# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_51 - 388 KaiC PF06745.8 227 0.001 11.4 0.0 1 1 1.5e-05 0.0018 10.6 0.0 14 59 147 191 137 201 0.76 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_86 - 301 TrkA_N PF02254.13 116 3.3e-05 17.1 0.0 1 1 6.4e-07 7.9e-05 15.9 0.0 1 43 7 49 7 79 0.85 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 2_10 - 562 K_oxygenase PF13434.1 341 4.2e-06 19.0 0.2 1 3 0.0041 0.51 2.3 0.2 187 223 95 129 86 132 0.74 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 K_oxygenase PF13434.1 341 4.2e-06 19.0 0.2 2 3 2.9e-06 0.00036 12.7 0.0 130 231 217 309 200 339 0.79 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 K_oxygenase PF13434.1 341 4.2e-06 19.0 0.2 3 3 0.022 2.7 -0.0 0.0 139 160 345 366 314 376 0.63 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_82 - 363 ABC_tran PF00005.22 137 3e-07 24.0 0.0 1 1 1e-07 6.3e-06 19.8 0.0 8 43 18 97 13 304 0.56 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_51 - 388 ABC_tran PF00005.22 137 0.00017 15.1 0.0 1 1 5.3e-06 0.00033 14.2 0.0 16 33 157 174 149 217 0.83 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_86 - 301 NAD_binding_11 PF14833.1 122 5.9e-38 122.9 0.3 1 2 0.029 3.6 0.9 1.1 8 53 96 141 92 153 0.85 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_86 - 301 NAD_binding_11 PF14833.1 122 5.9e-38 122.9 0.3 2 2 4.7e-40 5.9e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_85 - 254 HTH_AsnC-type PF13404.1 42 0.00062 12.6 0.3 1 1 1.4e-05 0.0018 11.1 0.3 7 42 9 44 8 44 0.94 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_7 - 71 DUF2116 PF09889.4 59 0.002 11.1 5.7 1 1 0.00073 0.09 5.9 5.7 6 35 14 54 12 60 0.75 # 3651 # 3863 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_85 - 254 HTH_DeoR PF08220.7 57 3.4e-20 64.6 1.0 1 1 7.1e-22 8.8e-20 63.3 1.0 1 55 6 60 6 61 0.97 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_80 - 87 HTH_Tnp_Tc3_2 PF01498.13 72 0.0005 13.4 0.0 1 1 5.7e-06 0.00071 12.9 0.0 14 40 26 52 14 64 0.90 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 388 FtsK_SpoIIIE PF01580.13 205 0.00012 14.8 0.0 1 1 1.9e-06 0.00024 13.8 0.0 41 59 155 173 129 184 0.85 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_80 - 87 HTH_38 PF13936.1 44 0.00081 12.2 0.0 1 1 1.6e-05 0.002 11.0 0.0 30 43 40 53 38 54 0.90 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_86 - 301 2-Hacid_dh_C PF02826.14 178 1.7e-06 20.5 0.1 1 1 2.5e-08 3.1e-06 19.6 0.1 36 146 4 118 2 124 0.85 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 2_10 - 562 FAD_oxidored PF12831.2 428 7.4e-07 21.7 3.8 1 2 5.9e-09 7.4e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 FAD_oxidored PF12831.2 428 7.4e-07 21.7 3.8 2 2 0.01 1.2 1.2 0.0 84 120 305 341 261 364 0.71 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_51 - 388 MobB PF03205.9 140 0.00062 12.7 0.0 1 1 1e-05 0.0013 11.7 0.0 4 25 156 177 154 190 0.85 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_85 - 254 MarR PF01047.17 59 4.6e-07 22.8 0.1 1 1 1e-08 1.2e-06 21.4 0.1 7 47 9 49 5 52 0.95 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_86 - 301 TIGR00873 TIGR00873 467 9.7e-09 27.3 0.4 1 1 1e-10 1.3e-08 27.0 0.4 2 213 7 209 6 229 0.79 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_86 - 301 UDPG_MGDP_dh_N PF03721.9 185 8.9e-06 18.4 0.1 1 2 2e-06 0.00025 13.7 0.1 2 39 6 43 5 49 0.93 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_86 - 301 UDPG_MGDP_dh_N PF03721.9 185 8.9e-06 18.4 0.1 2 2 0.0061 0.75 2.3 0.0 107 139 86 117 82 126 0.77 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 2_10 - 562 Pyr_redox_3 PF13738.1 203 1.8e-18 60.5 0.1 1 3 1.5e-06 0.00018 14.8 0.0 164 199 95 130 48 134 0.85 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 Pyr_redox_3 PF13738.1 203 1.8e-18 60.5 0.1 2 3 5.8e-09 7.2e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 Pyr_redox_3 PF13738.1 203 1.8e-18 60.5 0.1 3 3 5.6e-08 