# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 265 rve_3 PF13683.1 67 1.5e-15 46.0 0.1 1 1 3.1e-16 2.5e-15 45.2 0.1 4 67 192 256 189 256 0.95 # 5958 # 6752 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_4 - 216 HTH_8 PF02954.14 42 5.3e-07 18.6 1.5 1 2 0.012 0.097 1.7 0.1 1 12 117 128 117 128 0.88 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_4 - 216 HTH_8 PF02954.14 42 5.3e-07 18.6 1.5 2 2 6.3e-07 5e-06 15.4 0.1 11 37 159 185 150 185 0.93 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_4 - 216 TetR_N PF00440.18 47 2.6e-07 19.7 0.0 1 2 0.084 0.67 -0.9 0.0 24 34 25 35 24 36 0.89 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_4 - 216 TetR_N PF00440.18 47 2.6e-07 19.7 0.0 2 2 2.1e-07 1.7e-06 17.1 0.0 16 43 166 193 165 196 0.91 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_6 - 265 rve PF00665.21 120 3.8e-30 93.8 0.0 1 1 1e-30 8.1e-30 92.8 0.0 2 120 102 218 101 218 0.97 # 5958 # 6752 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_5 - 92 HTH_Tnp_1 PF01527.15 76 6.7e-11 31.5 0.0 1 1 2.4e-11 9.7e-11 31.0 0.0 7 75 5 70 3 71 0.89 # 5623 # 5898 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.424 1_4 - 216 HTH_Tnp_1 PF01527.15 76 9.2e-06 15.0 0.0 1 1 4.8e-06 1.9e-05 14.0 0.0 18 44 162 187 151 197 0.86 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_6 - 265 rve_2 PF13333.1 52 7.4e-17 50.6 0.1 1 1 1.7e-17 1.3e-16 49.8 0.1 1 50 208 262 208 263 0.92 # 5958 # 6752 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_5 - 92 HTH_23 PF13384.1 50 3e-05 13.1 0.0 1 1 7.6e-06 6.1e-05 12.1 0.0 12 38 16 42 5 47 0.81 # 5623 # 5898 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.424 1_4 - 216 HTH_7 PF02796.10 45 1.7e-06 17.2 0.0 1 1 4.5e-07 3.6e-06 16.2 0.0 1 41 145 186 145 188 0.72 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_1 - 131 RepL PF05732.6 165 1.5e-07 20.1 0.0 1 1 2e-08 1.6e-07 20.0 0.0 58 135 13 94 1 111 0.85 # 1198 # 1590 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.377 1_1 - 131 HTH_28 PF13518.1 52 4.6e-05 12.8 0.0 1 1 1.4e-05 0.00011 11.6 0.0 18 40 37 59 31 63 0.83 # 1198 # 1590 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.377 1_1 - 131 HTH_36 PF13730.1 55 1.6e-05 14.4 0.0 1 1 3.4e-06 2.7e-05 13.7 0.0 6 55 11 61 10 61 0.79 # 1198 # 1590 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.377 1_6 - 265 DDE_Tnp_IS240 PF13610.1 140 5.8e-11 31.9 0.0 1 1 1.6e-11 1.3e-10 30.7 0.0 2 134 107 243 106 249 0.87 # 5958 # 6752 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_4 - 216 HTH_26 PF13443.1 63 1.1e-06 18.3 0.0 1 1 3.3e-07 2.6e-06 17.0 0.0 5 31 161 187 157 194 0.92 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_4 - 216 HTH_17 PF12728.2 51 2.2e-05 14.1 0.2 1 1 3.3e-05 0.00013 11.6 0.0 3 27 168 193 168 201 0.82 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_1 - 131 HTH_17 PF12728.2 51 4.8e-05 13.0 0.0 1 1 2.2e-05 8.9e-05 12.1 0.0 7 38 37 64 33 70 0.78 # 1198 # 1590 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.377 1_1 - 131 HTH_11 PF08279.7 55 4.6e-07 18.9 0.0 1 1 2.6e-07 1e-06 17.7 0.0 19 46 35 62 34 68 0.88 # 1198 # 1590 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.377 1_4 - 216 HTH_11 PF08279.7 55 3e-05 13.1 0.1 1 1 4.8e-05 0.00019 10.5 0.0 12 36 163 187 156 188 0.86 # 4945 # 5592 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_1 - 131 HTH_Crp_2 PF13545.1 76 5.2e-05 12.4 0.0 1 1 1.3e-05 0.00011 11.5 0.0 26 58 29 61 13 65 0.82 # 1198 # 1590 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.377 1_6 - 265 HTH_21 PF13276.1 60 9e-12 34.3 3.5 1 1 1.1e-12 9e-12 34.3 3.5 6 59 26 78 18 79 0.82 # 5958 # 6752 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/2458833f-312d-4aeb-9789-521f640bc463 # Target file: checkm_output/bins/pm1685/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1685/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2458833f-312d-4aeb-9789-521f640bc463 checkm_output/bins/pm1685/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:21 2017 # [ok]