# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 1 2 0.00039 0.038 6.2 0.0 112 146 18 54 9 81 0.65 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.6 0.0 2 2 4e-05 0.0038 9.4 0.0 41 62 162 183 145 218 0.78 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_49 - 383 ABC_tran PF00005.22 137 2.3e-05 17.6 0.1 1 1 1.3e-06 6.2e-05 16.2 0.0 15 34 161 180 150 197 0.87 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 ABC_tran PF00005.22 137 0.00031 13.9 0.0 1 1 1.2e-05 0.00057 13.1 0.0 13 40 231 258 226 364 0.92 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_12 - 228 TIGR00095 TIGR00095 194 0.00028 13.1 0.0 1 2 0.0015 0.14 4.3 0.0 123 138 19 34 8 78 0.75 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 TIGR00095 TIGR00095 194 0.00028 13.1 0.0 2 2 0.00024 0.023 6.8 0.0 53 86 164 199 155 218 0.77 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_49 - 383 Sigma54_activat PF00158.21 168 0.00062 12.1 0.0 1 1 1.2e-05 0.0011 11.2 0.0 26 46 161 181 145 194 0.82 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_49 - 383 FtsK_SpoIIIE PF01580.13 205 0.00061 12.1 0.0 1 1 1e-05 0.001 11.4 0.0 40 63 159 182 122 227 0.87 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 509 UvrD-helicase PF00580.16 315 1.9e-18 59.6 0.1 1 2 2.9e-07 2.7e-05 16.4 0.0 2 32 14 44 13 63 0.93 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 UvrD-helicase PF00580.16 315 1.9e-18 59.6 0.1 2 2 9.1e-15 8.8e-13 41.0 0.0 252 302 186 233 147 238 0.86 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_76 - 227 HTH_39 PF14090.1 70 2.4e-07 23.1 0.0 1 1 6.4e-09 6.2e-07 21.7 0.0 8 67 167 226 162 226 0.91 # 67943 # 68623 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_94 - 199 TilS_C PF11734.3 74 0.00016 13.7 0.0 1 1 5.1e-06 0.00049 12.2 0.0 29 45 7 23 6 28 0.88 # 85490 # 86086 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_17 - 509 AAA_19 PF13245.1 76 2.8e-08 26.3 0.1 1 1 2e-09 9.8e-08 24.6 0.1 9 73 25 81 17 84 0.76 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_34 - 503 AAA_19 PF13245.1 76 5.8e-05 15.7 0.8 1 1 2.6e-06 0.00013 14.6 0.1 4 37 222 256 219 271 0.70 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_12 - 228 MethyltransfD12 PF02086.10 260 0.00041 12.7 0.0 1 2 0.015 1.5 1.0 0.0 175 188 18 31 8 92 0.82 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 MethyltransfD12 PF02086.10 260 0.00041 12.7 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_70 - 529 Sigma70_r4_2 PF08281.7 54 0.00014 14.2 0.4 1 1 6.7e-06 0.00065 12.1 0.4 3 51 140 192 138 195 0.86 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_49 - 383 AAA_23 PF13476.1 202 2.4e-05 17.6 0.1 1 1 1.1e-06 5.3e-05 16.4 0.0 20 40 158 178 144 206 0.85 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_23 PF13476.1 202 0.00026 14.2 0.0 1 1 1e-05 0.00048 13.3 0.0 19 37 229 247 211 262 0.86 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_20 - 283 TIGR00573 TIGR00573 217 1.7e-15 49.6 0.0 1 1 3.1e-17 3e-15 48.8 0.0 12 181 107 274 103 281 0.80 # 16399 # 17247 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_12 - 228 Methyltransf_26 PF13659.1 117 5.8e-12 38.6 0.0 1 2 1.5e-07 1.5e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 Methyltransf_26 PF13659.1 117 5.8e-12 38.6 0.0 2 2 8.8e-08 8.5e-06 18.7 0.0 4 45 167 207 164 225 0.82 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_34 - 503 AAA_30 PF13604.1 196 2.1e-07 23.5 0.0 1 1 8.1e-09 3.9e-07 22.7 0.0 2 45 213 256 212 263 0.90 