# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_59 - 518 ABC_tran PF00005.22 137 8.9e-05 15.8 0.1 1 1 5.3e-06 0.00028 14.2 0.0 12 37 226 251 217 289 0.81 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_47 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 4.3e-06 0.00023 14.5 0.0 16 35 162 181 152 211 0.87 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_9 - 425 HHH_5 PF14520.1 60 0.0011 12.2 0.0 1 1 2.6e-05 0.0027 10.9 0.0 9 37 184 212 172 229 0.92 # 5944 # 7218 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_18 - 314 HTH_38 PF13936.1 44 0.049 6.3 6.1 1 2 0.0042 0.45 3.2 5.5 5 30 245 287 243 290 0.77 # 13494 # 14435 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_18 - 314 HTH_38 PF13936.1 44 0.049 6.3 6.1 2 2 0.0059 0.63 2.7 0.2 10 27 281 298 277 305 0.59 # 13494 # 14435 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_47 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 1 2 0.017 1.8 1.3 0.0 14 60 61 108 61 127 0.88 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_47 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 2 2 3.1e-06 0.00033 13.4 0.0 5 26 162 183 160 193 0.90 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_14 - 199 TilS_C PF11734.3 74 0.00029 13.1 0.0 1 1 6.3e-06 0.00068 11.9 0.0 29 45 7 23 6 28 0.88 # 10349 # 10945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_59 - 518 AAA_19 PF13245.1 76 0.0001 15.1 0.0 1 1 2.6e-06 0.00028 13.7 0.0 10 46 226 259 218 268 0.79 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_5 - 215 CbiA PF01656.18 195 1.3e-09 30.7 0.1 1 1 1.8e-11 1.9e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_72 - 96 Sigma70_r4_2 PF08281.7 54 5.2e-08 25.3 0.1 1 1 1.4e-09 1.5e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 63931 # 64218 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 4_1 - 244 rve PF00665.21 120 3.8e-13 42.6 0.1 1 2 0.015 1.6 1.9 0.0 78 102 36 58 13 63 0.83 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 4_1 - 244 rve PF00665.21 120 3.8e-13 42.6 0.1 2 2 6.6e-14 7.1e-12 38.5 0.0 9 119 84 191 79 192 0.89 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_59 - 518 AAA_23 PF13476.1 202 0.00014 15.2 0.2 1 1 9.7e-06 0.00052 13.4 0.0 20 38 226 244 208 249 0.84 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_47 - 383 AAA_23 PF13476.1 202 0.00024 14.5 0.0 1 1 7.3e-06 0.00039 13.8 0.0 19 40 157 178 142 209 0.83 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 2_15 - 283 TIGR00573 TIGR00573 217 1.7e-15 49.8 0.0 1 1 2.7e-17 2.9e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 10596 # 11444 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_59 - 518 AAA_30 PF13604.1 196 0.00034 13.2 0.0 1 1 5.8e-06 0.00062 12.4 0.0 4 44 211 251 209 276 0.84 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 4_1 - 244 HTH_Tnp_1 PF01527.15 76 0.00028 13.8 0.3 1 1 5.8e-06 0.00062 12.8 0.3 4 51 15 67 13 72 0.79 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_14 - 199 TIGR02433 TIGR02433 47 0.0002 13.5 0.1 1 1 4.4e-06 0.00048 12.3 0.0 29 45 7 23 6 25 0.90 # 10349 # 10945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_72 - 96 GerE PF00196.14 58 1.5e-06 20.5 0.0 1 1 1.9e-08 2e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 63931 # 64218 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_26 - 777 TraG-D_C PF12696.2 128 5.7e-07 22.5 0.2 1 1 1.2e-08 1.3e-06 21.3 0.2 1 88 437 524 437 554 0.82 # 20069 # 22399 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 1 2 0.0008 0.086 4.8 0.5 7 25 8 26 2 38 