# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.6 0.0 1 2 0.0004 0.048 6.2 0.0 112 146 18 54 9 82 0.65 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.6 0.0 2 2 4e-05 0.0048 9.4 0.0 41 62 162 183 145 218 0.78 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_68 - 383 ABC_tran PF00005.22 137 2.9e-05 17.6 0.1 1 1 1.3e-06 7.7e-05 16.2 0.0 15 34 161 180 150 197 0.87 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 503 ABC_tran PF00005.22 137 0.00061 13.3 0.3 1 1 2.1e-05 0.0012 12.3 0.3 13 37 231 255 226 368 0.89 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 1_5 - 228 TIGR00095 TIGR00095 194 0.00035 13.1 0.0 1 2 0.0014 0.17 4.3 0.0 123 138 19 34 8 79 0.73 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 TIGR00095 TIGR00095 194 0.00035 13.1 0.0 2 2 0.00024 0.029 6.8 0.0 53 86 164 199 155 218 0.77 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_3 - 398 HHH_5 PF14520.1 60 0.00036 13.9 0.0 1 1 7.8e-06 0.00094 12.6 0.0 9 37 158 186 146 202 0.92 # 1398 # 2591 # -1 # ID=4_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 1_68 - 383 Sigma54_activat PF00158.21 168 0.00078 12.1 0.0 1 1 1.2e-05 0.0014 11.2 0.0 26 46 161 181 145 194 0.82 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_68 - 383 FtsK_SpoIIIE PF01580.13 205 0.00076 12.1 0.0 1 1 1e-05 0.0013 11.4 0.0 40 63 159 182 122 227 0.87 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 209 MobB PF03205.9 140 6.8e-05 15.8 0.1 1 1 1.6e-06 0.00019 14.3 0.0 10 42 11 41 1 46 0.79 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_41 - 208 HTH_39 PF14090.1 70 5e-07 22.3 1.1 1 2 0.026 3.2 0.6 0.1 4 39 43 78 41 82 0.86 # 34690 # 35313 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.538 1_41 - 208 HTH_39 PF14090.1 70 5e-07 22.3 1.1 2 2 3.6e-08 4.4e-06 19.3 0.0 9 67 149 207 143 207 0.88 # 34690 # 35313 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.538 1_17 - 199 TilS_C PF11734.3 74 0.00032 13.1 0.0 1 1 6.3e-06 0.00076 11.9 0.0 29 45 7 23 6 28 0.88 # 11206 # 11802 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_83 - 503 AAA_19 PF13245.1 76 0.00013 14.9 0.6 1 1 5.3e-06 0.00032 13.6 0.0 6 36 224 255 221 272 0.70 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 4_2 - 209 AAA_19 PF13245.1 76 0.00035 13.5 0.1 1 2 0.00019 0.012 8.6 0.0 20 48 11 35 9 44 0.84 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 AAA_19 PF13245.1 76 0.00035 13.5 0.1 2 2 0.021 1.3 2.1 0.0 42 63 135 158 118 184 0.76 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 CbiA PF01656.18 195 2.1e-22 72.6 0.0 1 1 3.1e-24 3.7e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_5 - 228 MethyltransfD12 PF02086.10 260 0.00055 12.6 0.0 1 2 0.018 2.2 0.8 0.0 175 188 18 31 8 71 0.83 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 MethyltransfD12 PF02086.10 260 0.00055 12.6 0.0 2 2 4e-05 0.0048 9.5 0.0 20 46 163 189 148 197 0.78 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_46 - 529 Sigma70_r4_2 PF08281.7 54 0.00017 14.2 0.4 1 1 6.7e-06 0.00081 12.1 0.4 3 51 140 192 138 195 0.86 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 5_1 - 235 rve PF00665.21 120 3.9e-13 42.7 0.1 1 2 0.015 1.8 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 rve PF00665.21 120 3.9e-13 42.7 0.1 2 2 6.1e-14 7.3e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_2 - 209 YhjQ PF06564.7 244 2.8e-05 16.7 0.3 1 2 1.8e-06 0.00021 13.8 0.3 4 38 3 37 1 50 0.89 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 YhjQ PF06564.7 244 