6.9e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 NAD_binding_7 PF13241.1 103 4.8e-06 20.0 1.2 1 2 1.9e-05 0.0023 11.4 0.2 9 38 100 129 96 164 0.90 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 NAD_binding_7 PF13241.1 103 4.8e-06 20.0 1.2 2 2 0.00049 0.061 6.9 0.1 8 45 271 314 264 382 0.66 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_15 - 83 HTH_8 PF02954.14 42 1.3e-05 18.0 0.1 1 1 1.8e-07 2.2e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 2_16 - 226 TetR_N PF00440.18 47 4.4e-20 64.4 0.1 1 2 6.9e-21 8.5e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 8317 # 8994 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_16 - 226 TetR_N PF00440.18 47 4.4e-20 64.4 0.1 2 2 0.013 1.6 1.8 0.1 1 16 179 194 179 196 0.91 # 8317 # 8994 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_64 - 1017 AAA_19 PF13245.1 76 0.00062 12.7 0.0 1 1 1.6e-05 0.002 11.1 0.0 14 31 492 508 481 518 0.90 # 40011 # 43061 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 2_6 - 255 rve PF00665.21 120 1.3e-13 44.3 0.0 1 2 0.041 2.5 1.5 0.0 83 102 30 49 7 51 0.90 # 2649 # 3413 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 2_6 - 255 rve PF00665.21 120 1.3e-13 44.3 0.0 2 2 3.4e-14 2.1e-12 40.5 0.0 8 117 73 179 69 182 0.90 # 2649 # 3413 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 8_1 - 199 rve PF00665.21 120 3.1e-12 39.9 0.0 1 1 7.9e-14 4.9e-12 39.3 0.0 9 119 39 146 34 147 0.89 # 53 # 649 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_4 - 102 zf-ribbon_3 PF13248.1 26 5.6e-06 18.7 2.9 1 1 6.5e-08 8.1e-06 18.2 2.9 4 24 2 22 1 24 0.90 # 1890 # 2195 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_85 - 254 Fe_dep_repress PF01325.14 60 1.9e-06 21.0 0.2 1 1 4.1e-08 5.1e-06 19.6 0.1 13 53 10 50 8 55 0.93 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_82 - 363 AAA_23 PF13476.1 202 3.5e-12 40.2 0.0 1 1 7.1e-14 4.4e-12 39.9 0.0 2 53 5 55 4 167 0.89 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_51 - 388 AAA_23 PF13476.1 202 2.5e-06 21.2 0.1 1 1 8.3e-08 5.2e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_2 - 283 TIGR00573 TIGR00573 217 7.3e-13 41.4 0.0 1 1 2.6e-14 3.2e-12 39.3 0.0 12 181 107 274 103 282 0.77 # 488 # 1336 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 3_4 - 102 zf-TFIIB PF13453.1 41 0.0032 9.9 2.9 1 1 0.00025 0.031 6.8 2.9 17 39 12 34 2 36 0.81 # 1890 # 2195 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_86 - 301 F420_oxidored PF03807.12 96 3.9e-06 20.5 0.6 1 1 1e-07 1.2e-05 18.9 0.2 2 78 7 79 6 98 0.82 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_46 - 122 CPSase_L_D3 PF02787.14 123 0.00093 12.2 0.2 1 1 1.2e-05 0.0014 11.6 0.2 50 96 45 91 24 103 0.78 # 24459 # 24824 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.418 1_82 - 363 SMC_N PF02463.14 220 1.3e-15 50.4 0.0 1 2 1.5e-12 9.2e-11 34.5 0.1 1 51 1 47 1 61 0.88 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_82 - 363 SMC_N PF02463.14 220 1.3e-15 50.4 0.0 2 2 2.4e-06 0.00015 14.2 0.0 136 203 273 338 107 345 0.78 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_51 - 388 SMC_N PF02463.14 220 0.0014 11.0 0.0 1 1 4.2e-05 0.0026 10.2 0.0 26 50 154 178 147 195 0.81 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_80 - 87 HTH_Tnp_1 PF01527.15 76 3.2e-05 17.1 0.3 1 1 5.6e-07 6.9e-05 16.0 0.3 4 52 6 59 4 63 0.79 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_71 - 696 TraG-D_C PF12696.2 128 0.00017 14.7 0.1 1 1 2.4e-06 0.00029 13.9 0.1 3 94 437 524 435 556 0.78 # 50771 # 52858 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_82 - 363 AAA_21 PF13304.1 303 1.5e-26 87.1 0.1 1 1 1e-27 1.3e-25 84.1 0.1 1 301 23 336 23 338 0.86 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_85 - 254 Sigma70_r4 PF04545.11 50 0.0052 9.4 4.2 1 1 1.3e-05 0.0016 11.0 0.4 7 39 5 38 5 43 0.90 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_10 - 562 Thi4 PF01946.12 230 0.00033 13.0 0.4 1 1 6.3e-06 