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_17 - 509 AAA_30 PF13604.1 196 2.1e-05 17.0 0.3 1 2 5.4e-06 0.00026 13.4 0.0 16 64 23 69 14 114 0.72 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 AAA_30 PF13604.1 196 2.1e-05 17.0 0.3 2 2 0.045 2.2 0.6 0.0 116 132 209 225 194 247 0.86 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_94 - 199 TIGR02433 TIGR02433 47 0.00023 13.2 0.1 1 1 7.7e-06 0.00074 11.6 0.0 30 45 8 23 7 25 0.91 # 85490 # 86086 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_82 - 767 TraG-D_C PF12696.2 128 1.6e-08 27.3 2.3 1 1 2.1e-10 2e-08 27.0 0.2 1 90 437 525 437 558 0.83 # 73308 # 75608 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_12 - 228 UPF0020 PF01170.13 180 1.1e-05 17.9 0.0 1 2 0.00026 0.025 7.0 0.0 103 123 17 37 4 88 0.71 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 UPF0020 PF01170.13 180 1.1e-05 17.9 0.0 2 2 6.3e-05 0.0061 9.0 0.0 28 54 163 189 158 220 0.67 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_70 - 529 Sigma70_r4 PF04545.11 50 2.5e-12 38.9 0.1 1 1 1.1e-13 1.1e-11 36.8 0.1 6 46 150 193 144 197 0.92 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_2 - 653 KorB PF08535.5 93 1.8e-05 17.7 0.0 1 1 6e-07 5.7e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 246 # 2204 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_12 - 228 N6_N4_Mtase PF01555.13 231 4.3e-37 120.6 0.0 1 1 1.8e-36 1.7e-34 112.1 0.0 1 228 21 200 21 203 0.91 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_15 - 324 Hydantoinase_A PF01968.13 290 5e-06 18.6 0.9 1 2 6.7e-07 6.4e-05 15.0 0.6 62 103 152 192 105 219 0.76 # 11841 # 12812 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_15 - 324 Hydantoinase_A PF01968.13 290 5e-06 18.6 0.9 2 2 0.02 1.9 0.2 0.0 219 261 254 296 200 301 0.71 # 11841 # 12812 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_49 - 383 AAA_16 PF13191.1 185 7.6e-06 18.8 0.1 1 1 6.4e-07 3.1e-05 16.9 0.0 25 57 158 193 148 331 0.77 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_16 PF13191.1 185 8.8e-05 15.4 0.0 1 1 3.4e-06 0.00017 14.5 0.0 23 54 228 259 217 336 0.87 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_49 - 383 AAA_22 PF13401.1 131 6.7e-06 19.2 0.0 1 1 3.1e-07 1.5e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_22 PF13401.1 131 1.1e-05 18.4 0.0 1 1 4.5e-07 2.1e-05 17.5 0.0 4 49 229 281 225 345 0.80 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_49 - 383 TIGR00362 TIGR00362 437 0.00084 10.9 0.0 1 1 1.5e-05 0.0015 10.2 0.0 141 171 161 191 155 199 0.93 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 509 TIGR01074 TIGR01074 668 4.8e-12 37.3 0.5 1 3 0.0059 0.57 0.8 0.0 5 32 16 43 13 65 0.86 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 TIGR01074 TIGR01074 668 4.8e-12 37.3 0.5 2 3 4.8e-06 0.00046 11.0 0.0 207 252 191 233 167 242 0.84 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 TIGR01074 TIGR01074 668 4.8e-12 37.3 0.5 3 3 2.1e-09 2.1e-07 22.1 0.1 541 610 398 470 359 480 0.80 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_86 - 283 Methyltransf_27 PF13708.1 194 3e-66 215.5 0.0 1 1 4.3e-68 4.1e-66 215.0 0.0 2 194 85 278 84 278 0.96 # 79547 # 80395 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_34 - 503 AAA_29 PF13555.1 62 2e-05 17.0 0.0 1 1 1.1e-06 5e-05 15.7 0.0 20 40 227 246 217 262 0.80 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_49 - 383 AAA_29 PF13555.1 62 2.1e-05 16.9 0.0 1 1 1.1e-06 5.1e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 509 TIGR00609 