0.71 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_5 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 2 2 9e-09 9.6e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 2_16 - 421 DDE_Tnp_1 PF01609.16 213 8.5e-35 113.2 0.2 1 1 1.7e-36 1.8e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 11712 # 12974 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_66 - 198 Trp_repressor PF01371.14 88 0.0003 13.7 0.0 1 1 4.1e-06 0.00044 13.2 0.0 1 40 103 142 103 151 0.95 # 59817 # 60410 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.365 1_59 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 1 3 0.064 6.8 -0.1 0.0 38 57 81 100 52 110 0.81 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_59 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 2 3 0.00033 0.035 7.3 0.0 1 21 228 248 228 278 0.83 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_59 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 3 3 0.017 1.8 1.8 0.0 9 66 442 508 436 515 0.64 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_7 - 327 Hydantoinase_A PF01968.13 290 7.6e-09 28.0 0.2 1 2 1.7e-06 0.00018 13.6 0.1 66 98 154 185 141 192 0.79 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_7 - 327 Hydantoinase_A PF01968.13 290 7.6e-09 28.0 0.2 2 2 5.5e-06 0.00059 11.9 0.0 211 263 244 296 201 301 0.86 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_59 - 518 AAA_16 PF13191.1 185 0.0001 15.3 0.0 1 1 6.4e-06 0.00034 13.6 0.0 8 51 213 252 212 301 0.78 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_47 - 383 AAA_16 PF13191.1 185 0.00031 13.7 0.0 1 1 1.2e-05 0.00066 12.7 0.0 27 52 160 188 148 282 0.82 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_47 - 383 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 1 4.9e-07 2.6e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_59 - 518 AAA_22 PF13401.1 131 0.00028 14.0 0.0 1 1 1.3e-05 0.00068 12.8 0.0 6 28 227 249 222 330 0.77 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_21 - 283 Methyltransf_27 PF13708.1 194 7.7e-67 217.6 0.0 1 1 9.6e-69 1e-66 217.2 0.0 2 194 85 278 84 278 0.96 # 15529 # 16377 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_59 - 518 AAA_29 PF13555.1 62 3e-05 16.5 0.0 1 1 1.1e-06 6.1e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_47 - 383 AAA_29 PF13555.1 62 4.1e-05 16.1 0.0 1 1 2.3e-06 0.00012 14.6 0.0 26 44 160 178 151 186 0.83 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 4_1 - 244 HTH_32 PF13565.1 77 7.9e-07 22.9 0.1 1 1 3.2e-08 3.4e-06 20.9 0.0 24 76 12 59 3 60 0.83 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_7 - 327 TIGR02350 TIGR02350 596 9.8e-05 13.5 0.6 1 3 0.083 8.8 -2.9 0.0 362 381 80 99 67 130 0.59 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_7 - 327 TIGR02350 TIGR02350 596 9.8e-05 13.5 0.6 2 3 0.00011 0.011 6.7 0.0 175 200 159 181 142 198 0.82 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_7 - 327 TIGR02350 TIGR02350 596 9.8e-05 13.5 0.6 3 3 0.00048 0.051 4.5 0.0 271 348 220 295 205 308 0.85 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_15 - 283 RNase_H_2 PF13482.1 164 0.00011 15.0 0.0 1 1 7.8e-06 0.00083 12.2 0.0 1 79 105 199 105 255 0.57 # 10596 # 11444 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_20 - 84 HTH_3 PF01381.17 55 3e-05 16.9 0.0 1 2 1e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_20 - 84 HTH_3 PF01381.17 55 3e-05 16.9 0.0 2 2 0.083 8.9 -0.7 0.0 39 52 67 80 65 83 0.66 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_67 - 99 YMF19 PF02326.10 86 0.00037 