# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 265 rve_3 PF13683.1 67 1.7e-15 46.0 0.1 1 1 3.1e-16 2.8e-15 45.2 0.1 4 67 192 256 189 256 0.95 # 7346 # 8140 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_5 - 216 HTH_8 PF02954.14 42 6e-07 18.6 1.5 1 2 0.012 0.11 1.7 0.1 1 12 117 128 117 128 0.88 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_5 - 216 HTH_8 PF02954.14 42 6e-07 18.6 1.5 2 2 6.3e-07 5.7e-06 15.4 0.1 11 37 159 185 150 185 0.93 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_5 - 216 TetR_N PF00440.18 47 2.9e-07 19.7 0.0 1 2 0.084 0.75 -0.9 0.0 24 34 25 35 24 36 0.89 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_5 - 216 TetR_N PF00440.18 47 2.9e-07 19.7 0.0 2 2 2.1e-07 1.9e-06 17.1 0.0 16 43 166 193 165 196 0.91 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_7 - 265 rve PF00665.21 120 4.3e-30 93.8 0.0 1 1 1e-30 9.1e-30 92.8 0.0 2 120 102 218 101 218 0.97 # 7346 # 8140 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_6 - 92 HTH_Tnp_1 PF01527.15 76 7.5e-11 31.5 0.0 1 1 2.4e-11 1.1e-10 31.0 0.0 7 75 5 70 3 71 0.89 # 7011 # 7286 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.424 1_5 - 216 HTH_Tnp_1 PF01527.15 76 1e-05 15.0 0.0 1 1 4.8e-06 2.2e-05 14.0 0.0 18 44 162 187 151 197 0.86 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_2 - 156 HTH_37 PF13744.1 80 1.3e-05 14.5 0.1 1 1 1.4e-06 1.3e-05 14.5 0.1 28 67 12 49 7 57 0.82 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_7 - 265 rve_2 PF13333.1 52 8.3e-17 50.6 0.1 1 1 1.7e-17 1.5e-16 49.8 0.1 1 50 208 262 208 263 0.92 # 7346 # 8140 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_2 - 156 HTH_25 PF13413.1 62 3.6e-08 22.6 0.0 1 1 6.6e-09 5.9e-08 21.9 0.0 2 38 7 43 6 53 0.90 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 156 HTH_3 PF01381.17 55 1.3e-19 59.4 0.0 1 1 2.4e-20 2.2e-19 58.7 0.0 2 55 8 60 7 60 0.95 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 156 HTH_23 PF13384.1 50 6.6e-07 18.5 1.4 1 1 2.3e-07 1e-06 17.9 0.0 6 37 5 35 1 40 0.88 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_6 - 92 HTH_23 PF13384.1 50 3.4e-05 13.1 0.0 1 1 1.5e-05 6.9e-05 12.1 0.0 12 38 16 42 5 47 0.81 # 7011 # 7286 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.424 1_5 - 216 HTH_7 PF02796.10 45 1.9e-06 17.2 0.0 1 1 4.5e-07 4e-06 16.2 0.0 1 41 145 186 145 188 0.72 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_2 - 156 HTH_19 PF12844.2 64 9.3e-13 37.7 0.0 1 1 2e-13 1.8e-12 36.8 0.0 2 58 5 60 4 63 0.95 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 156 HTH_28 PF13518.1 52 0.0006 9.4 0.1 1 2 6.7e-05 0.0006 9.4 0.1 9 32 12 35 10 38 0.87 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 156 HTH_28 PF13518.1 52 0.0006 9.4 0.1 2 2 0.069 0.62 -0.2 0.0 13 25 44 56 42 59 0.87 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 156 HTH_31 PF13560.1 64 4.4e-15 45.3 0.5 1 1 4.9e-16 4.4e-15 45.3 0.5 7 60 8 59 6 62 0.95 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 156 HTH_36 PF13730.1 55 1.6e-05 14.6 0.0 1 1 4.2e-06 3.8e-05 13.4 0.0 27 44 17 34 10 35 0.88 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_7 - 265 DDE_Tnp_IS240 PF13610.1 140 6.5e-11 31.9 0.0 1 1 1.6e-11 1.5e-10 30.7 0.0 2 134 107 243 106 249 0.87 # 7346 # 8140 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 1_2 - 156 HTH_26 PF13443.1 63 6.1e-11 32.0 0.0 1 1 2.2e-11 9.8e-11 31.3 0.0 9 60 14 63 6 66 0.90 # 533 # 1000 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_5 - 216 HTH_26 PF13443.1 63 1.2e-06 18.3 0.0 1 1 6.6e-07 3e-06 17.0 0.0 5 31 161 187 157 194 0.92 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_5 - 216 HTH_17 PF12728.2 51 2.4e-05 14.1 0.2 1 1 1.7e-05 0.00015 11.6 0.0 3 27 168 193 168 201 0.82 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_5 - 216 HTH_11 PF08279.7 55 3.3e-05 13.1 0.1 1 2 0.052 0.47 -0.2 0.0 23 41 68 86 68 108 0.68 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_5 - 216 HTH_11 PF08279.7 55 3.3e-05 13.1 0.1 2 2 2.4e-05 0.00021 10.5 0.0 12 36 163 187 156 188 0.86 # 6333 # 6980 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_7 - 265 HTH_21 PF13276.1 60 1e-11 34.3 3.5 1 1 1.1e-12 1e-11 34.3 3.5 6 59 26 78 18 79 0.82 # 7346 # 8140 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/55e86a43-9195-465f-8d15-1b36485e4643 # Target file: checkm_output/bins/pm1684/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1684/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/55e86a43-9195-465f-8d15-1b36485e4643 checkm_output/bins/pm1684/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:21 2017 # [ok]