# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 511 KaiC PF06745.8 227 3e-05 15.5 0.0 1 1 9.2e-07 6.2e-05 14.5 0.0 21 63 246 289 241 300 0.81 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_24 - 92 Zn_Tnp_IS1 PF03811.8 36 5.5e-24 75.8 4.5 1 1 1.6e-25 1.1e-23 74.9 4.5 1 36 1 36 1 36 0.99 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_1 - 138 ABC_tran PF00005.22 137 2.4e-10 33.2 0.0 1 1 1e-11 3.3e-10 32.7 0.0 8 40 33 65 29 90 0.92 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 ABC_tran PF00005.22 137 0.00034 13.3 0.0 1 1 2.2e-05 0.00075 12.2 0.0 13 33 246 266 241 288 0.88 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_2 - 302 rve_3 PF13683.1 67 4.6e-20 63.3 0.1 1 1 9.6e-21 1.6e-19 61.6 0.0 2 67 216 281 215 281 0.98 # 544 # 1449 # -1 # ID=3_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 2_14 - 289 rve_3 PF13683.1 67 8.4e-18 56.1 0.0 1 1 1e-18 1.7e-17 55.1 0.0 4 67 215 279 212 279 0.96 # 6441 # 7307 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.549 1_30 - 196 rve_3 PF13683.1 67 3.7e-14 44.4 0.0 1 1 3.3e-15 5.5e-14 43.9 0.0 6 67 116 177 111 177 0.93 # 24465 # 25052 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 3_6 - 196 rve_3 PF13683.1 67 7.2e-14 43.5 0.0 1 1 6.7e-15 1.1e-13 42.9 0.0 6 67 116 177 111 177 0.92 # 3686 # 4273 # -1 # ID=3_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.532 1_8 - 511 FtsK_SpoIIIE PF01580.13 205 3.4e-05 15.7 0.0 1 1 1.7e-06 5.7e-05 15.0 0.0 42 59 248 265 228 269 0.91 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 FtsK_SpoIIIE PF01580.13 205 3.5e-05 15.7 0.0 1 1 1.5e-06 5.2e-05 15.1 0.0 36 58 34 56 14 62 0.81 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_1 - 142 Sigma54_DBD PF04552.8 160 0.00025 12.9 0.0 1 1 5.5e-06 0.00037 12.4 0.0 100 154 45 97 27 103 0.76 # 2 # 427 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_1 - 138 AAA_19 PF13245.1 76 1.8e-06 20.1 0.0 1 1 3.9e-08 2.6e-06 19.5 0.0 9 37 35 62 29 77 0.85 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_26 - 389 CbiA PF01656.18 195 6.7e-37 119.1 0.0 1 1 1.3e-38 8.9e-37 118.7 0.0 2 194 110 339 109 340 0.80 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_8 - 229 Sigma70_r4_2 PF08281.7 54 0.00037 12.3 0.0 1 1 8.9e-06 0.0006 11.7 0.0 17 48 158 188 150 194 0.79 # 2608 # 3294 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_23 - 326 Rep_3 PF01051.16 222 3.7e-33 107.3 0.1 1 1 7.6e-35 5.1e-33 106.8 0.1 3 214 10 265 8 271 0.90 # 16741 # 17718 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 2_14 - 289 rve PF00665.21 120 3.3e-31 100.3 0.0 1 1 4.1e-32 6.9e-31 99.2 0.0 3 119 126 240 124 241 0.96 # 6441 # 7307 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.549 3_6 - 196 rve PF00665.21 120 1.5e-28 91.7 0.0 1 1 1.4e-29 2.3e-28 91.1 0.0 2 119 25 139 24 140 0.97 # 3686 # 4273 # -1 # ID=3_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.532 1_30 - 196 rve PF00665.21 120 1e-27 89.0 0.0 1 1 1.5e-28 2.5e-27 87.8 0.0 2 119 25 139 24 140 0.97 # 24465 # 25052 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 3_2 - 302 rve PF00665.21 120 3.3e-25 80.9 0.1 1 1 4.5e-26 7.5e-25 79.7 0.0 3 119 123 243 121 244 0.96 # 544 # 1449 # -1 # ID=3_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 3_1 - 138 AAA_23 PF13476.1 202 4.5e-12 39.0 0.0 1 1 8e-14 5.4e-12 38.8 0.0 1 84 16 112 16 132 0.67 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 Zeta_toxin PF06414.7 201 0.00018 13.0 0.0 1 1 5.2e-06 0.00035 12.0 0.0 18 41 246 269 237 279 0.88 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_30 PF13604.1 196 8.7e-05 14.5 0.0 1 1 3.2e-06 0.00011 14.2 0.0 12 44 30 62 26 83 