8e-28 2.8e-27 85.6 0.0 2 229 154 506 153 506 0.83 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_1 - 60 HTH_28 PF13518.1 52 7.7e-07 18.8 1.0 1 2 0.1 0.5 0.2 0.0 21 27 13 19 12 29 0.75 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_1 - 60 HTH_28 PF13518.1 52 7.7e-07 18.8 1.0 2 2 6.8e-07 3.4e-06 16.7 0.8 23 36 31 44 17 47 0.91 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_5 - 194 HTH_28 PF13518.1 52 6.6e-05 12.6 0.0 1 1 3.4e-05 0.00017 11.3 0.0 2 35 147 181 146 181 0.82 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_8 - 140 HTH_31 PF13560.1 64 2.4e-07 20.6 0.0 1 1 4.2e-08 4.2e-07 19.9 0.0 4 59 81 134 80 138 0.93 # 8535 # 8954 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 60 Arg_repressor PF01316.16 70 3.4e-05 13.1 0.0 1 1 4.6e-06 4.6e-05 12.7 0.0 23 46 19 42 16 45 0.92 # 2 # 181 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_10 - 154 DDE_Tnp_IS240 PF13610.1 140 1.4e-46 147.6 0.1 1 1 1.5e-47 1.5e-46 147.5 0.1 12 139 2 131 1 132 0.98 # 9940 # 10401 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.526 1_8 - 140 HTH_26 PF13443.1 63 4.3e-10 29.4 0.0 1 1 1.5e-10 7.7e-10 28.6 0.0 2 57 83 136 82 139 0.94 # 8535 # 8954 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 194 HTH_26 PF13443.1 63 1.5e-05 14.9 0.1 1 1 7.3e-06 3.7e-05 13.6 0.1 6 36 154 184 149 191 0.84 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_3 - 688 AAA_10 PF12846.2 304 1.3e-21 66.9 0.0 1 1 7.5e-22 7.5e-21 64.4 0.0 2 297 176 605 175 610 0.67 # 721 # 2784 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388 1_5 - 194 Phage_AlpA PF05930.7 51 2.6e-06 16.9 0.1 1 1 5.4e-07 5.4e-06 15.8 0.1 5 24 160 179 157 184 0.87 # 4249 # 4830 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/dce3fa9f-60f0-4461-b34c-12761542b766 # Target file: checkm_output/bins/pm173/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm173/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dce3fa9f-60f0-4461-b34c-12761542b766 checkm_output/bins/pm173/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:50:30 2017 # [ok]