2.8e-05 16.7 0.3 2 2 0.029 3.5 0.0 0.0 108 144 69 103 44 113 0.78 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_68 - 383 AAA_23 PF13476.1 202 3e-05 17.6 0.1 1 1 1.1e-06 6.7e-05 16.4 0.0 20 40 158 178 144 206 0.85 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 503 AAA_23 PF13476.1 202 0.0002 14.9 0.0 1 1 6.5e-06 0.00039 13.9 0.0 18 37 228 247 210 264 0.79 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 1_5 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 38.0 0.1 1 2 2.1e-07 2.5e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 38.0 0.1 2 2 9.7e-08 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_83 - 503 AAA_30 PF13604.1 196 1.8e-06 20.8 0.0 1 1 2.9e-08 3.4e-06 19.9 0.0 2 45 213 256 212 263 0.91 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 5_1 - 235 HTH_Tnp_1 PF01527.15 76 0.0003 13.9 0.3 1 1 5.4e-06 0.00065 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_17 - 199 TIGR02433 TIGR02433 47 0.00022 13.5 0.1 1 1 4.4e-06 0.00053 12.3 0.0 29 45 7 23 6 25 0.90 # 11206 # 11802 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_32 - 768 TraG-D_C PF12696.2 128 2.5e-08 27.0 0.2 1 1 2.1e-10 2.5e-08 27.0 0.2 1 90 437 525 437 558 0.83 # 22736 # 25039 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 5_1 - 235 DDE_3 PF13358.1 146 0.00082 12.3 0.0 1 1 2.1e-05 0.0025 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_2 - 209 MipZ PF09140.6 261 2.2e-21 69.2 0.5 1 2 1.2e-12 1.4e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 MipZ PF09140.6 261 2.2e-21 69.2 0.5 2 2 1.6e-12 1.9e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_5 - 228 UPF0020 PF01170.13 180 1.7e-05 17.6 0.0 1 2 0.00031 0.037 6.7 0.0 103 119 17 33 4 88 0.74 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 UPF0020 PF01170.13 180 1.7e-05 17.6 0.0 2 2 6.2e-05 0.0074 9.0 0.0 28 54 163 189 158 221 0.67 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_46 - 529 Sigma70_r4 PF04545.11 50 3.1e-12 38.9 0.1 1 1 1.1e-13 1.3e-11 36.8 0.1 6 46 150 193 144 197 0.92 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_14 - 653 KorB PF08535.5 93 2.3e-05 17.7 0.0 1 1 6e-07 7.2e-05 16.1 0.0 2 43 152 193 151 203 0.93 # 8046 # 10004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 4_2 - 209 TIGR00064 TIGR00064 279 0.00027 13.0 0.5 1 2 0.00073 0.088 4.8 0.1 89 116 11 38 1 45 0.88 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 TIGR00064 TIGR00064 279 0.00027 13.0 0.5 2 2 0.00024 0.029 6.4 0.0 153 175 68 90 60 99 0.82 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_5 - 228 N6_N4_Mtase PF01555.13 231 1.2e-36 119.5 0.0 1 2 2e-15 2.4e-13 43.2 0.0 1 113 21 123 21 133 0.89 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 N6_N4_Mtase PF01555.13 231 1.2e-36 119.5 0.0 2 2 5.9e-25 7.1e-23 74.4 0.0 169 228 141 200 128 203 0.91 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_68 - 383 AAA_16 PF13191.1 185 9.5e-06 18.8 0.1 1 1 6.4e-07 3.9e-05 16.9 0.0 25 57 158 193 148 331 0.77 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 503 AAA_16 PF13191.1 185 0.0002 14.5 0.0 1 1 5.8e-06 0.00035 13.7 0.0 22 52 227 263 218 381 0.82 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 1_83 - 503 AAA_22 PF13401.1 131 6.5e-06 19.5 0.0 1 1 2.2e-07 1.3e-05 18.5 0.0 4 49 229 281 226 351 0.81 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 1_68 - 383 AAA_22 PF13401.1 131 8.3e-06 19.2 0.0 1 1 3.1e-07 1.8e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_68 - 383 TIGR00362 TIGR00362 437 