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_30 PF13604.1 196 0.00075 11.4 0.0 1 1 4.1e-05 0.0014 10.6 0.0 10 43 236 269 232 281 0.88 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_3 - 122 CPSase_L_D3 PF02787.14 123 0.00034 12.7 0.2 1 2 0.0027 0.18 3.9 0.0 5 31 11 37 8 49 0.85 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_3 - 122 CPSase_L_D3 PF02787.14 123 0.00034 12.7 0.2 2 2 0.00031 0.021 7.0 0.1 42 80 76 112 73 117 0.89 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_1 - 138 SMC_N PF02463.14 220 1.9e-09 29.4 0.1 1 1 7.8e-11 2.6e-09 28.9 0.1 2 45 14 57 13 63 0.92 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 4_1 - 378 SMC_N PF02463.14 220 6.8e-08 24.3 0.7 1 1 3.1e-09 1.1e-07 23.7 0.7 135 208 44 138 2 148 0.67 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 3_3 - 122 HTH_Tnp_1 PF01527.15 76 2.5e-21 67.8 1.1 1 1 2.4e-22 3.2e-21 67.5 0.6 2 74 8 87 7 89 0.89 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 109 HTH_Tnp_1 PF01527.15 76 2.9e-13 42.0 1.3 1 1 8.5e-14 1.1e-12 40.1 1.3 1 74 1 87 1 88 0.86 # 427 # 753 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_13 - 100 HTH_Tnp_1 PF01527.15 76 3.7e-11 35.3 2.9 1 1 3.5e-12 4.7e-11 34.9 2.9 3 76 11 79 9 79 0.90 # 6145 # 6444 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 2_28 - 58 HTH_Tnp_1 PF01527.15 76 2.1e-10 32.8 0.1 1 1 7.2e-11 9.7e-10 30.7 0.1 1 47 1 54 1 58 0.88 # 19102 # 19275 # 1 # ID=2_28;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_1 - 24 HTH_Tnp_1 PF01527.15 76 5.3e-06 18.7 0.1 1 1 3.9e-07 5.3e-06 18.7 0.1 1 22 1 22 1 24 0.92 # 2 # 73 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 2_26 - 389 MipZ PF09140.6 261 2.9e-06 18.8 0.4 1 2 3.5e-06 0.00024 12.6 0.0 2 47 108 153 107 157 0.87 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 MipZ PF09140.6 261 2.9e-06 18.8 0.4 2 2 0.0011 0.075 4.4 0.0 88 134 224 270 197 292 0.84 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 4_1 - 378 AAA_21 PF13304.1 303 2.7e-17 55.9 3.0 1 1 8e-19 2.7e-17 55.9 3.0 219 297 35 127 2 131 0.74 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 3_1 - 138 AAA_21 PF13304.1 303 8.2e-09 28.1 0.0 1 1 3.1e-10 1e-08 27.8 0.0 1 62 38 106 38 118 0.74 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_4 - 189 Sigma70_r4 PF04545.11 50 0.00028 12.6 0.0 1 1 7.7e-06 0.00052 11.7 0.0 16 37 68 89 66 101 0.89 # 973 # 1539 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.467 4_1 - 378 AAA PF00004.24 132 0.00018 14.1 0.4 1 1 6.3e-06 0.00043 12.9 0.2 39 116 67 135 33 148 0.78 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 2_19 - 655 KorB PF08535.5 93 2.6e-05 16.7 0.0 1 1 1.1e-06 7.6e-05 15.2 0.0 2 43 152 193 151 215 0.93 # 9754 # 11718 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_6 - 122 CTP_transf_2 PF01467.21 157 0.00043 12.7 0.0 1 1 6.8e-06 0.00045 12.6 0.0 31 67 6 41 1 98 0.65 # 1887 # 2252 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_8 - 511 Herpes_Helicase PF02689.9 819 0.00012 12.3 0.0 1 1 2.8e-06 0.00019 11.5 0.0 57 83 241 267 219 270 0.80 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 2_14 - 289 rve_2 PF13333.1 52 6.4e-23 73.0 1.5 1 2 0.016 0.35 3.4 0.0 41 52 101 112 88 112 0.75 # 6441 # 7307 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.549 2_14 - 289 rve_2 PF13333.1 52 6.4e-23 73.0 1.5 2 2 8.8e-23 2e-21 68.3 0.1 1 52 231 287 231 287 0.98 # 6441 # 7307 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.549 3_6 - 196 rve_2 PF13333.1 52 7.5e-09 28.0 0.0 1 1 6.1e-10 1.4e-08 27.1 0.0 1 44 130 176 130 183 0.88 # 3686 # 4273 # -1 # ID=3_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.532 