0.00079 11.7 0.4 19 70 100 150 95 158 0.88 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_15 - 83 HTH_37 PF13744.1 80 5.3e-05 16.2 0.0 1 1 8.8e-07 0.00011 15.2 0.0 24 54 7 37 4 46 0.89 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_85 - 254 Rrf2 PF02082.15 83 2.3e-06 20.9 0.3 1 1 4.9e-08 6.1e-06 19.6 0.2 17 60 11 54 9 70 0.84 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_85 - 254 HTH_27 PF13463.1 68 9e-05 16.0 0.1 1 1 1.5e-06 0.00018 15.0 0.1 5 49 7 50 5 70 0.88 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_17 - 400 TIGR01394 TIGR01394 594 0.0019 9.3 0.0 1 1 2.2e-05 0.0027 8.8 0.0 408 486 267 343 261 354 0.84 # 9073 # 10272 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_20 - 325 Hydantoinase_A PF01968.13 290 1.4e-07 24.1 3.6 1 2 5.2e-07 6.5e-05 15.3 0.1 67 96 158 186 140 193 0.83 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_20 - 325 Hydantoinase_A PF01968.13 290 1.4e-07 24.1 3.6 2 2 3.1e-05 0.0039 9.5 0.1 212 265 248 301 191 322 0.76 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 2_14 - 152 MerR_1 PF13411.1 69 4.3e-20 64.5 0.0 1 1 1.3e-21 7.8e-20 63.7 0.0 2 67 9 75 8 77 0.96 # 7450 # 7905 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 2_9 - 122 MerR_1 PF13411.1 69 6.3e-13 41.6 0.0 1 1 1.5e-14 9.2e-13 41.1 0.0 1 68 4 72 4 73 0.97 # 4162 # 4527 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.672 1_51 - 388 AAA_16 PF13191.1 185 0.0011 12.2 0.0 1 1 1.8e-05 0.0022 11.2 0.0 26 50 154 178 140 211 0.85 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 388 AAA_22 PF13401.1 131 3.6e-06 20.4 0.0 1 1 1.4e-07 8.8e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_64 - 1017 AAA_22 PF13401.1 131 0.00031 14.1 0.0 1 1 1.7e-05 0.001 12.4 0.0 8 70 492 558 486 594 0.69 # 40011 # 43061 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_85 - 254 DUF977 PF06163.6 127 0.00022 14.2 0.3 1 1 4.9e-06 0.00061 12.8 0.3 15 57 8 50 4 65 0.87 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_32 - 287 Methyltransf_27 PF13708.1 194 2.2e-69 226.1 0.0 1 1 3.1e-71 3.8e-69 225.3 0.0 2 194 89 282 88 282 0.98 # 17959 # 18819 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_51 - 388 AAA_29 PF13555.1 62 1.1e-05 18.1 0.1 1 1 4.4e-07 2.7e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_82 - 363 AAA_29 PF13555.1 62 0.00051 12.8 0.0 1 1 1.5e-05 0.00094 12.0 0.0 17 47 16 45 2 53 0.70 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 2_10 - 562 Pyr_redox PF00070.22 80 1.2e-19 63.8 5.4 1 2 1.2e-06 0.00015 15.4 1.5 2 31 101 130 100 132 0.95 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 Pyr_redox PF00070.22 80 1.2e-19 63.8 5.4 2 2 3.2e-17 3.9e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 HI0933_like PF03486.9 409 5.4e-09 28.1 5.0 1 2 4.3e-07 5.3e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 HI0933_like PF03486.9 409 5.4e-09 28.1 5.0 2 2 1.7e-06 0.00021 13.0 0.0 83 163 286 362 281 379 0.85 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_80 - 87 HTH_32 PF13565.1 77 5.8e-07 23.5 0.0 1 1 1.4e-08 9e-07 22.9 0.0 26 76 5 50 2 51 0.83 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 2_6 - 255 HTH_32 PF13565.1 77 0.00024 15.1 0.2 1 1 1.3e-05 0.00083 13.4 0.2 37 76 15 50 6 51 0.83 # 2649 # 3413 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_85 - 254 GntR PF00392.16 64 4.3e-07 22.6 0.5 1 1 8.1e-09 1e-06 21.4 0.5 26 59 21 54 9 59 0.92 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_15 - 83 HTH_3 PF01381.17 55 2.3e-09 30.2 0.1 1 1 9.3e-11 3.9e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_29 - 89 HTH_3 PF01381.17 55 1.4e-06 21.4 0.0 1 1 4.2e-08 1.7e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_24 - 160 HTH_3 PF01381.17 55 0.00018 14.6 0.1 1 2 0.0022 0.09 5.9 0.0 2 20 15 33 14 37 0.91 # 13187 # 13666 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 160 HTH_3 PF01381.17 55 0.00018 14.6 0.1 2 2 0.0016 0.068 6.3 0.0 1 23 96 118 96 