0.0011 10.9 0.0 1 1 1.5e-05 0.0018 10.2 0.0 141 171 161 191 155 199 0.93 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_25 - 283 Methyltransf_27 PF13708.1 194 5.2e-67 218.3 0.0 1 1 5.8e-69 6.9e-67 217.9 0.0 2 194 85 278 84 278 0.96 # 16874 # 17722 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_68 - 383 AAA_29 PF13555.1 62 2.6e-05 16.9 0.0 1 1 1.1e-06 6.4e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 503 AAA_29 PF13555.1 62 3.4e-05 16.5 0.0 1 1 1.4e-06 8.5e-05 15.3 0.0 20 40 227 246 219 260 0.85 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 4_2 - 209 SRP54 PF00448.17 196 2.9e-07 23.2 0.1 1 1 1.5e-08 1.8e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 5_1 - 235 HTH_32 PF13565.1 77 1.6e-06 22.1 0.2 1 1 5.6e-08 6.8e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 84 HTH_3 PF01381.17 55 3.4e-05 16.9 0.0 1 2 1e-06 0.00012 15.1 0.0 1 34 6 39 6 45 0.90 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 84 HTH_3 PF01381.17 55 3.4e-05 16.9 0.0 2 2 0.083 10 -0.7 0.0 39 52 67 80 65 83 0.66 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_14 - 653 HTH_23 PF13384.1 50 5.2e-07 22.4 0.3 1 1 2.9e-07 8.7e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 8046 # 10004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 5_1 - 235 HTH_23 PF13384.1 50 7.3e-06 18.8 0.7 1 2 0.063 1.9 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 HTH_23 PF13384.1 50 7.3e-06 18.8 0.7 2 2 7.4e-06 0.00022 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 84 HTH_23 PF13384.1 50 4.3e-05 16.3 0.3 1 2 1.4e-05 0.00042 13.2 0.1 17 33 14 30 6 38 0.86 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 84 HTH_23 PF13384.1 50 4.3e-05 16.3 0.3 2 2 0.096 2.9 1.0 0.0 5 22 63 82 59 83 0.75 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_46 - 529 HTH_23 PF13384.1 50 0.00027 13.8 0.1 1 1 9e-06 0.00027 13.8 0.1 4 43 150 191 147 198 0.80 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 4_2 - 209 Fer4_NifH PF00142.13 273 8.9e-05 14.9 0.2 1 1 2.3e-06 0.00027 13.3 0.0 8 38 9 39 2 46 0.89 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_24 - 84 HTH_19 PF12844.2 64 9.4e-05 15.6 0.0 1 1 1.2e-06 0.00014 15.1 0.0 7 53 9 56 5 67 0.87 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 84 DUF1870 PF08965.5 118 0.00035 13.4 1.2 1 1 3.7e-06 0.00045 13.1 1.2 1 75 1 78 1 81 0.69 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_68 - 383 NB-ARC PF00931.17 287 0.00067 11.7 0.0 1 1 1.1e-05 0.0013 10.8 0.0 18 49 156 185 145 193 0.79 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_14 - 653 HTH_29 PF13551.1 112 0.00025 14.4 0.1 1 1 1e-05 0.0012 12.2 0.0 4 37 145 178 142 234 0.85 # 8046 # 10004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 5_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.8e-12 39.5 0.3 1 1 3e-14 3.6e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_68 - 383 PhoH PF02562.11 205 0.00011 14.6 0.0 1 1 2.3e-06 0.00028 13.3 0.0 15 60 153 198 141 230 0.86 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_32 - 768 TrwB_AAD_bind PF10412.4 386 3.2e-06 19.1 0.3 1 2 0.00019 0.022 6.4 0.0 11 32 132 153 126 166 0.79 # 22736 # 25039 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_32 - 768 TrwB_AAD_bind PF10412.4 386 3.2e-06 19.1 0.3 2 2 1.4e-05 0.0016 10.2 0.1 261 332 453 525 437 578 0.74 # 22736 # 25039 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 4_2 - 209 TIGR01968 TIGR01968 261 2e-11 36.5 0.8 1 2 6.4e-11 7.7e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 