1_30 - 196 rve_2 PF13333.1 52 8e-09 27.9 0.0 1 1 6.3e-10 1.4e-08 27.1 0.0 1 44 130 176 130 183 0.88 # 24465 # 25052 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 2_26 - 389 MerR_1 PF13411.1 69 0.00024 13.2 0.0 1 1 1.1e-05 0.00071 11.7 0.0 2 44 41 88 40 105 0.75 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 3_1 - 138 AAA_16 PF13191.1 185 0.00027 13.3 0.0 1 1 6e-06 0.0004 12.7 0.0 27 47 39 59 34 69 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_22 PF13401.1 131 4.2e-05 16.0 0.1 1 1 8.7e-06 0.0002 13.9 0.0 6 35 246 275 243 329 0.80 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 4_1 - 378 AAA_22 PF13401.1 131 0.00021 13.8 0.2 1 1 2.2e-05 0.0005 12.6 0.2 69 121 68 124 33 134 0.75 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 3_1 - 138 AAA_22 PF13401.1 131 0.00052 12.5 0.0 1 1 3.2e-05 0.00071 12.1 0.0 6 28 38 60 33 95 0.82 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_18 - 299 HTH_AraC PF00165.18 42 4.1e-18 57.1 0.1 1 2 9.4e-07 3.1e-05 16.1 0.0 7 40 210 242 207 244 0.92 # 13070 # 13966 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_18 - 299 HTH_AraC PF00165.18 42 4.1e-18 57.1 0.1 2 2 8e-14 2.7e-12 38.6 0.0 1 41 255 293 255 294 0.95 # 13070 # 13966 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 2_26 - 389 HTH_AraC PF00165.18 42 0.0006 12.1 0.0 1 1 3.6e-05 0.0012 11.1 0.0 4 26 35 57 33 62 0.81 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 3_1 - 138 AAA_29 PF13555.1 62 2.7e-10 32.0 0.0 1 1 1.3e-11 4.2e-10 31.4 0.0 14 51 27 64 14 67 0.82 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_29 PF13555.1 62 4.6e-05 15.3 0.0 1 1 4.7e-06 0.00016 13.6 0.0 21 40 243 261 232 268 0.81 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_17 - 148 Ribosomal_S19 PF00203.16 81 0.00015 13.8 0.0 1 1 3.8e-06 0.00026 13.0 0.0 31 61 73 104 65 130 0.88 # 12613 # 13056 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 3_1 - 138 MutS_V PF00488.16 235 0.0002 13.1 0.1 1 1 3.7e-06 0.00024 12.8 0.1 34 67 29 60 3 64 0.76 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_7 - 76 IF2_assoc PF08364.6 41 0.0013 11.2 2.8 1 2 0.043 2.9 0.4 0.3 19 29 6 16 3 16 0.78 # 2286 # 2513 # -1 # ID=2_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 2_7 - 76 IF2_assoc PF08364.6 41 0.0013 11.2 2.8 2 2 2.3e-05 0.0016 10.9 0.1 16 32 28 44 27 51 0.86 # 2286 # 2513 # -1 # ID=2_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 3_3 - 122 HTH_23 PF13384.1 50 1.5e-07 23.3 0.1 1 1 2.8e-08 3.1e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_19 - 655 HTH_23 PF13384.1 50 1.1e-06 20.6 0.0 1 1 4.8e-07 5.4e-06 18.4 0.0 13 39 149 175 143 180 0.92 # 9754 # 11718 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_13 - 100 HTH_23 PF13384.1 50 8.2e-06 17.8 0.0 1 1 1.5e-06 1.7e-05 16.8 0.0 7 40 20 52 14 60 0.86 # 6145 # 6444 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 92 HTH_23 PF13384.1 50 2.4e-05 16.3 0.0 1 1 3.4e-06 3.8e-05 15.7 0.0 7 40 53 86 51 90 0.92 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_28 - 58 HTH_23 PF13384.1 50 4.9e-05 15.3 0.3 1 1 1.1e-05 0.00013 14.0 0.3 5 41 10 54 8 57 0.86 # 19102 # 19275 # 1 # ID=2_28;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_2 - 109 HTH_23 PF13384.1 50 5.2e-05 15.3 0.4 1 1 1.3e-05 0.00015 13.8 0.2 5 42 10 55 8 69 0.84 # 427 # 753 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_24 - 92 zinc_ribbon_4 PF13717.1 36 3.9e-05 15.7 4.1 1 1 1.6e-06 0.0001 14.3 4.1 3 35 6 39 5 40 0.86 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_3 - 122 HTH_29 PF13551.1 112 1.5e-05 17.5 0.2 1 1 6.8e-07 2.3e-05 16.9 0.2 11 71 29 88 18 109 0.67 