TIGR00609 1175 1.7e-17 55.3 1.2 1 3 0.01 0.97 -0.2 0.0 13 27 29 43 19 66 0.83 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 TIGR00609 TIGR00609 1175 1.7e-17 55.3 1.2 2 3 3.6e-11 3.5e-09 27.7 0.1 369 419 188 233 176 235 0.91 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 TIGR00609 TIGR00609 1175 1.7e-17 55.3 1.2 3 3 1.4e-09 1.3e-07 22.5 0.2 723 810 404 469 390 499 0.79 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_20 - 283 RNase_H_2 PF13482.1 164 9.3e-05 15.1 0.0 1 1 6.8e-06 0.00066 12.4 0.0 1 79 105 199 105 254 0.56 # 16399 # 17247 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_87 - 84 HTH_3 PF01381.17 55 3.8e-05 16.4 0.0 1 1 1e-06 9.8e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 80975 # 81226 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_2 - 653 HTH_23 PF13384.1 50 1.7e-06 20.5 0.0 1 1 2.2e-07 6.9e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 246 # 2204 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_87 - 84 HTH_23 PF13384.1 50 6.1e-05 15.5 0.2 1 1 1.1e-05 0.00034 13.2 0.1 17 33 14 30 6 38 0.86 # 80975 # 81226 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_70 - 529 HTH_23 PF13384.1 50 0.00022 13.8 0.1 1 1 6.8e-06 0.00022 13.8 0.1 4 43 150 191 147 198 0.80 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_87 - 84 HTH_19 PF12844.2 64 8.3e-05 15.5 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 80975 # 81226 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_32 - 432 YjeF_N PF03853.10 169 0.00099 11.6 0.0 1 1 2e-05 0.0019 10.6 0.0 7 70 289 353 284 410 0.73 # 28490 # 29785 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_87 - 84 DUF1870 PF08965.5 118 0.00024 13.6 1.0 1 1 3e-06 0.00029 13.4 1.0 1 75 1 78 1 82 0.69 # 80975 # 81226 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_49 - 383 NB-ARC PF00931.17 287 0.00053 11.7 0.0 1 1 1.1e-05 0.001 10.8 0.0 18 49 156 185 145 193 0.79 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 653 HTH_29 PF13551.1 112 0.00031 13.8 0.0 1 1 1e-05 0.00097 12.2 0.0 4 37 145 178 142 234 0.85 # 246 # 2204 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_20 - 283 DNA_pol_A_exo1 PF01612.15 176 6.4e-06 18.6 0.0 1 1 1.3e-07 1.3e-05 17.6 0.0 20 95 102 196 85 266 0.85 # 16399 # 17247 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_49 - 383 PhoH PF02562.11 205 9.1e-05 14.6 0.0 1 1 2.3e-06 0.00022 13.3 0.0 15 60 153 198 141 230 0.86 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 509 ResIII PF04851.10 184 8.8e-05 15.2 0.0 1 1 3.3e-06 0.00032 13.4 0.0 25 70 25 71 10 91 0.78 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_82 - 767 TrwB_AAD_bind PF10412.4 386 2.6e-06 19.0 0.2 1 2 0.00021 0.02 6.3 0.0 11 32 132 153 126 164 0.80 # 73308 # 75608 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_82 - 767 TrwB_AAD_bind PF10412.4 386 2.6e-06 19.0 0.2 2 2 1.4e-05 0.0013 10.2 0.1 261 332 453 525 437 578 0.74 # 73308 # 75608 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_49 - 383 AAA_18 PF13238.1 129 6.2e-06 19.4 0.0 1 1 2.3e-07 1.1e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_18 PF13238.1 129 0.0007 12.8 0.2 1 1 3.4e-05 0.0016 11.6 0.2 1 18 232 249 232 267 0.86 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_12 - 228 Methyltransf_15 PF09445.5 164 0.00073 12.0 0.0 1 2 0.042 4 -0.2 0.0 53 79 4 29 2 33 0.90 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 Methyltransf_15 PF09445.5 164 0.00073 12.0 0.0 2 2 4.2e-05 0.0041 9.5 0.0 3 31 166 194 164 