TIGR01968 TIGR01968 261 2e-11 36.5 0.8 2 2 0.00018 0.022 6.9 0.0 100 135 65 100 60 149 0.83 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_68 - 383 AAA_18 PF13238.1 129 7.8e-06 19.4 0.0 1 1 2.3e-07 1.4e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 503 AAA_18 PF13238.1 129 0.00096 12.6 0.2 1 1 3.6e-05 0.0021 11.5 0.2 1 18 232 249 232 266 0.88 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 4_3 - 398 IMS_HHH PF11798.3 32 5.7e-09 28.9 0.3 1 1 1.2e-10 1.5e-08 27.6 0.3 3 32 146 175 144 175 0.93 # 1398 # 2591 # -1 # ID=4_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 1_5 - 228 Methyltransf_15 PF09445.5 164 0.00096 11.9 0.0 1 2 0.045 5.4 -0.3 0.0 53 79 4 29 2 32 0.90 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_5 - 228 Methyltransf_15 PF09445.5 164 0.00096 11.9 0.0 2 2 4.2e-05 0.0051 9.5 0.0 3 31 166 194 164 209 0.86 # 2726 # 3409 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_68 - 383 DUF87 PF01935.12 229 4.1e-05 16.6 0.0 1 1 1.3e-06 7.7e-05 15.7 0.0 28 51 162 186 161 192 0.83 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_32 - 768 DUF87 PF01935.12 229 0.00064 12.7 0.1 1 1 5.8e-05 0.0035 10.3 0.0 16 40 130 153 120 166 0.81 # 22736 # 25039 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 5_1 - 235 HTH_28 PF13518.1 52 7e-05 16.0 1.2 1 1 2.5e-06 0.0003 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 84 HTH_31 PF13560.1 64 7.6e-07 22.5 2.0 1 2 1e-08 1.2e-06 21.9 1.2 3 43 3 43 2 57 0.86 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 84 HTH_31 PF13560.1 64 7.6e-07 22.5 2.0 2 2 0.1 12 -0.6 0.0 17 34 65 72 44 82 0.58 # 16044 # 16295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_83 - 503 T2SE PF00437.15 272 3e-37 121.1 0.0 1 1 8.5e-39 5.1e-37 120.3 0.0 66 269 161 378 142 380 0.87 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 1_68 - 383 T2SE PF00437.15 272 4e-35 114.1 0.0 1 1 1e-36 6e-35 113.6 0.0 109 261 142 292 23 309 0.78 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_68 - 383 NACHT PF05729.7 166 0.0012 11.7 0.0 1 1 1.8e-05 0.0022 10.8 0.0 4 27 161 184 159 193 0.84 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 209 AAA_17 PF13207.1 121 1.8e-05 18.7 0.0 1 1 1.2e-06 4.9e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_68 - 383 AAA_17 PF13207.1 121 0.00013 15.9 0.0 1 1 8.3e-06 0.00033 14.7 0.0 3 39 161 200 161 251 0.72 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 503 AAA_17 PF13207.1 121 0.0002 15.4 0.1 1 1 1.1e-05 0.00045 14.2 0.1 1 32 231 264 231 449 0.87 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 1_68 - 383 AAA_25 PF13481.1 194 5.8e-07 22.2 0.0 1 1 1.6e-08 9.3e-07 21.6 0.0 21 73 146 196 127 236 0.80 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 209 AAA_25 PF13481.1 194 0.00014 14.4 0.1 1 1 6.2e-06 0.00037 13.1 0.0 42 87 10 44 3 90 0.78 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 VirC1 PF07015.6 231 4.1e-09 29.0 0.0 1 1 7.1e-11 8.6e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_68 - 383 AAA_33 PF13671.1 143 0.00072 12.6 0.1 1 1 1.8e-05 0.0021 11.1 0.0 3 21 161 179 159 194 0.90 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_49 - 80 Glyco_transf_41 PF13844.1 468 0.00049 11.3 0.1 1 1 4.1e-06 0.00049 11.3 0.1 134 172 19 57 7 78 0.81 # 40836 # 41075 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_68 - 383 RNA_helicase PF00910.17 107 4.8e-05 16.7 0.0 1 1 8.3e-07 9.9e-05 15.7 0.0 2 28 161 187 160 202 0.83 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 