# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 228 Cons_hypoth95 PF03602.10 183 8.2e-06 18.3 0.0 1 2 0.00024 0.026 6.9 0.0 112 168 18 76 9 83 0.68 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_32 - 228 Cons_hypoth95 PF03602.10 183 8.2e-06 18.3 0.0 2 2 4e-05 0.0043 9.4 0.0 41 62 162 183 145 218 0.78 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_93 - 518 ABC_tran PF00005.22 137 0.00011 15.5 0.0 1 1 5.3e-06 0.00028 14.2 0.0 12 37 226 251 217 289 0.81 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 4.3e-06 0.00023 14.5 0.0 16 35 162 181 152 211 0.87 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_32 - 228 TIGR00095 TIGR00095 194 0.00032 13.1 0.0 1 2 0.0015 0.15 4.3 0.0 123 138 19 34 8 79 0.74 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_32 - 228 TIGR00095 TIGR00095 194 0.00032 13.1 0.0 2 2 0.00024 0.026 6.8 0.0 53 86 164 199 155 218 0.77 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_28 - 425 HHH_5 PF14520.1 60 0.00037 13.7 0.0 1 1 9.2e-06 0.00097 12.3 0.0 9 37 184 212 175 229 0.93 # 19820 # 21094 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_80 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 1 2 0.017 1.8 1.3 0.0 14 60 61 108 61 127 0.88 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_80 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 2 2 3.1e-06 0.00033 13.4 0.0 5 26 162 183 160 193 0.90 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_44 - 199 TilS_C PF11734.3 74 0.00029 13.1 0.0 1 1 6.3e-06 0.00067 11.9 0.0 29 45 7 23 6 28 0.88 # 31968 # 32564 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_93 - 518 AAA_19 PF13245.1 76 0.0001 15.1 0.0 1 1 2.6e-06 0.00028 13.7 0.0 10 46 226 259 218 268 0.79 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 215 CbiA PF01656.18 195 1.3e-09 30.7 0.1 1 1 1.8e-11 1.9e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_32 - 228 MethyltransfD12 PF02086.10 260 0.00045 12.7 0.0 1 2 0.015 1.6 1.0 0.0 175 188 18 31 8 88 0.82 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_32 - 228 MethyltransfD12 PF02086.10 260 0.00045 12.7 0.0 2 2 4e-05 0.0042 9.5 0.0 20 46 163 189 148 197 0.78 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_106 - 96 Sigma70_r4_2 PF08281.7 54 5.2e-08 25.3 0.1 1 1 1.4e-09 1.5e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 91348 # 91635 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_93 - 518 AAA_23 PF13476.1 202 0.00014 15.3 0.2 1 1 9.7e-06 0.00051 13.4 0.0 20 38 226 244 208 249 0.84 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 383 AAA_23 PF13476.1 202 0.00023 14.5 0.0 1 1 7.3e-06 0.00039 13.8 0.0 19 40 157 178 142 209 0.83 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_4 - 283 TIGR00573 TIGR00573 217 1.7e-15 49.8 0.0 1 1 2.7e-17 2.9e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 2977 # 3825 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_32 - 228 Methyltransf_26 PF13659.1 117 8.2e-12 38.2 0.1 1 2 1.9e-07 2e-05 17.6 0.0 57 114 7 71 2 74 0.72 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_32 - 228 Methyltransf_26 PF13659.1 117 8.2e-12 38.2 0.1 2 2 9.7e-08 1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_93 - 518 AAA_30 PF13604.1 196 0.00033 13.2 0.0 1 1 5.8e-06 0.00061 12.4 0.0 4 44 211 251 209 276 0.84 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_44 - 199 TIGR02433 TIGR02433 47 0.0002 13.5 0.1 1 1 4.4e-06 0.00047 12.3 0.0 29 45 7 23 6 25 0.90 # 31968 # 32564 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_106 - 96 GerE PF00196.14 58 1.5e-06 20.5 0.0 1 1 1.9e-08 2e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 91348 # 91635 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_55 - 764 TraG-D_C PF12696.2 128 3.4e-07 23.2 0.1 1 1 7.1e-09 7.6e-07 22.1 0.1 1 88 437 524 437 553 0.83 # 41695 # 43986 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 1 2 0.0008 0.085 4.8 0.5 7 25 8 26 2 38 0.71 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_24 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 2 2 9e-09 9.6e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_32 - 228 UPF0020 PF01170.13 180 1e-05 18.1 0.0 1 2 0.00022 0.023 7.2 0.0 103 127 17 41 4 89 0.69 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_32 - 228 UPF0020 