120 0.89 # 13187 # 13666 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_80 - 87 HTH_23 PF13384.1 50 3.2e-06 19.9 2.2 1 2 0.019 0.4 3.7 0.1 7 27 11 35 7 36 0.71 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_80 - 87 HTH_23 PF13384.1 50 3.2e-06 19.9 2.2 2 2 3.2e-06 6.7e-05 15.8 0.4 28 42 41 55 40 63 0.87 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_29 - 89 HTH_23 PF13384.1 50 8.7e-06 18.6 0.0 1 1 6.4e-07 1.3e-05 18.0 0.0 16 39 38 64 33 68 0.83 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_85 - 254 HTH_23 PF13384.1 50 3e-05 16.8 0.1 1 1 3.8e-06 7.8e-05 15.5 0.1 4 45 4 47 1 50 0.86 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 8_1 - 199 HTH_23 PF13384.1 50 4.1e-05 16.4 0.3 1 1 9e-06 0.00019 14.3 0.1 28 42 5 19 4 27 0.87 # 53 # 649 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_15 - 83 HTH_23 PF13384.1 50 5.5e-05 16.0 0.0 1 1 5.2e-06 0.00011 15.1 0.0 15 34 10 31 6 40 0.81 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 2_16 - 226 HTH_23 PF13384.1 50 0.0011 11.9 0.2 1 1 0.00029 0.006 9.5 0.0 10 35 22 51 14 64 0.75 # 8317 # 8994 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_15 - 83 HTH_19 PF12844.2 64 4.9e-08 26.2 0.0 1 1 1.2e-09 7.1e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_29 - 89 HTH_19 PF12844.2 64 0.0001 15.5 0.0 1 1 2.3e-06 0.00014 15.1 0.0 4 39 33 69 30 73 0.85 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_10 - 562 GIDA PF01134.17 392 3.2e-06 19.4 5.3 1 2 2.6e-08 3.2e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 GIDA PF01134.17 392 3.2e-06 19.4 5.3 2 2 0.01 1.3 1.0 0.3 349 385 390 426 376 430 0.79 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 XdhC_C PF13478.1 136 0.001 12.6 1.0 1 2 0.08 10 -0.3 0.1 1 29 101 129 101 163 0.86 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 XdhC_C PF13478.1 136 0.001 12.6 1.0 2 2 6.9e-05 0.0085 9.6 0.1 1 66 273 351 273 371 0.64 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 NAD_binding_8 PF13450.1 68 8.5e-05 15.8 1.2 1 1 6.9e-07 8.5e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_6 - 255 DDE_Tnp_IS66 PF03050.9 271 1.4e-09 30.7 0.4 1 1 5e-11 2.1e-09 30.2 0.4 11 133 16 144 8 183 0.86 # 2649 # 3413 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 8_1 - 199 DDE_Tnp_IS66 PF03050.9 271 7.7e-08 25.0 0.1 1 1 2.4e-09 1e-07 24.6 0.1 33 132 2 108 1 139 0.87 # 53 # 649 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_80 - 87 DDE_Tnp_IS66 PF03050.9 271 2.3e-06 20.2 0.0 1 1 5.6e-08 2.3e-06 20.2 0.0 5 55 10 60 6 78 0.87 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 562 Trp_halogenase PF04820.9 454 0.0055 8.5 3.3 1 1 8.1e-05 0.01 7.6 3.3 1 47 100 143 100 151 0.76 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_71 - 696 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.6 0.9 1 3 1.7e-05 0.0021 9.8 0.0 16 36 134 154 125 158 0.88 # 50771 # 52858 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_71 - 696 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.6 0.9 2 3 9.3e-05 0.012 7.4 0.1 93 140 235 281 229 303 0.80 # 50771 # 52858 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_71 - 696 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.6 0.9 3 3 0.083 10 -2.3 0.0 293 323 482 512 405 546 0.58 # 50771 # 52858 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_64 - 1017 AAA_18 PF13238.1 129 0.0001 15.9 1.2 1 1 3.7e-06 0.00046 13.7 0.0 2 19 492 509 492 568 0.77 # 40011 # 43061 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 363 TIGR00611 TIGR00611 365 1.3e-08 27.2 0.0 1 1 1.5e-10 1.8e-08 26.7 0.0 3 49 2 47 1 53 0.91 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_78 - 282 IMS_HHH PF11798.3 32 0.00014 15.1 0.1 1 1 3.3e-06 0.0004 13.7 0.1 14 32 194 212 183 212 0.85 # 57291 # 58136 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.598 1_2 - 283 TIGR01406 TIGR01406 231 1e-13 44.3 0.0 1 1 1.7e-15 2.1e-13 43.3 0.0 4 128 106 223 104 281 0.73 # 488 # 1336 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 1_51 - 388 DUF87 PF01935.12 229 0.00011 15.2 0.0 1 1 1.8e-06 0.00023 14.2 0.0 28 45 157 174 155 188 0.89 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_80 - 87 HTH_28 PF13518.1 52 1.9e-05 17.9 1.7 1 1 3.2e-06 8e-05 15.9 1.7 22 36 40 54 12 55 0.72 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_85 - 254 HTH_28 PF13518.1 52 4.9e-05 16.5 0.0 1 1 4.7e-06 0.00012 15.3 0.0 4 41 9 48 6 53 0.89 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_29 - 89 HTH_28 PF13518.1 52 7.7e-05 15.9 0.0 1 1 4.3e-06 0.00011 15.4 0.0 7 34 34 64 33 68 0.82 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 8_1 - 199 HTH_28 PF13518.1 52 9.7e-05 15.6 0.3 1 1 1.2e-05 0.00029 14.1 0.3 23 36 5 18 4 19 0.92 # 53 # 649 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_15 - 83 HTH_28 PF13518.1 52 0.00052 13.3 0.1 1 1 4.5e-05 0.0011 12.2 0.1 8 29 8 31 6 35 0.78 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 2_16 - 226 HTH_Tnp_1_2 PF13022.1 142 0.00098 12.1 0.0 1 1 1.2e-05 0.0014 11.6 0.0 22 77 24 73 5 79 0.76 # 8317 # 8994 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_14 - 152 MerR-DNA-bind PF09278.6 65 4.1e-21 68.4 1.4 1 1 1.2e-22 7.6e-21 67.6 1.1 1 65 51 113 51 113 0.95 # 7450 # 7905 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 2_9 - 122 MerR-DNA-bind PF09278.6 65 0.00023 14.8 6.6 1 1 6.7e-06 0.00041 14.0 6.6 1 64 47 108 47 109 0.80 # 4162 # 4527 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.672 1_85 - 254 HTH_24 PF13412.1 48 4.4e-07 22.5 0.4 1 1 9.4e-09 1.2e-06 21.1 0.2 5 47 7 49 5 50 0.95 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_2 - 283 TIGR01298 TIGR01298 200 4.4e-05 16.2 1.0 1 1 2.2e-06 0.00027 13.6 1.0 105 189 179 267 92 274 0.71 # 488 # 1336 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 2_10 - 562 TIGR01292 TIGR01292 300 1.6e-19 62.7 3.5 1 2 4.9e-06 0.00061 11.5 1.2 2 39 100 137 99 143 0.91 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 TIGR01292 TIGR01292 300 1.6e-19 62.7 3.5 2 2 3.9e-18 4.9e-16 51.2 0.0 143 296 272 425 214 427 0.82 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_86 - 301 NAD_binding_2 PF03446.10 163 6.8e-41 133.0 3.6 1 1 8e-43 9.9e-41 132.5 3.6 2 162 5 166 4 167 0.96 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_51 - 388 Miro PF08477.8 119 0.0012 12.6 0.0 1 1 2.1e-05 0.0026 11.5 0.0 4 28 157 186 156 220 0.72 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_15 - 83 HTH_31 PF13560.1 64 2.4e-09 30.6 0.9 1 1 7.4e-11 3.1e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 8034 # 8282 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_24 - 160 HTH_31 PF13560.1 64 8.4e-07 22.4 1.2 1 2 0.0035 0.14 5.6 0.0 6 33 14 41 12 48 0.88 # 13187 # 13666 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 160 HTH_31 PF13560.1 64 8.4e-07 22.4 1.2 2 2 2.8e-06 0.00011 15.6 0.3 4 39 94 129 91 135 0.88 # 13187 # 13666 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_29 - 89 HTH_31 PF13560.1 64 2.5e-06 20.9 0.0 1 1 8.4e-08 3.5e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_64 - 1017 DUF2075 PF09848.4 352 0.00044 12.5 0.0 1 1 1.1e-05 0.0014 10.8 0.0 5 22 492 509 489 533 0.86 # 40011 # 43061 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_51 - 388 T2SE PF00437.15 272 3.5e-23 75.0 0.0 1 1 4.6e-25 5.7e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 325 StbA PF06406.6 318 4e-157 515.2 0.2 1 1 3.7e-159 4.5e-157 515.1 0.2 1 318 1 322 1 322 0.99 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_51 - 388 NACHT PF05729.7 166 0.00042 13.2 0.0 1 1 6.6e-06 0.00082 12.3 0.0 4 29 156 181 154 188 0.83 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_89 - 254 AP_endonuc_2 PF01261.19 213 3.8e-35 114.3 0.4 1 1 3.6e-37 4.4e-35 114.1 0.4 1 212 21 218 21 219 0.96 # 66853 # 67614 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_64 - 1017 AAA_17 PF13207.1 121 5.7e-05 17.2 0.1 