5_1 - 235 DDE_Tnp_IS240 PF13610.1 140 9.1e-53 171.2 0.0 1 1 1.1e-54 1.3e-52 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_93 - 214 TIGR00922 TIGR00922 172 0.00036 13.3 0.0 1 1 3.6e-06 0.00043 13.0 0.0 54 104 105 155 57 176 0.87 # 83587 # 84228 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_46 - 529 HTH_11 PF08279.7 55 0.00059 12.7 1.9 1 3 0.05 6.1 -0.2 0.1 14 39 30 55 18 59 0.82 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_46 - 529 HTH_11 PF08279.7 55 0.00059 12.7 1.9 2 3 9.1e-05 0.011 8.6 0.0 2 33 153 185 152 186 0.78 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_46 - 529 HTH_11 PF08279.7 55 0.00059 12.7 1.9 3 3 0.072 8.6 -0.7 0.0 12 25 232 245 227 247 0.81 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 3_6 - 302 LYTB PF02401.13 281 0.00082 11.5 0.0 1 1 2e-05 0.0024 9.9 0.0 236 272 81 117 70 124 0.91 # 2870 # 3775 # -1 # ID=3_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.657 1_54 - 1015 AAA_10 PF12846.2 304 2.2e-31 102.5 0.0 1 1 1.8e-32 4.3e-31 101.6 0.0 8 303 502 898 498 899 0.89 # 45720 # 48764 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_32 - 768 AAA_10 PF12846.2 304 1.6e-06 20.8 0.1 1 1 1.3e-07 3e-06 20.0 0.1 2 292 137 506 136 516 0.71 # 22736 # 25039 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 383 AAA_10 PF12846.2 304 2.7e-06 20.1 0.0 1 2 4.7e-06 0.00011 14.8 0.0 3 27 159 183 157 197 0.87 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_68 - 383 AAA_10 PF12846.2 304 2.7e-06 20.1 0.0 2 2 0.018 0.44 3.0 0.0 193 248 290 348 256 352 0.78 # 60789 # 61937 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 209 AAA_10 PF12846.2 304 0.00019 14.1 0.0 1 1 1.3e-05 0.0003 13.4 0.0 11 39 11 39 3 66 0.90 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_83 - 503 AAA_10 PF12846.2 304 0.0012 11.5 0.0 1 1 9.2e-05 0.0022 10.6 0.0 5 28 233 256 230 356 0.76 # 72728 # 74236 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.550 4_2 - 209 ArsA_ATPase PF02374.10 305 5.2e-08 25.4 0.9 1 3 1.2e-09 1.4e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 ArsA_ATPase PF02374.10 305 5.2e-08 25.4 0.9 2 3 0.053 6.4 -1.2 0.0 121 135 69 85 47 86 0.75 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 ArsA_ATPase PF02374.10 305 5.2e-08 25.4 0.9 3 3 0.075 9.1 -1.7 0.0 205 234 132 161 118 202 0.65 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 AAA_31 PF13614.1 157 5.1e-06 19.6 0.0 1 2 2.5e-07 3e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 4_2 - 209 AAA_31 PF13614.1 157 5.1e-06 19.6 0.0 2 2 0.055 6.6 -0.2 0.0 109 127 68 86 62 113 0.68 # 560 # 1186 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_46 - 529 TIGR02393 TIGR02393 238 5.8e-08 25.4 0.0 1 1 1.1e-09 1.3e-07 24.3 0.0 165 229 136 200 64 204 0.81 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_46 - 529 TIGR02392 TIGR02392 270 1.3e-09 30.9 0.1 1 1 2.4e-11 2.8e-09 29.8 0.1 209 262 138 193 98 199 0.82 # 38549 # 40135 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_12 - 176 SSB PF00436.20 104 7.8e-41 131.4 0.4 1 1 8.6e-43 1e-40 131.0 0.4 1 101 6 109 6 112 0.96 # 7169 # 7696 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/edcec170-bdf5-4577-b8ed-3c098755c5ee # Target file: checkm_output/bins/pm1666/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1666/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/edcec170-bdf5-4577-b8ed-3c098755c5ee checkm_output/bins/pm1666/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:03 2017 # [ok]