PF01170.13 180 1e-05 18.1 0.0 2 2 6.2e-05 0.0065 9.0 0.0 28 54 163 189 158 221 0.67 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_99 - 197 Trp_repressor PF01371.14 88 0.00042 13.2 0.0 1 1 6.1e-06 0.00065 12.6 0.0 1 40 102 141 102 145 0.95 # 87199 # 87789 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_93 - 518 AAA PF00004.24 132 0.00028 14.1 0.1 1 3 0.064 6.8 -0.1 0.0 38 57 81 100 52 110 0.81 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 518 AAA PF00004.24 132 0.00028 14.1 0.1 2 3 0.00034 0.036 7.3 0.0 1 21 228 248 228 275 0.83 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 518 AAA PF00004.24 132 0.00028 14.1 0.1 3 3 0.017 1.8 1.8 0.0 9 66 442 508 436 515 0.64 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_41 - 683 KorB PF08535.5 93 2.1e-05 17.7 0.0 1 1 6.3e-07 6.7e-05 16.0 0.0 2 43 182 223 181 234 0.93 # 28718 # 30766 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_10 - 400 zf-C4_Topoisom PF01396.14 39 0.013 8.1 9.2 1 3 0.0002 0.021 7.4 0.3 22 36 53 66 43 69 0.86 # 6851 # 8050 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_10 - 400 zf-C4_Topoisom PF01396.14 39 0.013 8.1 9.2 2 3 0.0041 0.44 3.2 0.5 2 10 73 81 72 82 0.83 # 6851 # 8050 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_10 - 400 zf-C4_Topoisom PF01396.14 39 0.013 8.1 9.2 3 3 0.022 2.3 0.9 0.2 3 15 362 374 361 379 0.86 # 6851 # 8050 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_32 - 228 N6_N4_Mtase PF01555.13 231 3.5e-36 117.8 0.0 1 1 1.3e-35 1.4e-33 109.3 0.0 1 228 21 200 21 203 0.90 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_26 - 327 Hydantoinase_A PF01968.13 290 7e-09 28.1 0.3 1 2 1.7e-06 0.00018 13.6 0.1 66 98 154 185 141 192 0.79 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_26 - 327 Hydantoinase_A PF01968.13 290 7e-09 28.1 0.3 2 2 5.2e-06 0.00055 12.0 0.0 211 263 244 296 201 301 0.84 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_93 - 518 AAA_16 PF13191.1 185 0.0001 15.3 0.0 1 1 6.5e-06 0.00034 13.6 0.0 8 51 213 252 212 299 0.78 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 383 AAA_16 PF13191.1 185 0.00031 13.7 0.0 1 1 1.2e-05 0.00065 12.7 0.0 27 52 160 188 148 282 0.82 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_80 - 383 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 1 4.9e-07 2.6e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_93 - 518 AAA_22 PF13401.1 131 0.00027 14.1 0.0 1 1 1.2e-05 0.00065 12.9 0.0 6 28 227 249 222 332 0.76 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_51 - 283 Methyltransf_27 PF13708.1 194 3.5e-67 218.6 0.0 1 1 4.4e-69 4.7e-67 218.2 0.0 2 194 85 278 84 278 0.96 # 37113 # 37961 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_93 - 518 AAA_29 PF13555.1 62 2.9e-05 16.6 0.0 1 1 1.1e-06 6.1e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 383 AAA_29 PF13555.1 62 4.1e-05 16.1 0.0 1 1 2.3e-06 0.00012 14.6 0.0 26 44 160 178 151 186 0.83 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_26 - 327 TIGR02350 TIGR02350 596 0.00011 13.3 0.5 1 3 0.083 8.8 -2.9 0.0 362 381 80 99 67 130 0.59 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_26 - 327 TIGR02350 TIGR02350 596 0.00011 13.3 0.5 2 3 0.00011 0.011 6.7 0.0 175 200 159 181 142 198 0.82 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_26 - 327 TIGR02350 TIGR02350 596 0.00011 13.3 0.5 3 3 0.00057 0.06 4.3 0.0 274 348 223 295 205 308 0.84 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_4 - 283 RNase_H_2 PF13482.1 164 0.00012 14.9 0.0 1 1 7.8e-06 0.00083 12.2 0.0 1 79 105 199 105 255 0.57 # 2977 # 3825 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_50 - 84 HTH_3 PF01381.17 55 4.2e-05 16.4 0.0 1 1 1e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 36281 # 36532 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_41 - 683 HTH_23 PF13384.1 50 1e-06 21.3 0.5 1 1 2.3e-07 8.1e-06 18.5 0.0 13 40 179 206 173 210 0.91 # 28718 # 30766 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_106 - 96 HTH_23 PF13384.1 50 3.9e-05 16.3 0.0 1 1 1.5e-06 5.3e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 91348 # 91635 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 84 HTH_23 PF13384.1 50 6.8e-05 15.5 0.2 1 1 1.1e-05 0.00037 13.2 0.1 17 33 14 30 6 38 0.86 # 36281 # 36532 