# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 228 Cons_hypoth95 PF03602.10 183 2.5e-05 16.9 0.0 1 2 0.00065 0.077 5.5 0.0 114 146 20 54 10 82 0.65 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_35 - 228 Cons_hypoth95 PF03602.10 183 2.5e-05 16.9 0.0 2 2 4e-05 0.0047 9.4 0.0 41 62 162 183 145 218 0.78 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_102 - 518 ABC_tran PF00005.22 137 8.8e-05 16.0 0.0 1 1 5.3e-06 0.00031 14.2 0.0 12 37 226 251 217 288 0.81 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_85 - 383 ABC_tran PF00005.22 137 0.00013 15.4 0.0 1 1 4.3e-06 0.00025 14.5 0.0 16 35 162 181 152 211 0.87 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_35 - 228 TIGR00095 TIGR00095 194 0.00035 13.1 0.0 1 2 0.0015 0.17 4.3 0.0 124 138 20 34 7 79 0.74 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_35 - 228 TIGR00095 TIGR00095 194 0.00035 13.1 0.0 2 2 0.00024 0.029 6.8 0.0 53 86 164 199 155 218 0.77 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_31 - 425 HHH_5 PF14520.1 60 0.0011 12.3 0.0 1 1 2.6e-05 0.003 10.9 0.0 9 37 184 212 172 229 0.92 # 21382 # 22656 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_53 - 314 HTH_38 PF13936.1 44 0.054 6.3 6.1 1 2 0.0042 0.49 3.2 5.5 5 30 245 287 243 290 0.77 # 39010 # 39951 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.538 1_53 - 314 HTH_38 PF13936.1 44 0.054 6.3 6.1 2 2 0.0059 0.69 2.7 0.2 10 27 281 298 277 305 0.59 # 39010 # 39951 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.538 1_85 - 383 MobB PF03205.9 140 2.2e-05 17.3 0.0 1 2 0.017 1.9 1.3 0.0 14 60 61 108 61 127 0.88 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_85 - 383 MobB PF03205.9 140 2.2e-05 17.3 0.0 2 2 3.1e-06 0.00036 13.4 0.0 5 26 162 183 160 193 0.90 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_49 - 199 TilS_C PF11734.3 74 0.00032 13.1 0.0 1 1 6.3e-06 0.00074 11.9 0.0 29 45 7 23 6 28 0.88 # 35865 # 36461 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_102 - 518 AAA_19 PF13245.1 76 0.00011 15.1 0.0 1 1 2.6e-06 0.00031 13.7 0.0 10 46 226 259 218 268 0.79 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_27 - 215 CbiA PF01656.18 195 4.3e-09 29.2 0.1 1 1 5.1e-11 6e-09 28.7 0.1 1 131 4 110 4 173 0.79 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_35 - 228 MethyltransfD12 PF02086.10 260 0.00036 13.1 0.0 1 2 0.011 1.2 1.5 0.0 174 188 17 31 8 90 0.84 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_35 - 228 MethyltransfD12 PF02086.10 260 0.00036 13.1 0.0 2 2 4e-05 0.0047 9.5 0.0 20 46 163 189 148 197 0.78 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_114 - 96 Sigma70_r4_2 PF08281.7 54 5.7e-08 25.3 0.1 1 1 1.4e-09 1.7e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 97949 # 98236 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_102 - 518 AAA_23 PF13476.1 202 0.00015 15.3 0.2 1 1 9.7e-06 0.00057 13.4 0.0 20 38 226 244 208 249 0.84 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_85 - 383 AAA_23 PF13476.1 202 0.00026 14.5 0.0 1 1 7.3e-06 0.00043 13.8 0.0 19 40 157 178 142 209 0.83 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_7 - 283 TIGR00573 TIGR00573 217 1.9e-15 49.8 0.0 1 1 2.7e-17 3.2e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 4145 # 4993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_35 - 228 Methyltransf_26 PF13659.1 117 2.1e-11 37.1 0.0 1 2 4.2e-07 5e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_35 - 228 Methyltransf_26 PF13659.1 117 2.1e-11 37.1 0.0 2 2 9.7e-08 1.1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_102 - 518 AAA_30 PF13604.1 196 0.00037 13.2 0.0 1 1 5.8e-06 0.00068 12.4 0.0 4 44 211 251 209 276 0.84 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_49 - 199 TIGR02433 TIGR02433 47 0.00022 13.5 0.1 1 1 