1 1 3.9e-06 0.00048 14.2 0.0 3 27 492 522 492 582 0.70 # 40011 # 43061 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 3_4 - 102 DZR PF12773.2 50 2.4e-05 17.3 0.8 1 1 2.8e-07 3.5e-05 16.8 0.8 1 23 3 25 3 42 0.86 # 1890 # 2195 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 2_10 - 562 FAD_binding_2 PF00890.19 417 1.2e-06 20.8 5.3 1 3 9.5e-09 1.2e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 FAD_binding_2 PF00890.19 417 1.2e-06 20.8 5.3 2 3 0.034 4.2 -0.8 0.2 142 204 311 366 286 382 0.67 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 FAD_binding_2 PF00890.19 417 1.2e-06 20.8 5.3 3 3 0.0019 0.23 3.4 0.1 373 402 374 405 368 419 0.86 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_51 - 388 AAA_25 PF13481.1 194 7.2e-06 18.7 0.0 1 1 2.6e-07 1.6e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_82 - 363 AAA_25 PF13481.1 194 0.00079 12.1 0.0 1 1 2.5e-05 0.0016 11.1 0.0 31 95 19 86 8 121 0.76 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_39 - 147 RepA_N PF06970.6 76 0.0011 12.1 0.0 1 1 1.7e-05 0.0021 11.1 0.0 15 44 56 85 54 90 0.92 # 21272 # 21712 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_82 - 363 AAA_15 PF13175.1 415 2.9e-11 36.2 0.0 1 2 4e-08 5e-06 18.9 0.1 1 44 2 43 2 68 0.87 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_82 - 363 AAA_15 PF13175.1 415 2.9e-11 36.2 0.0 2 2 4.9e-07 6.1e-05 15.3 0.0 372 414 296 336 274 337 0.93 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_20 - 325 Hydant_A_N PF05378.8 176 0.0012 11.5 3.9 1 4 0.08 9.9 -1.2 0.0 1 19 2 20 2 48 0.82 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_20 - 325 Hydant_A_N PF05378.8 176 0.0012 11.5 3.9 2 4 0.049 6.1 -0.5 0.0 108 154 38 86 15 103 0.67 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_20 - 325 Hydant_A_N PF05378.8 176 0.0012 11.5 3.9 3 4 0.057 7 -0.7 0.0 95 129 113 147 89 153 0.76 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_20 - 325 Hydant_A_N PF05378.8 176 0.0012 11.5 3.9 4 4 3.6e-05 0.0045 9.7 0.2 2 51 170 217 169 226 0.82 # 10589 # 11563 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_29 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00045 12.6 0.0 1 1 5e-06 0.00062 12.2 0.0 19 49 35 64 33 65 0.91 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_14 - 152 MerR PF00376.18 38 1.2e-14 46.8 0.1 1 1 5.9e-16 2.5e-14 45.9 0.1 1 38 9 46 9 46 0.99 # 7450 # 7905 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 2_9 - 122 MerR PF00376.18 38 4.5e-07 22.6 0.1 1 1 1.7e-08 6.9e-07 22.0 0.1 2 38 6 42 5 42 0.89 # 4162 # 4527 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.672 1_85 - 254 MerR PF00376.18 38 0.00098 11.9 0.3 1 1 0.00019 0.0077 9.1 0.1 1 18 21 38 21 53 0.80 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_29 - 89 CENP-B_N PF04218.8 53 0.0017 11.0 0.0 1 1 1.9e-05 0.0024 10.6 0.0 24 49 44 69 34 72 0.88 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_85 - 254 PaaX PF07848.7 70 3.7e-06 20.1 0.2 1 1 5.5e-08 6.9e-06 19.3 0.2 15 68 14 64 10 66 0.85 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_51 - 388 Ribosomal_S5 PF00333.15 67 3.8e-05 16.7 0.1 1 2 0.00091 0.11 5.5 0.0 26 45 84 103 76 114 0.83 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 388 Ribosomal_S5 PF00333.15 67 3.8e-05 16.7 0.1 2 2 0.00012 0.014 8.4 0.0 21 54 242 274 230 278 0.91 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_80 - 87 Arg_repressor PF01316.16 70 0.00089 12.1 0.0 1 1 1e-05 0.0013 11.6 0.0 23 46 29 52 26 55 0.92 # 59187 # 59447 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 388 RNA_helicase PF00910.17 107 0.0014 12.1 0.0 1 1 2.5e-05 0.0031 10.9 0.0 3 26 157 180 156 197 0.81 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 562 AlaDh_PNT_C PF01262.16 168 1.1e-06 21.6 2.3 1 2 7.8e-06 0.00049 12.9 0.3 16 50 94 128 80 131 0.87 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 AlaDh_PNT_C PF01262.16 168 1.1e-06 21.6 2.3 2 2 0.00023 