# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 1 2 0.00039 0.037 6.2 0.0 112 146 18 54 9 81 0.65 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 2 2 3.9e-05 0.0037 9.5 0.0 41 62 162 183 145 219 0.78 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_86 - 186 HTH_IclR PF09339.5 52 1.2e-05 17.7 0.2 1 1 4.6e-07 4.3e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_65 - 518 ABC_tran PF00005.22 137 8e-05 15.8 0.0 1 1 4.4e-06 0.00021 14.5 0.0 12 40 226 255 216 298 0.81 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_54 - 383 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 4.3e-06 0.00021 14.5 0.0 16 35 162 181 152 211 0.87 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_86 - 186 HTH_22 PF13309.1 64 0.00027 13.6 1.5 1 1 1.2e-05 0.0011 11.6 0.1 35 63 156 179 143 180 0.76 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 228 TIGR00095 TIGR00095 194 0.00028 13.1 0.0 1 2 0.0015 0.14 4.3 0.0 123 138 19 34 8 78 0.75 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 TIGR00095 TIGR00095 194 0.00028 13.1 0.0 2 2 0.00024 0.023 6.8 0.0 53 86 164 199 155 218 0.77 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_90 - 424 HHH_5 PF14520.1 60 0.00029 13.9 0.0 1 1 9.2e-06 0.00087 12.3 0.0 9 37 184 212 175 229 0.93 # 83862 # 85133 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_86 - 186 HTH_40 PF14493.1 91 0.00063 12.8 0.6 1 1 2.1e-05 0.002 11.2 0.1 7 32 152 177 147 183 0.89 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_86 - 186 HTH_38 PF13936.1 44 2.9e-06 19.6 1.4 1 1 5.9e-08 5.6e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_54 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 1 2 0.033 1.6 1.3 0.0 14 60 61 108 61 127 0.88 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_54 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 2 2 6.2e-06 0.00029 13.4 0.0 5 26 162 183 160 193 0.90 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_89 - 209 MobB PF03205.9 140 5.4e-05 15.8 0.1 1 1 3.2e-06 0.00015 14.3 0.0 10 42 11 41 1 46 0.79 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_15 - 199 TilS_C PF11734.3 74 0.00028 13.0 0.0 1 1 8.6e-06 0.00081 11.5 0.0 29 45 7 23 6 28 0.88 # 9497 # 10093 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_65 - 518 AAA_19 PF13245.1 76 9.2e-05 15.0 0.0 1 1 5.3e-06 0.00025 13.6 0.0 10 46 226 259 218 270 0.79 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_89 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 1 2 0.00019 0.0092 8.6 0.0 20 48 11 35 9 44 0.84 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 2 2 0.021 1 2.1 0.0 42 63 135 158 118 184 0.76 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 CbiA PF01656.18 195 1.7e-22 72.6 0.0 1 1 3.1e-24 2.9e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 228 MethyltransfD12 PF02086.10 260 0.00041 12.7 0.0 1 2 0.015 1.4 1.0 0.0 175 188 18 31 8 92 0.82 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 MethyltransfD12 PF02086.10 260 0.00041 12.7 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_80 - 96 Sigma70_r4_2 PF08281.7 54 4.1e-08 25.5 0.2 1 2 0.099 9.4 -1.3 0.0 6 14 4 12 3 13 0.83 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_80 - 96 Sigma70_r4_2 PF08281.7 54 4.1e-08 25.5 0.2 2 2 1.4e-09 1.4e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_89 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 1 2 1.8e-06 0.00017 13.8 0.3 4 38 3 37 1 50 0.89 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 2 2 0.029 2.8 0.0 0.0 108 144 69 103 44 113 0.78 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_65 - 518 AAA_23 PF13476.1 202 0.00017 14.8 0.1 1 1 1.1e-05 0.00052 13.2 0.0 20 38 226 244 209 249 0.86 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_54 - 383 AAA_23 PF13476.1 202 0.00021 14.5 0.0 1 1 7.3e-06 0.00035 13.8 0.0 19 40 157 178 142 209 0.83 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_2 - 228 Methyltransf_26 PF13659.1 117 6.6e-12 38.4 0.1 1 2 1.5e-07 