14.1 1.0 1 1 3.5e-06 0.00037 14.1 1.0 13 68 43 95 32 98 0.82 # 60407 # 60703 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 2_16 - 421 DDE_Tnp_1_4 PF13701.1 449 3.4e-27 87.6 3.5 1 2 0.0052 0.55 1.2 0.0 11 42 5 36 3 62 0.72 # 11712 # 12974 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 2_16 - 421 DDE_Tnp_1_4 PF13701.1 449 3.4e-27 87.6 3.5 2 2 1.5e-28 1.6e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 11712 # 12974 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 4_1 - 244 HTH_23 PF13384.1 50 9.4e-06 18.3 0.5 1 2 0.05 1.8 1.5 0.0 7 27 20 44 16 45 0.69 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 4_1 - 244 HTH_23 PF13384.1 50 9.4e-06 18.3 0.5 2 2 5.9e-06 0.00021 14.0 0.1 28 42 50 64 49 71 0.87 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_20 - 84 HTH_23 PF13384.1 50 3.8e-05 16.3 0.3 1 2 1.1e-05 0.00038 13.2 0.1 17 33 14 30 6 38 0.86 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_20 - 84 HTH_23 PF13384.1 50 3.8e-05 16.3 0.3 2 2 0.072 2.6 1.0 0.0 5 22 63 82 59 83 0.75 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_72 - 96 HTH_23 PF13384.1 50 3.9e-05 16.3 0.0 1 1 1.5e-06 5.4e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 63931 # 64218 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_7 - 116 zf-DHHC PF01529.15 174 0.0018 10.7 4.5 1 1 1.2e-05 0.0012 11.2 3.1 88 151 32 108 30 113 0.77 # 3887 # 4234 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_18 - 314 HTH_7 PF02796.10 45 0.00047 13.0 0.0 1 1 1.1e-05 0.0011 11.8 0.0 14 36 284 306 277 313 0.86 # 13494 # 14435 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_20 - 84 HTH_19 PF12844.2 64 8.4e-05 15.6 0.0 1 1 1.2e-06 0.00012 15.1 0.0 7 53 9 56 5 67 0.87 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_20 - 84 DUF1870 PF08965.5 118 0.00031 13.4 1.2 1 1 3.7e-06 0.0004 13.1 1.2 1 75 1 78 1 81 0.69 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_72 - 96 HTH_29 PF13551.1 112 0.00016 14.9 0.0 1 1 2.1e-06 0.00023 14.3 0.0 8 36 33 60 27 76 0.79 # 63931 # 64218 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_15 - 283 DNA_pol_A_exo1 PF01612.15 176 1.3e-05 17.7 0.0 1 1 2.7e-07 2.9e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 10596 # 11444 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_59 - 518 G-alpha PF00503.15 389 0.00068 11.3 0.0 1 2 0.054 5.8 -1.6 0.0 234 272 70 113 29 117 0.79 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_59 - 518 G-alpha PF00503.15 389 0.00068 11.3 0.0 2 2 1.9e-05 0.002 9.8 0.0 58 87 225 254 214 323 0.84 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 57 UBA PF00627.26 37 0.00025 13.9 0.1 1 2 0.036 3.9 0.6 0.0 6 16 4 14 1 20 0.79 # 14497 # 14667 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 57 UBA PF00627.26 37 0.00025 13.9 0.1 2 2 1.5e-05 0.0016 11.4 0.0 6 22 24 40 21 40 0.86 # 14497 # 14667 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 4_1 - 244 DDE_Tnp_IS66 PF03050.9 271 3.1e-12 39.2 0.6 1 1 4.1e-14 4.4e-12 38.7 0.6 5 132 19 153 15 179 0.87 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_50 - 195 DNA_pol3_delta PF06144.8 172 2.2e-06 20.3 0.0 1 1 3e-08 3.2e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 43550 # 44134 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_26 - 777 TrwB_AAD_bind PF10412.4 386 2.5e-06 19.3 0.2 1 2 9.5e-05 0.01 7.4 0.0 11 32 132 153 126 157 0.84 # 20069 # 22399 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 777 TrwB_AAD_bind PF10412.4 386 2.5e-06 19.3 0.2 2 2 3.1e-05 0.0033 9.0 0.1 247 332 