0.014 8.1 0.1 19 60 269 310 260 341 0.84 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_86 - 301 AlaDh_PNT_C PF01262.16 168 0.00021 14.1 1.6 1 2 1.1e-05 0.00069 12.4 0.1 21 65 5 49 2 62 0.89 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 1_86 - 301 AlaDh_PNT_C PF01262.16 168 0.00021 14.1 1.6 2 2 0.056 3.5 0.4 0.2 13 42 84 113 72 117 0.84 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 5_2 - 168 DDE_Tnp_IS1 PF03400.8 131 5.1e-80 259.2 1.0 1 1 4.8e-82 6e-80 259.0 1.0 1 131 37 167 37 167 0.99 # 241 # 744 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.556 1_86 - 301 3HCDH_N PF02737.13 180 3.4e-07 23.3 0.8 1 1 2.4e-08 1.5e-06 21.2 0.8 1 40 6 45 6 116 0.92 # 64056 # 64958 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.639 2_10 - 562 3HCDH_N PF02737.13 180 0.02 7.7 6.6 1 2 0.017 1.1 2.1 2.8 1 30 100 129 100 133 0.93 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 3HCDH_N PF02737.13 180 0.02 7.7 6.6 2 2 0.0006 0.037 6.9 0.1 2 36 273 307 272 359 0.75 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_29 - 89 Phage_CII PF05269.6 91 0.00089 12.5 0.0 1 1 9.2e-06 0.0011 12.2 0.0 17 45 36 64 32 81 0.83 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_10 - 562 Glyco_transf_4 PF13439.1 177 0.00018 14.4 0.5 1 1 2.7e-06 0.00033 13.6 0.1 13 39 277 303 274 335 0.84 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_51 - 388 ATP_bind_1 PF03029.12 238 0.001 11.8 0.0 1 1 1.3e-05 0.0016 11.2 0.0 1 25 157 181 157 191 0.84 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_6 - 255 DDE_Tnp_IS240 PF13610.1 140 1.3e-53 174.0 0.0 1 1 3.9e-55 1.6e-53 173.6 0.0 3 139 73 211 71 212 0.98 # 2649 # 3413 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 8_1 - 199 DDE_Tnp_IS240 PF13610.1 140 6.1e-53 171.8 0.0 1 1 1.9e-54 8e-53 171.4 0.0 4 139 39 176 37 177 0.99 # 53 # 649 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_55 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00032 13.9 0.0 1 1 8.4e-06 0.00035 13.8 0.0 29 64 18 52 5 58 0.83 # 33902 # 34099 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_29 - 89 HTH_26 PF13443.1 63 0.00033 14.1 0.0 1 1 3.6e-06 0.00045 13.7 0.0 11 47 43 78 33 82 0.90 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_82 - 363 TIGR00634 TIGR00634 563 1.4e-05 17.1 0.0 1 1 1.6e-07 2e-05 16.5 0.0 1 46 1 45 1 52 0.93 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_85 - 254 HTH_11 PF08279.7 55 1.2e-12 40.6 0.3 1 1 1.7e-14 2.1e-12 39.8 0.3 1 53 6 55 6 57 0.89 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_85 - 254 MarR_2 PF12802.2 62 1.9e-07 23.9 2.4 1 2 3.5e-09 4.4e-07 22.8 0.7 8 54 8 52 5 65 0.92 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_85 - 254 MarR_2 PF12802.2 62 1.9e-07 23.9 2.4 2 2 0.087 11 -0.9 0.0 26 44 227 245 219 248 0.73 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 102 zinc_ribbon_2 PF13240.1 23 0.00079 12.2 3.1 1 1 1.2e-05 0.0015 11.3 3.1 2 23 3 24 2 24 0.93 # 1890 # 2195 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_85 - 254 HTH_5 PF01022.15 47 2.6e-05 17.1 0.4 1 1 9.3e-07 0.00012 15.0 0.2 7 45 10 49 8 51 0.90 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_85 - 254 TrmB PF01978.14 68 2.9e-05 17.0 0.2 1 1 4.7e-07 5.8e-05 16.0 0.2 15 54 11 51 10 62 0.90 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_10 - 562 Pyr_redox_2 PF07992.9 201 8.7e-43 139.7 0.0 1 1 1.6e-44 2e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_82 - 363 DUF2813 PF11398.3 373 7.3e-05 15.1 0.2 1 1 1.2e-06 0.00014 14.2 0.0 4 48 3 47 1 58 0.89 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_29 - 89 HTH_Crp_2 PF13545.1 76 0.00056 12.9 0.0 1 1 6.6e-06 0.00082 12.4 0.0 26 50 40 64 32 65 0.88 # 15486 # 15752 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_85 - 254 HTH_Mga PF08280.6 59 0.00017 14.6 0.0 1 1 3.1e-06 0.00039 13.4 0.0 4 44 4 44 3 50 0.94 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_10 - 562 DAO PF01266.19 