# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 308 Cons_hypoth95 PF03602.10 183 1.9e-07 20.3 0.0 1 2 1.2e-07 1.2e-06 17.7 0.0 93 140 14 59 3 101 0.78 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Cons_hypoth95 PF03602.10 183 1.9e-07 20.3 0.0 2 2 0.035 0.35 -0.1 0.0 44 57 216 229 207 284 0.72 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_9 - 194 HTH_IclR PF09339.5 52 2.6e-05 13.5 0.0 1 1 2.2e-05 0.00022 10.6 0.0 9 38 111 178 107 180 0.65 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_6 - 308 TIGR00095 TIGR00095 194 7.7e-06 15.0 0.0 1 1 1.5e-06 1.5e-05 14.1 0.0 114 149 24 62 5 105 0.66 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 FtsK_SpoIIIE PF01580.13 205 1e-07 21.2 0.0 1 2 1.6e-07 1.6e-06 17.4 0.0 29 79 164 220 140 232 0.66 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 FtsK_SpoIIIE PF01580.13 205 1e-07 21.2 0.0 2 2 0.043 0.43 -0.4 0.0 180 204 555 579 511 580 0.82 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 194 DUF1492 PF07374.6 100 1.3e-06 18.2 0.5 1 2 0.099 0.99 -0.7 0.1 40 41 54 55 25 85 0.49 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_9 - 194 DUF1492 PF07374.6 100 1.3e-06 18.2 0.5 2 2 4.8e-07 4.8e-06 16.4 0.1 57 96 143 183 104 186 0.77 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_6 - 308 MethyltransfD12 PF02086.10 260 1.3e-05 14.4 0.1 1 2 1.9e-05 0.00019 10.5 0.0 163 220 18 73 2 110 0.64 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 MethyltransfD12 PF02086.10 260 1.3e-05 14.4 0.1 2 2 0.011 0.11 1.5 0.1 17 56 212 250 201 301 0.68 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_26 PF13659.1 117 6.1e-14 41.8 0.0 1 2 3e-10 3e-09 26.7 0.0 50 114 13 85 6 88 0.75 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_26 PF13659.1 117 6.1e-14 41.8 0.0 2 2 4.8e-06 4.8e-05 13.1 0.0 1 39 215 252 215 292 0.86 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_9 - 194 HTH_Tnp_1 PF01527.15 76 8e-06 15.5 0.0 1 1 3.3e-06 3.3e-05 13.6 0.0 10 46 145 181 143 185 0.93 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_6 - 308 UPF0020 PF01170.13 180 3.7e-06 16.2 0.1 1 2 0.00023 0.0023 7.2 0.0 99 118 25 45 8 110 0.69 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 UPF0020 PF01170.13 180 3.7e-06 16.2 0.1 2 2 0.00037 0.0037 6.5 0.0 23 39 209 225 202 282 0.91 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_4 - 70 HTH_37 PF13744.1 80 5.4e-08 22.3 0.0 1 1 5.8e-09 5.8e-08 22.2 0.0 16 75 7 65 1 66 0.89 # 4315 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 308 N6_N4_Mtase PF01555.13 231 3e-56 180.1 0.1 1 1 4.8e-57 4.8e-56 179.4 0.1 1 227 34 250 34 254 0.93 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_4 - 70 HTH_25 PF13413.1 62 8e-06 15.2 0.1 1 1 1.8e-06 1.8e-05 14.1 0.1 2 34 14 46 13 68 0.92 # 4315 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.319 1_2 - 691 AAA_22 PF13401.1 131 5.3e-06 16.3 0.0 1 1 4.4e-06 4.4e-05 13.3 0.0 5 45 176 219 174 250 0.79 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_4 - 70 HTH_3 PF01381.17 55 1.6e-19 59.3 0.3 1 1 1.8e-20 1.8e-19 59.1 0.3 1 55 14 68 14 68 0.98 # 4315 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 194 HTH_7 PF02796.10 45 3e-05 13.6 0.7 1 1 8.6e-06 8.6e-05 12.1 0.1 2 44 142 181 141 182 0.83 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 70 HTH_19 PF12844.2 64 9e-18 53.9 0.3 1 1 1e-18 