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_19 - 655 HTH_29 PF13551.1 112 0.0003 13.3 0.0 1 1 2.4e-05 0.00081 11.9 0.0 4 37 145 178 142 236 0.78 # 9754 # 11718 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_1 - 138 G-alpha PF00503.15 389 0.00036 11.6 0.0 1 1 7e-06 0.00047 11.2 0.0 63 85 41 63 29 78 0.89 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 Arch_ATPase PF01637.13 234 3.5e-05 15.9 0.0 1 1 1.9e-06 6.4e-05 15.0 0.0 6 44 231 268 230 298 0.84 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 Arch_ATPase PF01637.13 234 4.4e-05 15.6 0.0 1 1 2.6e-06 8.9e-05 14.6 0.0 7 42 24 58 19 77 0.87 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 TrwB_AAD_bind PF10412.4 386 2.1e-05 15.6 0.0 1 1 4.7e-07 3.2e-05 15.0 0.0 19 40 248 269 232 280 0.89 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 2_26 - 389 TIGR01968 TIGR01968 261 2.9e-08 25.3 0.1 1 2 2.6e-06 0.00017 13.0 0.0 3 37 108 142 106 145 0.93 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 TIGR01968 TIGR01968 261 2.9e-08 25.3 0.1 2 2 1.5e-05 0.001 10.4 0.0 104 145 227 268 215 340 0.81 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_8 - 511 AAA_18 PF13238.1 129 0.00011 14.9 0.3 1 1 8.7e-06 0.00058 12.5 0.0 2 20 248 266 248 321 0.82 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 TIGR00611 TIGR00611 365 7.8e-05 13.9 0.0 1 1 1.5e-06 9.9e-05 13.6 0.0 21 45 33 58 13 66 0.72 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_24 - 92 HTH_Tnp_IS1 PF12759.2 46 3.7e-32 101.9 0.3 1 1 8.7e-34 5.8e-32 101.3 0.3 1 46 43 88 43 88 0.99 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_1 - 138 DUF258 PF03193.11 161 0.00012 13.7 0.0 1 1 1.8e-06 0.00012 13.7 0.0 18 57 17 58 2 113 0.83 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 DUF87 PF01935.12 229 0.0004 12.5 0.2 1 2 0.074 4.9 -0.8 0.1 143 214 76 146 33 157 0.61 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 1_8 - 511 DUF87 PF01935.12 229 0.0004 12.5 0.2 2 2 2.6e-05 0.0017 10.5 0.0 28 45 249 266 247 276 0.89 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_3 - 122 HTH_28 PF13518.1 52 1.2e-08 27.2 0.5 1 1 1.2e-09 2.6e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_13 - 100 HTH_28 PF13518.1 52 3.7e-05 16.1 0.1 1 1 4.2e-06 9.5e-05 14.8 0.1 14 34 31 51 22 53 0.85 # 6145 # 6444 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 92 HTH_28 PF13518.1 52 4.2e-05 15.9 0.0 1 1 2.9e-06 6.5e-05 15.3 0.0 4 35 55 86 53 90 0.91 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_18 - 299 HTH_18 PF12833.2 81 5.8e-18 57.2 0.3 1 1 1.8e-19 1.2e-17 56.2 0.1 3 80 219 294 217 295 0.94 # 13070 # 13966 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 2_26 - 389 HTH_31 PF13560.1 64 8.6e-05 15.1 0.4 1 1 3.8e-06 0.00025 13.6 0.2 12 45 37 69 31 73 0.87 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_8 - 511 T2SE PF00437.15 272 8.2e-49 158.2 0.0 1 1 3.6e-50 1.2e-48 157.7 0.0 5 259 109 376 105 388 0.89 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 T2SE PF00437.15 272 0.00062 11.0 0.1 1 1 2.3e-05 0.00078 10.7 0.1 116 150 27 58 3 66 0.80 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 NACHT PF05729.7 166 2.2e-05 16.5 0.0 1 1 4.4e-07 2.9e-05 16.1 0.0 3 41 39 78 37 93 0.80 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_8 - 511 AAA_17 PF13207.1 121 8.1e-05 15.8 0.1 1 1 1.6e-05 0.00054 13.2 0.0 1 21 246 266 246 318 0.79 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_17 PF13207.1 121 0.00012 15.3 0.0 1 1 5.9e-06 0.0002 14.6 0.0 3 25 40 66 38 99 0.84 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 TIGR02211 TIGR02211 221 2.5e-06 19.2 0.0 1 1 4.6e-08 3.1e-06 18.9 0.0 20 60 