1.4e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 Methyltransf_26 PF13659.1 117 6.6e-12 38.4 0.1 2 2 1e-07 9.7e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_65 - 518 AAA_30 PF13604.1 196 0.00017 14.0 0.0 1 1 3.2e-06 0.0003 13.2 0.0 4 44 211 251 209 280 0.86 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_15 - 199 TIGR02433 TIGR02433 47 0.00026 13.0 0.1 1 1 8.8e-06 0.00083 11.4 0.0 30 45 8 23 7 25 0.91 # 9497 # 10093 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_80 - 96 GerE PF00196.14 58 1.3e-06 20.5 0.0 1 1 1.9e-08 1.8e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_27 - 764 TraG-D_C PF12696.2 128 1.2e-06 21.3 0.2 1 1 2.8e-08 2.7e-06 20.1 0.2 1 88 437 524 437 554 0.82 # 19722 # 22013 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_89 - 209 MipZ PF09140.6 261 1.8e-21 69.2 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 MipZ PF09140.6 261 1.8e-21 69.2 0.5 2 2 1.6e-12 1.5e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 228 UPF0020 PF01170.13 180 1.1e-05 17.9 0.0 1 2 0.00026 0.025 7.0 0.0 103 123 17 37 4 88 0.71 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 UPF0020 PF01170.13 180 1.1e-05 17.9 0.0 2 2 6.3e-05 0.006 9.0 0.0 28 54 163 189 158 220 0.67 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_76 - 421 DDE_Tnp_1 PF01609.16 213 7.6e-35 113.2 0.2 1 1 1.7e-36 1.6e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 67072 # 68334 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_71 - 198 Trp_repressor PF01371.14 88 0.00027 13.7 0.0 1 1 4.1e-06 0.00039 13.2 0.0 1 40 103 142 103 151 0.95 # 64312 # 64905 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.370 1_65 - 518 AAA PF00004.24 132 0.00052 13.1 0.0 1 3 0.057 5.4 0.1 0.0 38 57 81 100 50 113 0.80 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_65 - 518 AAA PF00004.24 132 0.00052 13.1 0.0 2 3 0.00033 0.031 7.3 0.0 1 21 228 248 228 277 0.83 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_65 - 518 AAA PF00004.24 132 0.00052 13.1 0.0 3 3 0.034 3.2 0.8 0.0 9 66 442 508 436 515 0.62 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 653 KorB PF08535.5 93 1.9e-05 17.7 0.0 1 1 6e-07 5.7e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 6337 # 8295 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_89 - 209 TIGR00064 TIGR00064 279 0.00022 13.0 0.5 1 2 0.00073 0.069 4.8 0.1 89 116 11 38 1 45 0.88 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 TIGR00064 TIGR00064 279 0.00022 13.0 0.5 2 2 0.00024 0.023 6.4 0.0 153 175 68 90 60 99 0.82 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 228 N6_N4_Mtase PF01555.13 231 4.4e-37 120.6 0.0 1 1 3.6e-37 3.4e-35 114.4 0.0 1 228 21 200 21 203 0.91 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_95 - 246 Hydantoinase_A PF01968.13 290 1.9e-05 16.7 0.1 1 1 4.6e-07 4.4e-05 15.5 0.1 72 97 164 189 151 210 0.84 # 87903 # 88640 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_65 - 518 AAA_16 PF13191.1 185 6.9e-05 15.7 0.0 1 1 4.6e-06 0.00022 14.1 0.0 8 52 213 254 212 330 0.81 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_54 - 383 AAA_16 PF13191.1 185 0.00028 13.7 0.0 1 1 1.2e-05 0.00058 12.7 0.0 27 52 160 188 148 282 0.82 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_54 - 383 AAA_22 PF13401.1 131 9.5e-06 18.6 0.0 1 1 4.9e-07 2.3e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_65 - 518 AAA_22 PF13401.1 131 0.00027 13.9 0.0 1 1 1.3e-05 0.00062 12.8 0.0 6 28 227 249 222 330 0.78 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_23 - 283 Methyltransf_27 PF13708.1 194 1.6e-66 216.4 0.0 1 1 2.3e-68 2.1e-66 215.9 0.0 2 194 85 278 84 278 0.96 # 15140 # 15988 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_65 - 518 AAA_29 PF13555.1 62 2.5e-05 16.6 0.0 1 1 1.1e-06 5.1e-05 15.6 0.0 21 40 224 242 216 254 0.83 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_54 - 383 AAA_29 PF13555.1 62 3.6e-05 16.1 0.0 1 1 2.3e-06 0.00011 14.6 0.0 26 44 160 178 151 186 0.83 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_86 - 186 HTH_Tnp_IS630 PF01710.11 120 8.9e-05 15.0 0.0 1 1 1.9e-06 0.00019 14.0 0.0 8 44 148 184 145 185 0.90 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_89 - 209 SRP54 PF00448.17 196 2.3e-07 23.2 0.1 1 1 1.5e-08 1.