440 525 427 554 0.88 # 20069 # 22399 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 215 TIGR01968 TIGR01968 261 8.3e-05 14.7 2.1 1 2 8.1e-06 0.00043 12.3 0.8 3 50 3 44 1 49 0.80 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_5 - 215 TIGR01968 TIGR01968 261 8.3e-05 14.7 2.1 2 2 0.017 0.9 1.5 0.0 101 140 63 102 49 123 0.75 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_7 - 327 TIGR01968 TIGR01968 261 0.00047 12.2 1.5 1 1 3.5e-05 0.0019 10.2 1.4 46 128 63 155 60 215 0.74 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_47 - 383 AAA_18 PF13238.1 129 1.6e-05 18.2 0.0 1 1 6e-07 3.2e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_59 - 518 AAA_18 PF13238.1 129 0.00035 13.9 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_9 - 425 IMS_HHH PF11798.3 32 3.3e-08 26.3 0.2 1 1 9.1e-10 9.7e-08 24.9 0.2 3 32 172 201 170 201 0.93 # 5944 # 7218 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 2_15 - 283 TIGR01406 TIGR01406 231 3.3e-17 55.5 0.0 1 1 5.2e-19 5.6e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 10596 # 11444 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_47 - 383 DUF87 PF01935.12 229 0.00066 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 4_1 - 244 HTH_28 PF13518.1 52 6.5e-05 16.0 1.1 1 1 5.1e-06 0.00027 13.9 1.1 22 36 49 63 22 64 0.76 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_72 - 96 HTH_28 PF13518.1 52 0.00016 14.7 0.0 1 1 8.7e-06 0.00047 13.2 0.0 9 38 33 62 26 75 0.86 # 63931 # 64218 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_15 - 283 TIGR01298 TIGR01298 200 6.4e-07 22.0 1.0 1 1 5.7e-08 6.1e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 10596 # 11444 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_20 - 84 HTH_31 PF13560.1 64 6.8e-07 22.5 2.0 1 2 1e-08 1.1e-06 21.9 1.2 3 43 3 43 2 57 0.86 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_20 - 84 HTH_31 PF13560.1 64 6.8e-07 22.5 2.0 2 2 0.1 11 -0.6 0.0 17 34 65 72 44 82 0.58 # 14698 # 14949 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_59 - 518 T2SE PF00437.15 272 2.6e-41 134.3 0.1 1 1 9.6e-43 5.1e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_47 - 383 T2SE PF00437.15 272 8.6e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_7 - 327 StbA PF06406.6 318 1.3e-156 513.3 1.2 1 1 1.4e-158 1.5e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 4553 # 5533 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_47 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 1 2 4.7e-06 0.00025 14.9 0.0 3 47 161 208 161 251 0.76 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_47 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 2 2 0.086 4.6 1.1 0.1 24 113 332 363 274 374 0.60 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_59 - 518 AAA_17 PF13207.1 121 2.5e-05 18.1 0.2 1 1 2.1e-06 0.00011 16.0 0.0 1 24 227 255 227 344 0.72 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 2_20 - 98 TIGR02211 TIGR02211 221 0.00013 14.2 0.0 1 1 1.4e-06 0.00015 14.0 0.0 109 167 9 72 2 87 0.80 # 14440 # 14733 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_47 - 383 AAA_25 PF13481.1 194 0.00021 13.7 0.0 1 1 7e-06 0.00038 12.9 0.0 24 58 148 182 124 207 0.78 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_59 - 518 AAA_25 PF13481.1 194 0.0003 13.2 0.1 1 2 8.7e-05 0.0047 9.3 0.0 25 65 217 260 200 270 0.72 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_59 - 518 AAA_25 PF13481.1 194 0.0003 13.2 0.1 2 2 0.039 2.1 0.7 0.0 153 190 297 337 292 340 0.74 