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_50 - 84 HTH_19 PF12844.2 64 9.1e-05 15.5 0.0 1 1 1.2e-06 0.00012 15.1 0.0 7 53 9 56 5 67 0.87 # 36281 # 36532 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_50 - 84 DUF1870 PF08965.5 118 0.00026 13.6 1.0 1 1 3e-06 0.00032 13.4 1.0 1 75 1 78 1 82 0.69 # 36281 # 36532 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_106 - 96 HTH_29 PF13551.1 112 0.00016 14.9 0.0 1 1 4.3e-06 0.00023 14.3 0.0 8 36 33 60 27 76 0.79 # 91348 # 91635 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_41 - 683 HTH_29 PF13551.1 112 0.00028 14.0 0.0 1 1 2.1e-05 0.0011 12.1 0.0 4 37 175 208 172 264 0.85 # 28718 # 30766 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_4 - 283 DNA_pol_A_exo1 PF01612.15 176 1.3e-05 17.7 0.0 1 1 2.7e-07 2.9e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 2977 # 3825 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_93 - 518 G-alpha PF00503.15 389 0.00068 11.3 0.0 1 2 0.054 5.7 -1.6 0.0 234 272 70 113 29 117 0.79 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 518 G-alpha PF00503.15 389 0.00068 11.3 0.0 2 2 1.9e-05 0.002 9.7 0.0 58 87 225 254 214 318 0.84 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_83 - 195 DNA_pol3_delta PF06144.8 172 2.2e-06 20.3 0.0 1 1 3e-08 3.2e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 70603 # 71187 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_55 - 764 TrwB_AAD_bind PF10412.4 386 1e-06 20.5 0.2 1 2 9.3e-05 0.0099 7.4 0.0 11 32 132 153 126 157 0.84 # 41695 # 43986 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_55 - 764 TrwB_AAD_bind PF10412.4 386 1e-06 20.5 0.2 2 2 1.3e-05 0.0014 10.2 0.1 247 332 440 525 427 542 0.88 # 41695 # 43986 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 215 TIGR01968 TIGR01968 261 8.2e-05 14.7 2.1 1 2 8.1e-06 0.00043 12.3 0.8 3 50 3 44 1 49 0.80 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_24 - 215 TIGR01968 TIGR01968 261 8.2e-05 14.7 2.1 2 2 0.017 0.89 1.5 0.0 101 140 63 102 49 123 0.75 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_26 - 327 TIGR01968 TIGR01968 261 0.00046 12.2 1.5 1 1 3.5e-05 0.0019 10.2 1.4 46 128 63 155 60 215 0.74 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_80 - 383 AAA_18 PF13238.1 129 1.6e-05 18.2 0.0 1 1 6e-07 3.2e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_93 - 518 AAA_18 PF13238.1 129 0.00036 13.9 0.0 1 1 2.3e-05 0.0012 12.1 0.0 1 18 228 245 228 300 0.86 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_28 - 425 IMS_HHH PF11798.3 32 1.1e-08 27.8 0.2 1 1 3.1e-10 3.3e-08 26.3 0.2 6 32 175 201 170 201 0.92 # 19820 # 21094 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_32 - 228 Methyltransf_15 PF09445.5 164 0.00082 11.9 0.0 1 2 0.042 4.5 -0.2 0.0 53 79 4 29 2 33 0.90 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_32 - 228 Methyltransf_15 PF09445.5 164 0.00082 11.9 0.0 2 2 4.2e-05 0.0045 9.5 0.0 3 31 166 194 164 209 0.86 # 23480 # 24163 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_4 - 283 TIGR01406 TIGR01406 231 3.2e-17 55.5 0.0 1 1 5.2e-19 5.5e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 2977 # 3825 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_72 - 235 DUF3810 PF12725.2 318 0.00092 11.1 0.8 1 1 1.4e-05 0.0015 10.4 0.8 90 174 106 189 95 194 0.86 # 59036 # 59740 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_80 - 383 DUF87 PF01935.12 229 0.00065 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_106 - 96 HTH_28 PF13518.1 52 0.00016 14.7 0.0 1 1 4.3e-06 0.00046 13.2 0.0 9 38 33 62 26 75 0.86 # 91348 # 91635 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_4 - 283 TIGR01298 TIGR01298 200 6.3e-07 22.0 1.0 1 1 5.7e-08 6e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 2977 # 3825 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_50 - 84 HTH_31 PF13560.1 64 6.2e-07 22.6 1.7 1 1 9.5e-09 1e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 36281 # 36532 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_93 - 518 T2SE PF00437.15 272 9.1e-41 132.5 0.1 1 1 3.5e-42 1.8e-40 131.5 0.0 10 271 97 373 90 374 0.85 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 383 T2SE PF00437.15 272 8.5e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_26 - 327 StbA