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_22 - 84 HTH_3 PF01381.17 55 3.7e-05 16.4 0.0 1 1 1e-06 9.7e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 14310 # 14561 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_76 - 421 DDE_Tnp_1_4 PF13701.1 449 3.1e-27 87.6 3.5 1 2 0.0052 0.49 1.2 0.0 11 42 5 36 3 62 0.72 # 67072 # 68334 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_76 - 421 DDE_Tnp_1_4 PF13701.1 449 3.1e-27 87.6 3.5 2 2 1.5e-28 1.4e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 67072 # 68334 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_12 - 653 HTH_23 PF13384.1 50 7.5e-07 21.6 0.6 1 1 2.9e-07 6.9e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 6337 # 8295 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_80 - 96 HTH_23 PF13384.1 50 3.1e-05 16.5 0.0 1 1 2e-06 4.8e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_86 - 186 HTH_23 PF13384.1 50 4.2e-05 16.0 0.3 1 1 1.8e-06 4.2e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 84 HTH_23 PF13384.1 50 6.1e-05 15.5 0.2 1 1 1.4e-05 0.00033 13.2 0.1 17 33 14 30 6 38 0.86 # 14310 # 14561 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_61 - 219 zf-DHHC PF01529.15 174 0.099 4.8 6.7 1 2 0.00037 0.035 6.3 4.0 85 163 4 82 1 93 0.82 # 54552 # 55208 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_61 - 219 zf-DHHC PF01529.15 174 0.099 4.8 6.7 2 2 0.083 7.9 -1.4 0.1 140 146 129 135 82 187 0.59 # 54552 # 55208 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_89 - 209 Fer4_NifH PF00142.13 273 7e-05 14.9 0.2 1 1 2.3e-06 0.00022 13.3 0.0 8 38 9 39 2 46 0.89 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_86 - 186 HTH_7 PF02796.10 45 2.2e-13 42.7 1.1 1 1 5.1e-15 4.9e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_22 - 84 HTH_19 PF12844.2 64 8.2e-05 15.5 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 14310 # 14561 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 84 DUF1870 PF08965.5 118 0.00024 13.6 1.0 1 1 3e-06 0.00028 13.4 1.0 1 75 1 78 1 82 0.69 # 14310 # 14561 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_86 - 186 HTH_29 PF13551.1 112 0.0001 15.3 0.6 1 2 0.074 2.3 1.3 0.2 24 46 114 136 88 153 0.67 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_86 - 186 HTH_29 PF13551.1 112 0.0001 15.3 0.6 2 2 3.1e-05 0.00097 12.2 0.0 4 35 151 181 148 184 0.90 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_80 - 96 HTH_29 PF13551.1 112 0.00014 14.9 0.0 1 1 6.4e-06 0.0002 14.3 0.0 8 36 33 60 27 76 0.79 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 653 HTH_29 PF13551.1 112 0.00021 14.3 0.0 1 1 3e-05 0.00096 12.2 0.0 4 37 145 178 142 234 0.85 # 6337 # 8295 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_65 - 518 G-alpha PF00503.15 389 0.00065 11.2 0.0 1 2 0.069 6.6 -2.0 0.0 234 272 70 113 51 117 0.81 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_65 - 518 G-alpha PF00503.15 389 0.00065 11.2 0.0 2 2 1.9e-05 0.0018 9.7 0.0 58 87 225 254 214 312 0.83 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_49 - 231 OB_NTP_bind PF07717.11 114 0.00052 12.7 0.0 1 1 7.8e-06 0.00074 12.2 0.0 24 83 28 97 16 158 0.79 # 41537 # 42229 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_57 - 195 DNA_pol3_delta PF06144.8 172 2e-06 20.3 0.0 1 1 3e-08 2.9e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 50114 # 50698 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_27 - 764 TrwB_AAD_bind PF10412.4 386 3.8e-07 21.8 0.3 1 2 9.3e-05 0.0089 7.4 0.0 11 32 132 153 126 157 0.84 # 19722 # 22013 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_27 - 764 TrwB_AAD_bind PF10412.4 386 3.8e-07 21.8 0.3 2 2 5.3e-06 0.0005 11.5 0.1 247 332 440 525 427 555 0.88 # 