1e-17 53.7 0.3 1 59 11 69 11 69 0.99 # 4315 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 308 RsmJ PF04378.8 245 6.7e-06 14.8 0.0 1 1 1.2e-06 1.2e-05 14.0 0.0 99 150 9 58 4 64 0.84 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_31 PF13847.1 152 1.7e-10 30.3 1.2 1 3 2.6e-07 2.6e-06 16.8 0.0 55 112 14 88 3 145 0.79 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_31 PF13847.1 152 1.7e-10 30.3 1.2 2 3 0.00067 0.0067 5.7 0.0 3 44 214 252 212 260 0.76 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_31 PF13847.1 152 1.7e-10 30.3 1.2 3 3 0.00085 0.0085 5.3 0.2 35 69 261 296 256 303 0.87 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 TrwB_AAD_bind PF10412.4 386 5.4e-10 28.0 0.0 1 2 2e-08 2e-07 19.5 0.0 10 58 170 226 162 232 0.88 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 TrwB_AAD_bind PF10412.4 386 5.4e-10 28.0 0.0 2 2 0.00025 0.0025 6.0 0.0 261 321 557 609 554 620 0.85 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 308 Methyltransf_15 PF09445.5 164 3.3e-05 13.1 0.0 1 2 0.00015 0.0015 7.7 0.0 48 80 12 43 6 50 0.87 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_15 PF09445.5 164 3.3e-05 13.1 0.0 2 2 0.0043 0.043 3.0 0.0 3 37 217 251 215 257 0.70 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 691 DUF87 PF01935.12 229 8.5e-28 87.3 0.0 1 2 4.5e-26 4.5e-25 78.4 0.0 8 154 160 317 153 386 0.78 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 691 DUF87 PF01935.12 229 8.5e-28 87.3 0.0 2 2 0.0004 0.004 6.6 0.0 201 229 481 509 402 509 0.88 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_4 - 70 HTH_31 PF13560.1 64 1.1e-13 40.9 0.0 1 1 1.3e-14 1.3e-13 40.7 0.0 1 57 9 64 9 68 0.95 # 4315 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.319 1_4 - 70 HTH_26 PF13443.1 63 3.5e-11 32.9 0.0 1 1 8.2e-12 4.1e-11 32.7 0.0 1 58 13 69 13 69 0.98 # 4315 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 194 HTH_26 PF13443.1 63 1.5e-05 14.9 0.1 1 1 7.4e-06 3.7e-05 13.6 0.1 6 36 154 184 149 190 0.87 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_2 - 691 AAA_10 PF12846.2 304 2.4e-21 66.0 0.0 1 1 2.4e-21 2.4e-20 62.7 0.0 2 297 176 608 175 613 0.72 # 1089 # 3161 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 308 Methyltransf_18 PF12847.2 112 0.00011 12.5 0.0 1 2 0.00061 0.0061 6.9 0.0 54 109 15 84 6 87 0.73 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_18 PF12847.2 112 0.00011 12.5 0.0 2 2 0.0094 0.094 3.0 0.0 23 46 234 274 223 304 0.62 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_11 PF08241.7 95 4.1e-06 17.0 0.3 1 2 3.6e-05 0.00036 10.7 0.1 74 95 63 84 2 84 0.70 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 308 Methyltransf_11 PF08241.7 95 4.1e-06 17.0 0.3 2 2 0.091 0.91 -0.2 0.0 25 42 260 277 225 296 0.57 # 5527 # 6450 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347 1_9 - 194 Phage_AlpA PF05930.7 51 2.3e-06 17.0 0.1 1 1 4.8e-07 4.8e-06 16.0 0.1 5 24 160 179 157 184 0.88 # 11000 # 11581 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/55b4af43-b1fc-44be-9671-1b82ef95060f # Target file: checkm_output/bins/pm1672/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1672/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/55b4af43-b1fc-44be-9671-1b82ef95060f checkm_output/bins/pm1672/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:07 2017 # [ok]