PF06406.6 318 1.1e-156 513.5 1.2 1 1 1.2e-158 1.3e-156 513.4 1.2 1 318 1 319 1 319 1.00 # 18429 # 19409 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_80 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 1 2 4.7e-06 0.00025 14.9 0.0 3 47 161 208 161 251 0.76 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_80 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 2 2 0.086 4.5 1.1 0.1 24 113 332 363 274 374 0.60 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_93 - 518 AAA_17 PF13207.1 121 2.6e-05 18.1 0.3 1 1 2.2e-06 0.00011 16.0 0.0 1 24 227 255 227 342 0.73 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_3 - 94 TIGR02211 TIGR02211 221 0.00014 14.1 0.0 1 1 1.4e-06 0.00015 14.0 0.0 114 167 14 72 2 87 0.78 # 2656 # 2937 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_80 - 383 AAA_25 PF13481.1 194 0.00021 13.7 0.0 1 1 7e-06 0.00037 12.9 0.0 24 58 148 182 124 207 0.78 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_93 - 518 AAA_25 PF13481.1 194 0.00062 12.2 0.1 1 1 8.7e-05 0.0046 9.3 0.0 25 65 217 260 200 270 0.72 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 518 AAA_14 PF13173.1 128 0.00087 12.2 0.1 1 1 3.8e-05 0.004 10.1 0.0 5 30 228 254 225 284 0.80 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 215 VirC1 PF07015.6 231 0.00043 12.4 0.0 1 2 0.00073 0.077 5.0 0.0 3 29 3 29 1 36 0.81 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_24 - 215 VirC1 PF07015.6 231 0.00043 12.4 0.0 2 2 0.00052 0.055 5.5 0.0 87 190 77 181 59 194 0.70 # 16976 # 17620 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_106 - 96 HTH_Tnp_ISL3 PF13542.1 52 6.4e-05 15.1 0.0 1 1 9.7e-07 0.0001 14.5 0.0 29 50 38 59 34 60 0.89 # 91348 # 91635 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_19 - 197 PaaX PF07848.7 70 0.00038 13.5 0.0 1 1 6.7e-06 0.00071 12.6 0.0 15 68 23 80 13 82 0.77 # 13540 # 14130 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.646 1_80 - 383 RNA_helicase PF00910.17 107 0.0001 15.5 0.0 1 1 1.9e-06 0.0002 14.5 0.0 2 28 161 187 160 205 0.83 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_80 - 383 ATP_bind_1 PF03029.12 238 4.9e-05 15.9 0.0 1 1 7.2e-07 7.6e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_93 - 518 DAP3 PF10236.4 309 0.0007 11.5 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_10 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0072 9.2 6.7 1 2 0.0026 0.27 4.1 1.2 19 32 73 85 57 97 0.74 # 6851 # 8050 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_10 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0072 9.2 6.7 2 2 0.0005 0.053 6.4 0.4 8 32 350 374 346 379 0.84 # 6851 # 8050 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_4 - 283 RNase_T PF00929.19 164 3.5e-26 85.4 0.0 1 1 4.3e-28 4.6e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 2977 # 3825 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_67 - 1015 AAA_10 PF12846.2 304 1.2e-30 99.9 0.0 1 1 1e-31 2.8e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 53884 # 56928 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_55 - 764 AAA_10 PF12846.2 304 2.7e-05 16.7 1.0 1 1 3.1e-06 8.2e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 41695 # 43986 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_93 - 518 AAA_10 PF12846.2 304 0.00024 13.5 0.0 1 1 1.7e-05 0.00045 12.7 0.0 4 30 228 256 226 318 0.81 # 80674 # 82227 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 383 AAA_10 PF12846.2 304 0.00054 12.4 0.0 1 1 4e-05 0.0011 11.4 0.0 2 21 158 177 157 196 0.83 # 67790 # 68938 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_49 - 61 Yae1_N PF09811.4 39 6.2e-05 15.5 0.4 1 1 8.5e-07 9e-05 15.0 0.4 15 26 9 20 8 26 0.92 # 36068 # 36250 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_39 - 176 SSB PF00436.20 104 6.5e-41 131.5 0.3 1 1 7.9e-43 8.4e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 27931 # 28458 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ff5634eb-8d54-4337-83fb-024d60ecfae5 # Target file: checkm_output/bins/pm1643/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1643/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ff5634eb-8d54-4337-83fb-024d60ecfae5 checkm_output/bins/pm1643/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:48:26 2017 # [ok]