19722 # 22013 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_89 - 209 TIGR01968 TIGR01968 261 1.6e-11 36.5 0.8 1 2 6.4e-11 6.1e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 TIGR01968 TIGR01968 261 1.6e-11 36.5 0.8 2 2 0.00018 0.017 6.9 0.0 100 135 65 100 60 149 0.83 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_54 - 383 AAA_18 PF13238.1 129 1.4e-05 18.2 0.0 1 1 6e-07 2.9e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_65 - 518 AAA_18 PF13238.1 129 0.00033 13.8 0.0 1 1 2.2e-05 0.001 12.2 0.0 1 18 228 245 228 312 0.86 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 246 MutL PF13941.1 457 0.00026 12.2 0.1 1 1 4.5e-06 0.00043 11.5 0.1 230 278 150 199 129 223 0.77 # 87903 # 88640 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_90 - 424 IMS_HHH PF11798.3 32 1e-08 27.8 0.2 1 1 3.1e-10 2.9e-08 26.3 0.2 6 32 175 201 170 201 0.92 # 83862 # 85133 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_2 - 228 Methyltransf_15 PF09445.5 164 0.00073 11.9 0.0 1 2 0.042 4 -0.2 0.0 53 79 4 29 2 33 0.90 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 Methyltransf_15 PF09445.5 164 0.00073 11.9 0.0 2 2 4.3e-05 0.0041 9.5 0.0 3 31 166 194 164 208 0.86 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_46 - 235 DUF3810 PF12725.2 318 0.00083 11.1 0.8 1 1 1.3e-05 0.0013 10.5 0.8 91 174 107 189 96 194 0.86 # 38547 # 39251 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.502 1_54 - 383 DUF87 PF01935.12 229 0.00058 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 28 56 162 191 161 192 0.88 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_86 - 186 HTH_28 PF13518.1 52 0.00013 14.8 0.0 1 1 8.5e-06 0.0004 13.2 0.0 8 33 154 179 148 184 0.82 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_80 - 96 HTH_28 PF13518.1 52 0.00014 14.7 0.0 1 1 8.7e-06 0.00041 13.2 0.0 9 38 33 62 26 75 0.86 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_24 - 112 HTH_12 PF08461.5 66 0.00043 12.9 0.4 1 1 7.8e-06 0.00074 12.1 0.3 20 52 58 90 47 102 0.87 # 16074 # 16409 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.438 1_22 - 84 HTH_31 PF13560.1 64 5.5e-07 22.6 1.7 1 1 9.5e-09 9e-07 21.9 1.1 3 43 3 43 2 58 0.86 # 14310 # 14561 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_65 - 518 T2SE PF00437.15 272 1e-41 135.4 0.1 1 1 5.4e-43 2.6e-41 134.1 0.0 10 271 97 373 90 374 0.85 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_54 - 383 T2SE PF00437.15 272 7.6e-36 116.2 0.0 1 1 2.4e-37 1.1e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_95 - 246 StbA PF06406.6 318 1.9e-119 391.1 0.1 1 1 2.3e-121 2.1e-119 390.9 0.1 1 239 1 245 1 246 0.97 # 87903 # 88640 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_89 - 209 AAA_17 PF13207.1 121 1.5e-05 18.7 0.0 1 1 1.2e-06 3.9e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_54 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 1 1 7.1e-06 0.00022 14.9 0.0 3 47 161 208 161 251 0.76 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_65 - 518 AAA_17 PF13207.1 121 2.7e-05 17.8 0.1 1 1 3.4e-06 0.00011 15.9 0.0 1 23 227 249 227 342 0.74 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_89 - 209 AAA_25 PF13481.1 194 0.00011 14.4 0.1 1 1 9.3e-06 0.00029 13.1 0.0 42 87 10 44 3 90 0.78 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_54 - 383 AAA_25 PF13481.1 194 0.00019 13.7 0.0 1 1 1.1e-05 0.00033 12.9 0.0 24 58 148 182 124 207 0.78 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_65 - 518 AAA_25 PF13481.1 194 0.00028 13.2 0.0 1 2 0.00011 0.0035 9.5 0.0 19 65 211 260 200 270 0.72 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_65 - 518 AAA_25 PF13481.1 194 0.00028 13.2 0.0 2 2 0.069 2.2 0.4 0.0 153 190 297 337 292 340 0.73 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 246 Hydant_A_N PF05378.8 176 0.0011 11.3 4.4 1 2 0.0085 0.81 2.0 0.7 94 126 114 146 2 155 0.65 # 87903 # 88640 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_95 - 246 Hydant_A_N PF05378.8 176 