4.4e-06 0.00052 12.3 0.0 29 45 7 23 6 25 0.90 # 35865 # 36461 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_114 - 96 GerE PF00196.14 58 1.6e-06 20.5 0.0 1 1 1.9e-08 2.2e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 97949 # 98236 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_60 - 764 TraG-D_C PF12696.2 128 6.1e-07 22.5 0.2 1 1 1.2e-08 1.4e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 45625 # 47916 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_27 - 215 MipZ PF09140.6 261 2.7e-08 26.3 2.3 1 2 0.0008 0.093 4.9 0.5 7 25 8 26 2 38 0.71 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_27 - 215 MipZ PF09140.6 261 2.7e-08 26.3 2.3 2 2 9.5e-09 1.1e-06 21.0 0.1 70 133 45 108 27 125 0.84 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_35 - 228 UPF0020 PF01170.13 180 2e-05 17.3 0.0 1 2 0.00039 0.046 6.4 0.0 104 123 18 37 5 89 0.71 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_35 - 228 UPF0020 PF01170.13 180 2e-05 17.3 0.0 2 2 6.2e-05 0.0072 9.0 0.0 28 54 163 189 158 221 0.67 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_94 - 421 DDE_Tnp_1 PF01609.16 213 9.3e-35 113.2 0.2 1 1 1.7e-36 2e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 79420 # 80682 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_108 - 198 Trp_repressor PF01371.14 88 0.00033 13.7 0.0 1 1 4.1e-06 0.00048 13.2 0.0 1 40 103 142 103 151 0.95 # 93835 # 94428 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.365 1_102 - 518 AAA PF00004.24 132 0.00029 14.2 0.1 1 3 0.064 7.5 -0.1 0.0 38 57 81 100 52 110 0.81 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_102 - 518 AAA PF00004.24 132 0.00029 14.2 0.1 2 3 0.00033 0.038 7.3 0.0 1 21 228 248 228 278 0.83 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_102 - 518 AAA PF00004.24 132 0.00029 14.2 0.1 3 3 0.017 2 1.8 0.0 9 66 442 508 436 515 0.64 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_35 - 228 N6_N4_Mtase PF01555.13 231 8.9e-37 119.9 0.0 1 1 3.4e-36 3.9e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 25043 # 25726 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_29 - 327 Hydantoinase_A PF01968.13 290 8.3e-09 28.0 0.2 1 2 1.7e-06 0.0002 13.6 0.1 66 98 154 185 141 192 0.79 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_29 - 327 Hydantoinase_A PF01968.13 290 8.3e-09 28.0 0.2 2 2 5.5e-06 0.00064 11.9 0.0 211 263 244 296 201 301 0.86 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_102 - 518 AAA_16 PF13191.1 185 0.00011 15.4 0.0 1 1 6.4e-06 0.00038 13.6 0.0 8 51 213 252 212 301 0.78 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_85 - 383 AAA_16 PF13191.1 185 0.00034 13.7 0.0 1 1 1.2e-05 0.00072 12.7 0.0 27 52 160 188 148 282 0.82 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_85 - 383 AAA_22 PF13401.1 131 1.2e-05 18.6 0.0 1 1 4.9e-07 2.9e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_102 - 518 AAA_22 PF13401.1 131 0.00031 14.0 0.0 1 1 1.3e-05 0.00074 12.8 0.0 6 28 227 249 222 330 0.77 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_56 - 283 Methyltransf_27 PF13708.1 194 1.6e-65 213.3 0.0 1 1 1.9e-67 2.2e-65 212.9 0.0 2 194 85 278 84 278 0.96 # 41045 # 41893 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_102 - 518 AAA_29 PF13555.1 62 3.3e-05 16.5 0.0 1 1 1.1e-06 6.7e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_85 - 383 AAA_29 PF13555.1 62 4.5e-05 16.1 0.0 1 1 2.3e-06 0.00013 14.6 0.0 26 44 160 178 151 186 0.83 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 327 TIGR02350 TIGR02350 596 0.00011 13.5 0.6 1 3 0.083 9.7 -2.9 0.0 362 381 80 99 67 130 0.59 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_29 - 327 TIGR02350 TIGR02350 596 0.00011 13.5 0.6 2 3 0.00011 0.012 6.7 0.0 175 200 159 181 142 198 0.82 