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_59 - 518 AAA_14 PF13173.1 128 0.00084 12.3 0.0 1 1 3.7e-05 0.004 10.1 0.0 5 30 228 254 225 286 0.80 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_5 - 215 VirC1 PF07015.6 231 0.00044 12.4 0.0 1 2 0.00073 0.078 5.0 0.0 3 29 3 29 1 36 0.81 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_5 - 215 VirC1 PF07015.6 231 0.00044 12.4 0.0 2 2 0.00052 0.055 5.5 0.0 87 190 77 181 59 194 0.70 # 3100 # 3744 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_72 - 96 HTH_Tnp_ISL3 PF13542.1 52 6.5e-05 15.1 0.0 1 1 9.7e-07 0.0001 14.5 0.0 29 50 38 59 34 60 0.89 # 63931 # 64218 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_47 - 383 RNA_helicase PF00910.17 107 0.0001 15.5 0.0 1 1 1.9e-06 0.0002 14.5 0.0 2 28 161 187 160 205 0.83 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_47 - 383 ATP_bind_1 PF03029.12 238 5e-05 15.9 0.0 1 1 7.2e-07 7.7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 4_1 - 244 DDE_Tnp_IS240 PF13610.1 140 2.6e-53 172.8 0.1 1 1 3.3e-55 3.6e-53 172.3 0.1 4 139 84 221 82 222 0.99 # 196 # 927 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_59 - 518 DAP3 PF10236.4 309 0.00067 11.6 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 2_26 - 403 Zn_Tnp_IS1595 PF12760.2 46 0.038 6.9 7.0 1 2 0.0024 0.26 4.2 0.5 19 28 76 86 67 100 0.76 # 18350 # 19558 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_26 - 403 Zn_Tnp_IS1595 PF12760.2 46 0.038 6.9 7.0 2 2 0.0014 0.15 5.0 0.1 8 32 353 377 349 382 0.84 # 18350 # 19558 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_23 - 101 TIGR01455 TIGR01455 442 2.6e-33 108.0 0.5 1 1 2.9e-35 3.2e-33 107.7 0.5 1 77 6 81 6 83 0.96 # 16678 # 16980 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.578 2_15 - 283 RNase_T PF00929.19 164 3.6e-26 85.4 0.0 1 1 4.3e-28 4.6e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 10596 # 11444 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_38 - 1015 AAA_10 PF12846.2 304 7.9e-30 97.3 0.0 1 1 6.9e-31 1.8e-29 96.0 0.0 8 302 502 897 498 898 0.89 # 33843 # 36887 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.510 1_26 - 777 AAA_10 PF12846.2 304 2.9e-05 16.6 1.0 1 1 3.3e-06 8.7e-05 15.0 1.0 2 287 137 501 136 514 0.62 # 20069 # 22399 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_59 - 518 AAA_10 PF12846.2 304 0.00024 13.6 0.0 1 1 1.7e-05 0.00045 12.7 0.0 4 30 228 256 226 320 0.81 # 53293 # 54846 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_47 - 383 AAA_10 PF12846.2 304 0.00055 12.4 0.0 1 1 4e-05 0.0011 11.4 0.0 2 21 158 177 157 196 0.83 # 40737 # 41885 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 2_24 - 299 Pterin_bind PF00809.17 210 4e-60 195.7 0.0 1 1 9.2e-62 4.9e-60 195.4 0.0 1 209 37 243 37 244 0.98 # 17067 # 17963 # -1 # ID=2_24;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.589 3_7 - 279 Pterin_bind PF00809.17 210 2.7e-58 189.8 0.0 1 1 6e-60 3.2e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 3737 # 4573 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_18 - 314 Yae1_N PF09811.4 39 2.3e-05 16.9 7.2 1 1 3.7e-07 3.9e-05 16.2 7.2 3 26 253 276 252 284 0.94 # 13494 # 14435 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/58dcc083-6721-4365-8b38-65c7eaffe1d7 # Target file: checkm_output/bins/pm1677/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1677/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/58dcc083-6721-4365-8b38-65c7eaffe1d7 checkm_output/bins/pm1677/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:20 2017 # [ok]