209 0.86 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_20 - 283 TIGR01406 TIGR01406 231 2.1e-17 56.0 0.0 1 1 3.7e-19 3.6e-17 55.3 0.0 4 170 106 268 104 280 0.78 # 16399 # 17247 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_49 - 383 DUF87 PF01935.12 229 3.3e-05 16.6 0.0 1 1 1.3e-06 6.2e-05 15.7 0.0 28 51 162 186 161 192 0.83 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_82 - 767 DUF87 PF01935.12 229 0.00058 12.5 0.0 1 1 5e-05 0.0024 10.5 0.0 16 40 130 153 120 168 0.80 # 73308 # 75608 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_85 - 112 HTH_12 PF08461.5 66 0.00059 12.5 0.2 1 1 1.5e-05 0.0014 11.2 0.1 20 52 58 90 53 102 0.84 # 79126 # 79461 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_20 - 283 TIGR01298 TIGR01298 200 4.6e-07 22.3 0.8 1 1 4.5e-08 4.3e-06 19.1 0.8 93 189 167 267 97 276 0.80 # 16399 # 17247 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_34 - 503 PhnA_Zn_Ribbon PF08274.7 30 0.039 6.7 6.0 1 2 0.00014 0.013 8.2 0.6 19 29 379 389 378 390 0.88 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_34 - 503 PhnA_Zn_Ribbon PF08274.7 30 0.039 6.7 6.0 2 2 0.036 3.4 0.5 0.6 8 25 408 424 408 425 0.62 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_34 - 503 DEAD PF00270.24 169 0.00069 12.0 0.0 1 1 1.1e-05 0.001 11.4 0.0 2 41 215 256 214 325 0.82 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_87 - 84 HTH_31 PF13560.1 64 5.6e-07 22.6 1.7 1 1 9.5e-09 9.1e-07 21.9 1.1 3 43 3 43 2 58 0.86 # 80975 # 81226 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_17 - 509 UvrD_C_2 PF13538.1 104 1.9e-12 40.1 1.6 1 1 2.3e-14 2.2e-12 39.9 0.1 46 103 386 469 348 470 0.73 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_34 - 503 T2SE PF00437.15 272 9.1e-38 122.5 0.0 1 1 2.9e-39 1.4e-37 121.9 0.0 66 269 161 378 97 380 0.87 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_49 - 383 T2SE PF00437.15 272 3.7e-35 113.9 0.0 1 1 1.1e-36 5.4e-35 113.4 0.0 115 261 148 292 23 309 0.81 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_15 - 324 StbA PF06406.6 318 1.2e-120 395.0 0.4 1 1 1.5e-122 1.4e-120 394.8 0.4 1 317 2 320 2 321 0.99 # 11841 # 12812 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_49 - 383 NACHT PF05729.7 166 0.00094 11.7 0.0 1 1 1.8e-05 0.0017 10.8 0.0 4 27 161 184 159 193 0.84 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_49 - 383 AAA_17 PF13207.1 121 0.00011 15.9 0.0 1 1 5.5e-06 0.00026 14.7 0.0 3 39 161 200 161 251 0.72 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 503 AAA_17 PF13207.1 121 0.00017 15.3 0.2 1 1 9.5e-06 0.00046 13.9 0.1 1 32 231 264 231 401 0.84 # 30312 # 31820 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.549 1_21 - 94 TIGR02211 TIGR02211 221 0.00013 14.1 0.0 1 1 1.4e-06 0.00014 14.0 0.0 114 167 14 72 2 87 0.78 # 17293 # 17574 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.528 1_49 - 383 AAA_25 PF13481.1 194 4.7e-07 22.2 0.0 1 1 7.8e-09 7.5e-07 21.6 0.0 21 73 146 196 127 236 0.80 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 509 Viral_helicase1 PF01443.13 234 3.2e-11 36.0 0.1 1 3 0.0014 0.14 4.5 0.0 2 23 29 55 28 84 0.73 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 Viral_helicase1 PF01443.13 234 3.2e-11 36.0 0.1 2 3 4.3e-05 0.0041 9.4 0.0 54 105 184 231 154 284 0.75 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 Viral_helicase1 PF01443.13 234 3.2e-11 36.0 0.1 3 3 9.2e-08 8.8e-06 18.2 0.1 157 231 385 468 363 470 0.80 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_49 - 383 AAA_33 PF13671.1 143 0.00058 12.6 0.1 1 1 1.8e-05 0.0017 11.1 0.0 3 21 161 179 159 194 0.90 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_49 - 383 RNA_helicase PF00910.17 107 3.8e-05 16.7 0.0 1 1 8.3e-07 7.9e-05 15.7 0.0 2 28 161 187 160 202 0.83 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_24 - 214 TIGR00922 TIGR00922 172 0.00029 13.3 0.0 1 1 3.6e-06 0.00035 13.0 0.0 54 104 105 155 57 176 0.87 # 20323 # 20964 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_70 - 529 HTH_11 PF08279.7 55 0.00064 12.3 1.5 1 2 0.05 4.8 -0.2 0.1 14 39 30 55 18 59 0.82 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_70 - 529 HTH_11 PF08279.7 55 0.00064 12.3 1.5 2 2 9.1e-05 0.0087 8.6 0.0 2 33 153 185 152 186 0.78 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_20 - 283 RNase_T PF00929.19 164 6e-26 84.5 0.0 1 1 8e-28 7.7e-26 84.2 0.0 1 163 105 262 105 263 0.95 # 16399 # 17247 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_64 - 1015 AAA_10 PF12846.2 304 1.5e-31 102.7 0.0 1 1 9.4e-33 3e-31 101.8 0.0 8 303 502 898 498 899 0.89 # 55784 # 58828 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.566 1_49 - 383 AAA_10 PF12846.2 304 2.2e-06 20.1 0.0 1 2 2.8e-06 9e-05 14.8 0.0 3 27 159 183 157 197 0.87 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_49 - 383 AAA_10 PF12846.2 304 2.2e-06 20.1 0.0 2 2 0.011 0.35 3.0 0.0 193 248 290 348 256 352 0.78 # 42611 # 43759 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_82 - 767 AAA_10 PF12846.2 304 2.5e-06 19.9 0.2 1 1 1.7e-07 5.5e-06 18.8 0.2 2 292 137 506 136 516 0.67 # 73308 # 75608 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 509 UvrD_C PF13361.1 351 2.4e-16 52.9 0.1 1 1 2.5e-18 2.4e-16 52.9 0.1 279 346 400 469 344 473 0.76 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_12 - 228 Methyltransf_11 PF08241.7 95 0.00078 12.8 0.0 1 2 0.0024 0.23 4.9 0.0 78 93 53 68 48 70 0.84 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 228 Methyltransf_11 PF08241.7 95 0.00078 12.8 0.0 2 2 0.0018 0.17 5.3 0.0 5 53 172 219 168 226 0.82 # 6834 # 7517 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_70 - 529 TIGR02393 TIGR02393 238 4.7e-08 25.4 0.0 1 1 1.1e-09 1e-07 24.3 0.0 165 229 136 200 64 204 0.81 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_70 - 529 TIGR02392 TIGR02392 270 1.1e-09 30.9 0.1 1 1 2.4e-11 2.3e-09 29.8 0.1 209 262 138 193 98 199 0.82 # 64410 # 65996 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_88 - 69 Yae1_N PF09811.4 39 8.5e-07 21.3 4.2 1 1 1.4e-08 1.3e-06 20.7 4.2 15 34 9 28 8 30 0.83 # 81257 # 81463 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_17 - 509 AAA_11 PF13086.1 236 0.00033 13.1 0.1 1 2 0.002 0.19 4.1 0.0 22 60 30 77 12 84 0.68 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_17 - 509 AAA_11 PF13086.1 236 0.00033 13.1 0.1 2 2 0.00038 0.037 6.4 0.0 191 228 189 225 178 226 0.88 # 13486 # 15012 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_4 - 176 SSB PF00436.20 104 6.3e-41 131.4 0.4 1 1 8.6e-43 8.2e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 2554 # 3081 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/07015a7e-372c-49af-94b4-ee74617bb1ed # Target file: checkm_output/bins/pm1659/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1659/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/07015a7e-372c-49af-94b4-ee74617bb1ed checkm_output/bins/pm1659/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:48:47 2017 # [ok]