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_29 - 327 TIGR02350 TIGR02350 596 0.00011 13.5 0.6 3 3 0.00048 0.056 4.5 0.0 271 348 220 295 205 308 0.85 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_7 - 283 RNase_H_2 PF13482.1 164 0.00013 15.0 0.0 1 1 7.8e-06 0.00091 12.2 0.0 1 79 105 199 105 255 0.57 # 4145 # 4993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_55 - 84 HTH_3 PF01381.17 55 3.3e-05 16.9 0.0 1 2 1e-06 0.00012 15.1 0.0 1 34 6 39 6 45 0.90 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 84 HTH_3 PF01381.17 55 3.3e-05 16.9 0.0 2 2 0.083 9.7 -0.7 0.0 39 52 67 80 65 83 0.66 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_109 - 99 YMF19 PF02326.10 86 0.00041 14.1 1.0 1 1 3.5e-06 0.00041 14.1 1.0 13 68 43 95 32 98 0.82 # 94425 # 94721 # -1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_94 - 421 DDE_Tnp_1_4 PF13701.1 449 3.8e-27 87.6 3.5 1 2 0.0052 0.6 1.2 0.0 11 42 5 36 3 62 0.72 # 79420 # 80682 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_94 - 421 DDE_Tnp_1_4 PF13701.1 449 3.8e-27 87.6 3.5 2 2 1.5e-28 1.7e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 79420 # 80682 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_46 - 683 HTH_23 PF13384.1 50 1.4e-05 17.9 0.0 1 1 1.6e-06 6.2e-05 15.8 0.0 13 40 179 206 169 210 0.87 # 32615 # 34663 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.588 1_55 - 84 HTH_23 PF13384.1 50 4.2e-05 16.3 0.3 1 2 1.1e-05 0.00041 13.2 0.1 17 33 14 30 6 38 0.86 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 84 HTH_23 PF13384.1 50 4.2e-05 16.3 0.3 2 2 0.072 2.8 1.0 0.0 5 22 63 82 59 83 0.75 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_114 - 96 HTH_23 PF13384.1 50 4.3e-05 16.3 0.0 1 1 1.5e-06 5.9e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 97949 # 98236 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_16 - 116 zf-DHHC PF01529.15 174 0.002 10.7 4.5 1 1 1.2e-05 0.0014 11.2 3.1 88 151 32 108 30 113 0.77 # 11355 # 11702 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_53 - 314 HTH_7 PF02796.10 45 0.00052 13.0 0.0 1 1 1.1e-05 0.0012 11.8 0.0 14 36 284 306 277 313 0.86 # 39010 # 39951 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.538 1_55 - 84 HTH_19 PF12844.2 64 9.2e-05 15.6 0.0 1 1 1.2e-06 0.00014 15.1 0.0 7 53 9 56 5 67 0.87 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 84 DUF1870 PF08965.5 118 0.00034 13.4 1.2 1 1 3.7e-06 0.00044 13.1 1.2 1 75 1 78 1 81 0.69 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_114 - 96 HTH_29 PF13551.1 112 0.00017 14.9 0.0 1 1 2.1e-06 0.00025 14.3 0.0 8 36 33 60 27 76 0.79 # 97949 # 98236 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_7 - 283 DNA_pol_A_exo1 PF01612.15 176 1.5e-05 17.7 0.0 1 1 2.7e-07 3.2e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 4145 # 4993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_102 - 518 G-alpha PF00503.15 389 0.00074 11.3 0.0 1 2 0.054 6.3 -1.6 0.0 234 272 70 113 29 117 0.79 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_102 - 518 G-alpha PF00503.15 389 0.00074 11.3 0.0 2 2 1.9e-05 0.0022 9.8 0.0 58 87 225 254 214 325 0.84 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_54 - 57 UBA PF00627.26 37 0.00027 13.9 0.1 1 2 0.036 4.2 0.6 0.0 6 16 4 14 1 20 0.79 # 40013 # 40183 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.509 1_54 - 57 UBA PF00627.26 37 0.00027 13.9 0.1 2 2 1.5e-05 0.0017 11.4 0.0 6 22 24 40 21 40 0.86 # 40013 # 40183 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.509 1_88 - 194 DNA_pol3_delta PF06144.8 172 2.4e-06 20.3 0.0 1 1 3e-08 3.5e-06 19.8 0.0 35 99 91 151 73 178 0.80 # 74584 # 75165 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_60 - 764 TrwB_AAD_bind PF10412.4 386 2.7e-06 19.3 0.2 1 2 9.3e-05 0.011 7.4 0.0 11 32 132 153 126 157 0.84 # 45625 # 47916 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_60 - 764 TrwB_AAD_bind PF10412.4 386 2.7e-06 19.3 0.2 2 2 3e-05 0.0035 9.0 0.1 247 332 440 525 427 555 0.88 # 45625 # 47916 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_27 - 215 TIGR01968 TIGR01968 261 9.6e-05 14.6 2.2 1 2 8e-06 0.00047 12.3 0.8 3 50 3 44 1 49 0.80 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_27 - 215 TIGR01968 TIGR01968 261 9.6e-05 14.6 2.2 2 2 0.016 0.94 1.5 0.0 101 140 63 102 49 126 0.75 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_29 - 327 TIGR01968 TIGR01968 261 0.00051 12.2 1.5 1 1 3.5e-05 0.0021 10.2 1.4 46 128 63 155 60 215 0.74 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_85 - 383 AAA_18 PF13238.1 129 1.8e-05 18.2 0.0 1 1 6e-07 3.5e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_102 - 518 AAA_18 PF13238.1 129 0.00038 13.9 0.0 1 1 2.1e-05 0.0013 12.2 0.0 1 18 228 245 228 316 0.86 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_31 - 425 IMS_HHH PF11798.3 32 3.6e-08 26.3 0.2 1 1 9.1e-10 1.1e-07 24.9 0.2 3 32 172 201 170 201 0.93 # 21382 # 22656 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_7 - 283 TIGR01406 TIGR01406 231 3.6e-17 55.5 0.0 1 1 5.2e-19 6.1e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 4145 # 4993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_77 - 235 DUF3810 PF12725.2 318 0.001 11.1 0.8 1 1 1.4e-05 0.0016 10.4 0.8 90 174 106 189 95 194 0.86 # 63018 # 63722 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_85 - 383 DUF87 PF01935.12 229 0.00072 12.5 0.0 1 1 1.1e-05 0.0013 11.7 0.0 28 56 162 191 161 192 0.88 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_114 - 96 HTH_28 PF13518.1 52 0.00017 14.7 0.0 1 1 4.3e-06 0.00051 13.2 0.0 9 38 33 62 26 75 0.86 # 97949 # 98236 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_7 - 283 TIGR01298 TIGR01298 200 7e-07 22.0 1.0 1 1 5.7e-08 6.6e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 4145 # 4993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_55 - 84 HTH_31 PF13560.1 64 7.4e-07 22.5 2.0 1 2 1e-08 1.2e-06 21.9 1.2 3 43 3 43 2 57 0.86 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 84 HTH_31 PF13560.1 64 7.4e-07 22.5 2.0 2 2 0.1 12 -0.6 0.0 17 34 65 72 44 82 0.58 # 40214 # 40465 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_102 - 518 T2SE PF00437.15 272 2.8e-41 134.3 0.1 1 1 9.6e-43 5.6e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_85 - 383 T2SE PF00437.15 272 9.4e-36 116.2 0.0 1 1 2.4e-37 1.4e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_29 - 327 StbA PF06406.6 318 1.4e-156 513.3 1.2 1 1 1.4e-158 1.6e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 19991 # 20971 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_85 - 383 AAA_17 PF13207.1 121 2.2e-05 18.4 0.1 1 2 4.7e-06 0.00028 14.9 0.0 3 47 161 208 161 251 0.76 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_85 - 383 AAA_17 PF13207.1 121 2.2e-05 18.4 0.1 2 2 0.086 5 1.1 0.1 24 113 332 363 274 374 0.60 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_102 - 518 AAA_17 PF13207.1 121 2.6e-05 18.2 0.2 1 1 2.1e-06 0.00012 16.0 0.0 1 24 227 255 227 345 0.72 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 87 TIGR02211 TIGR02211 221 0.0002 13.7 0.0 1 1 1.7e-06 0.0002 13.7 0.0 121 168 15 66 1 80 0.80 # 3845 # 4105 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.548 1_85 - 383 AAA_25 PF13481.1 194 0.00023 13.7 0.0 1 1 7e-06 0.00041 12.9 0.0 24 58 148 182 124 207 0.78 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_102 - 518 AAA_25 PF13481.1 194 0.00033 13.2 0.1 1 2 8.7e-05 0.0051 9.3 0.0 25 65 217 260 200 270 0.72 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_102 - 518 AAA_25 PF13481.1 194 0.00033 13.2 0.1 2 2 0.039 2.3 0.7 0.0 153 