358 8.2e-12 37.8 7.5 1 2 1.9e-08 2.3e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_10 - 562 DAO PF01266.19 358 8.2e-12 37.8 7.5 2 2 7.7e-09 9.5e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 4545 # 6230 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_79 - 292 Seryl_tRNA_N PF02403.17 108 0.011 9.0 13.5 1 4 0.02 2.5 1.4 0.1 57 104 11 59 2 63 0.69 # 58325 # 59200 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.501 1_79 - 292 Seryl_tRNA_N PF02403.17 108 0.011 9.0 13.5 2 4 0.0053 0.66 3.3 0.8 39 96 39 107 17 111 0.52 # 58325 # 59200 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.501 1_79 - 292 Seryl_tRNA_N PF02403.17 108 0.011 9.0 13.5 3 4 0.00048 0.06 6.6 0.1 27 59 90 122 75 144 0.84 # 58325 # 59200 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.501 1_79 - 292 Seryl_tRNA_N PF02403.17 108 0.011 9.0 13.5 4 4 0.00026 0.033 7.5 1.6 17 107 162 251 155 252 0.76 # 58325 # 59200 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.501 1_2 - 283 RNase_T PF00929.19 164 5.4e-22 72.0 0.0 1 1 5.6e-24 6.9e-22 71.7 0.0 1 163 105 262 105 263 0.94 # 488 # 1336 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 1_85 - 254 DUF1670 PF07900.6 220 0.00013 14.4 0.1 1 1 1.5e-06 0.00019 13.9 0.1 101 203 15 117 7 124 0.79 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_64 - 1017 AAA_10 PF12846.2 304 1.1e-40 133.1 0.0 1 1 5.5e-42 2.3e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 40011 # 43061 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_71 - 696 AAA_10 PF12846.2 304 7.8e-10 31.8 0.0 1 1 2.8e-11 1.2e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 50771 # 52858 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_51 - 388 AAA_10 PF12846.2 304 1.8e-06 20.8 0.0 1 1 2.5e-07 1e-05 18.3 0.0 3 27 154 178 152 196 0.74 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_85 - 254 HTH_20 PF12840.2 61 7.2e-07 22.2 1.5 1 1 2.7e-08 1.7e-06 21.0 0.1 14 57 9 52 7 55 0.93 # 63034 # 63795 # -1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_16 - 226 HTH_20 PF12840.2 61 0.0003 13.8 0.1 1 1 3.6e-05 0.0022 11.0 0.0 21 46 30 55 18 63 0.85 # 8317 # 8994 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 3_4 - 102 DNA_RNApol_7kD PF03604.8 32 0.00065 12.4 3.3 1 1 1.1e-05 0.0014 11.3 3.3 2 25 2 22 2 25 0.93 # 1890 # 2195 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_4 - 102 UPF0547 PF10571.4 26 0.00058 12.8 8.5 1 1 1.5e-05 0.0018 11.2 8.5 3 24 3 24 2 24 0.86 # 1890 # 2195 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_82 - 363 AAA_13 PF13166.1 712 0.00071 11.3 0.0 1 1 1.6e-05 0.00099 10.8 0.0 14 36 19 41 7 54 0.79 # 60420 # 61508 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 1_79 - 292 AAA_13 PF13166.1 712 0.0011 10.7 18.3 1 2 4.3e-05 0.0026 9.4 3.4 365 471 17 125 5 133 0.60 # 58325 # 59200 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.501 1_79 - 292 AAA_13 PF13166.1 712 0.0011 10.7 18.3 2 2 0.00021 0.013 7.1 7.2 322 439 158 285 138 291 0.75 # 58325 # 59200 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.501 2_3 - 280 Pterin_bind PF00809.17 210 3.2e-58 189.7 0.0 1 1 3e-60 3.8e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 675 # 1514 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_42 - 145 SSB PF00436.20 104 4.1e-32 103.4 0.2 1 1 3.8e-34 4.7e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 22488 # 22922 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_51 - 388 GTP_EFTU PF00009.22 188 0.0013 11.4 0.0 1 1 2e-05 0.0024 10.5 0.0 8 34 157 183 155 195 0.87 # 28683 # 29846 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7db47155-2077-43cd-8e20-7a8f19377104 # Target file: checkm_output/bins/pm1676/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1676/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7db47155-2077-43cd-8e20-7a8f19377104 checkm_output/bins/pm1676/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:18 2017 # [ok]