0.0011 11.3 4.4 2 2 4e-05 0.0038 9.5 0.2 2 48 172 216 171 227 0.81 # 87903 # 88640 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_89 - 209 VirC1 PF07015.6 231 3.2e-09 29.0 0.0 1 1 7.1e-11 6.8e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_80 - 96 HTH_Tnp_ISL3 PF13542.1 52 5.8e-05 15.1 0.0 1 1 9.7e-07 9.2e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 70885 # 71172 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_54 - 383 RNA_helicase PF00910.17 107 9.1e-05 15.5 0.0 1 1 1.9e-06 0.00018 14.5 0.0 2 28 161 187 160 205 0.83 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_54 - 383 ATP_bind_1 PF03029.12 238 4.4e-05 15.9 0.0 1 1 7.2e-07 6.8e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_65 - 518 DAP3 PF10236.4 309 0.0006 11.6 0.0 1 1 1.2e-05 0.0011 10.7 0.0 21 42 223 244 214 253 0.86 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_86 - 186 TrmB PF01978.14 68 5.3e-05 15.8 0.0 1 1 1.1e-06 0.00011 14.8 0.0 19 44 155 180 150 181 0.89 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_41 - 1015 AAA_10 PF12846.2 304 1.1e-30 99.9 0.0 1 1 1.3e-31 2.5e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 33395 # 36439 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_27 - 764 AAA_10 PF12846.2 304 2.3e-05 16.8 1.0 1 1 3.6e-06 6.9e-05 15.2 0.9 2 287 137 501 136 514 0.62 # 19722 # 22013 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_89 - 209 AAA_10 PF12846.2 304 0.00015 14.1 0.0 1 1 1.3e-05 0.00024 13.4 0.0 11 39 11 39 3 66 0.90 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_65 - 518 AAA_10 PF12846.2 304 0.00021 13.6 0.0 1 1 2.1e-05 0.0004 12.7 0.0 4 30 228 256 226 304 0.78 # 57492 # 59045 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_54 - 383 AAA_10 PF12846.2 304 0.00048 12.4 0.0 1 1 5e-05 0.00096 11.4 0.0 2 21 158 177 157 196 0.83 # 47301 # 48449 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_86 - 186 HTH_20 PF12840.2 61 1.9e-06 20.5 0.2 1 2 0.0037 0.35 3.6 0.0 33 52 8 27 4 28 0.91 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_86 - 186 HTH_20 PF12840.2 61 1.9e-06 20.5 0.2 2 2 9.1e-06 0.00086 12.0 0.1 3 43 110 177 108 180 0.91 # 78877 # 79434 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 228 Methyltransf_11 PF08241.7 95 0.00059 13.2 0.0 1 2 0.0024 0.23 4.9 0.0 78 93 53 68 48 70 0.84 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 228 Methyltransf_11 PF08241.7 95 0.00059 13.2 0.0 2 2 0.0014 0.13 5.7 0.0 5 54 172 220 168 226 0.82 # 1018 # 1701 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_89 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 1 3 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 2 3 0.053 5.1 -1.2 0.0 121 135 69 85 47 86 0.75 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 3 3 0.075 7.2 -1.7 0.0 205 234 132 161 118 202 0.65 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 AAA_31 PF13614.1 157 4.1e-06 19.6 0.0 1 2 2.5e-07 2.4e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 209 AAA_31 PF13614.1 157 4.1e-06 19.6 0.0 2 2 0.055 5.2 -0.2 0.0 109 127 68 86 62 113 0.68 # 83064 # 83690 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_21 - 61 Yae1_N PF09811.4 39 5.5e-05 15.5 0.4 1 1 8.5e-07 8e-05 15.0 0.4 15 26 9 20 8 26 0.92 # 14097 # 14279 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_94 - 112 DHDPS PF00701.17 289 0.00075 10.9 0.0 1 1 9.2e-06 0.00087 10.7 0.0 21 77 13 67 2 76 0.86 # 87230 # 87565 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_10 - 176 SSB PF00436.20 104 1.3e-40 130.4 0.2 1 1 1.8e-42 1.7e-40 130.0 0.2 1 101 6 109 6 112 0.95 # 5460 # 5987 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/de5526ec-58a9-44e0-a4d9-35eb6d26254f # Target file: checkm_output/bins/pm1664/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1664/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/de5526ec-58a9-44e0-a4d9-35eb6d26254f checkm_output/bins/pm1664/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:49:05 2017 # [ok]