190 297 337 292 340 0.74 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_102 - 518 AAA_14 PF13173.1 128 0.00091 12.3 0.0 1 1 3.7e-05 0.0043 10.1 0.0 5 30 228 254 225 286 0.80 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_27 - 215 VirC1 PF07015.6 231 0.0006 12.0 0.0 1 2 0.00073 0.085 5.0 0.0 3 29 3 29 1 36 0.81 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_27 - 215 VirC1 PF07015.6 231 0.0006 12.0 0.0 2 2 0.00067 0.078 5.1 0.0 87 190 77 181 59 193 0.67 # 18538 # 19182 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_114 - 96 HTH_Tnp_ISL3 PF13542.1 52 7.1e-05 15.1 0.0 1 1 9.7e-07 0.00011 14.5 0.0 29 50 38 59 34 60 0.89 # 97949 # 98236 # -1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_85 - 383 RNA_helicase PF00910.17 107 0.00011 15.5 0.0 1 1 1.9e-06 0.00022 14.5 0.0 2 28 161 187 160 205 0.83 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_85 - 383 ATP_bind_1 PF03029.12 238 5.4e-05 15.9 0.0 1 1 7.2e-07 8.4e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_102 - 518 DAP3 PF10236.4 309 0.00073 11.6 0.0 1 1 1.2e-05 0.0014 10.7 0.0 21 42 223 244 215 253 0.86 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 3_1 - 403 Zn_Tnp_IS1595 PF12760.2 46 0.041 6.9 7.0 1 2 0.0024 0.29 4.2 0.5 19 28 76 86 67 100 0.76 # 335 # 1543 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 3_1 - 403 Zn_Tnp_IS1595 PF12760.2 46 0.041 6.9 7.0 2 2 0.0014 0.16 5.0 0.1 8 32 353 377 349 382 0.84 # 335 # 1543 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 101 TIGR01455 TIGR01455 442 2.9e-33 108.0 0.5 1 1 2.9e-35 3.4e-33 107.7 0.5 1 77 6 81 6 83 0.96 # 1577 # 1879 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.581 1_7 - 283 RNase_T PF00929.19 164 3.9e-26 85.4 0.0 1 1 4.3e-28 5e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 4145 # 4993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_72 - 1015 AAA_10 PF12846.2 304 1.3e-30 99.9 0.0 1 1 1.1e-31 3.1e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 57866 # 60910 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_60 - 764 AAA_10 PF12846.2 304 3e-05 16.6 1.0 1 1 3.1e-06 9.2e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 45625 # 47916 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_102 - 518 AAA_10 PF12846.2 304 0.00026 13.6 0.0 1 1 1.7e-05 0.00049 12.7 0.0 4 30 228 256 226 320 0.81 # 87310 # 88863 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_85 - 383 AAA_10 PF12846.2 304 0.0006 12.4 0.0 1 1 4e-05 0.0012 11.4 0.0 2 21 158 177 157 196 0.83 # 71771 # 72919 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_42 - 556 UPF0547 PF10571.4 26 0.0015 11.4 1.5 1 2 0.085 9.9 -0.8 0.2 16 22 94 102 93 103 0.80 # 28993 # 30660 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_42 - 556 UPF0547 PF10571.4 26 0.0015 11.4 1.5 2 2 3.2e-05 0.0037 10.1 0.1 1 10 498 507 498 512 0.91 # 28993 # 30660 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_2 - 272 Pterin_bind PF00809.17 210 3.3e-60 196.1 0.0 1 1 3.4e-62 4e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 675 # 1490 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 1_53 - 314 Yae1_N PF09811.4 39 2.5e-05 16.9 7.2 1 1 3.7e-07 4.3e-05 16.2 7.2 3 26 253 276 252 284 0.94 # 39010 # 39951 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.538 1_44 - 176 SSB PF00436.20 104 1.7e-40 130.3 0.2 1 1 1.9e-42 2.2e-40 129.9 0.2 1 101 6 109 6 112 0.95 # 31828 # 32355 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/42198be3-6600-4e54-8e10-3c9ae216b010 # Target file: checkm_output/bins/pm166/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm166/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/42198be3-6600-4e54-8e10-3c9ae216b010 checkm_output/bins/pm166/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:48:57 2017 # [ok]