24 65 9 75 0.79 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 AAA_25 PF13481.1 194 3.3e-05 15.7 0.0 1 1 6.3e-07 4.2e-05 15.3 0.0 30 64 33 67 20 84 0.80 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 138 AAA_15 PF13175.1 415 2.5e-09 28.9 0.1 1 1 7.4e-11 2.5e-09 28.9 0.1 2 50 15 64 14 124 0.78 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 4_1 - 378 AAA_15 PF13175.1 415 6.4e-09 27.6 9.2 1 1 1.9e-10 6.4e-09 27.6 9.2 286 410 8 127 2 131 0.75 # 1 # 1134 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_18 - 299 Mga PF05043.8 87 7.4e-05 15.4 0.3 1 2 0.088 5.9 -0.3 0.1 12 35 136 159 125 171 0.74 # 13070 # 13966 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_18 - 299 Mga PF05043.8 87 7.4e-05 15.4 0.3 2 2 6.7e-06 0.00045 12.9 0.0 2 52 181 233 180 241 0.90 # 13070 # 13966 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 2_26 - 389 VirC1 PF07015.6 231 4.4e-05 14.9 0.1 1 2 0.00028 0.019 6.3 0.0 4 42 109 147 107 154 0.91 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 VirC1 PF07015.6 231 4.4e-05 14.9 0.1 2 2 0.0003 0.02 6.2 0.1 84 139 235 290 222 312 0.77 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 3_3 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00023 12.7 1.6 1 2 7.2e-06 0.00048 11.7 0.1 7 42 8 44 8 46 0.92 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_3 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00023 12.7 1.6 2 2 0.081 5.4 -1.3 0.0 24 34 53 62 51 64 0.81 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_26 - 389 MerR PF00376.18 38 2.5e-07 22.6 0.0 1 1 8.8e-09 5.9e-07 21.4 0.0 1 28 41 68 41 74 0.95 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 3_3 - 122 CENP-B_N PF04218.8 53 2.1e-06 19.5 0.0 1 1 6e-08 4e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 1407 # 1772 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_1 - 138 ABC_ATPase PF09818.4 448 0.00022 12.2 0.0 1 1 4.2e-06 0.00028 11.8 0.0 243 265 35 57 13 62 0.82 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_24 - 92 zinc_ribbon_5 PF13719.1 37 7.8e-06 17.8 2.9 1 1 3.2e-07 2.2e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 511 ATP_bind_1 PF03029.12 238 0.00036 12.4 0.0 1 1 3e-05 0.00099 11.0 0.0 1 23 249 271 249 276 0.90 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 ATP_bind_1 PF03029.12 238 0.00062 11.6 0.0 1 1 2.6e-05 0.00086 11.2 0.0 1 21 41 61 41 67 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_14 - 289 DDE_Tnp_IS240 PF13610.1 140 9.2e-13 40.7 0.0 1 1 7.1e-14 1.6e-12 39.9 0.0 2 129 130 260 129 272 0.89 # 6441 # 7307 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.549 3_6 - 196 DDE_Tnp_IS240 PF13610.1 140 1.2e-08 27.3 0.0 1 1 7e-10 1.6e-08 27.0 0.0 2 137 30 167 29 169 0.92 # 3686 # 4273 # -1 # ID=3_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.532 1_30 - 196 DDE_Tnp_IS240 PF13610.1 140 5.4e-08 25.2 0.0 1 1 3.2e-09 7.1e-08 24.9 0.0 3 137 31 167 29 169 0.92 # 24465 # 25052 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 1_24 - 92 Zn_Tnp_IS1595 PF12760.2 46 0.00012 14.2 2.3 1 1 3.4e-06 0.00023 13.4 2.3 21 46 8 38 5 38 0.74 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 511 AAA_10 PF12846.2 304 6.4e-06 18.1 0.0 1 1 3e-07 1e-05 17.4 0.0 4 29 247 272 244 298 0.85 # 4666 # 6198 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.375 3_1 - 138 AAA_10 PF12846.2 304 0.00017 13.4 0.0 1 1 6.5e-06 0.00022 13.0 0.0 3 22 38 57 36 67 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_23 - 326 HTH_20 PF12840.2 61 5.4e-05 15.4 0.0 1 2 0.00076 0.051 5.8 0.0 24 47 102 125 98 125 0.89 # 16741 # 17718 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 1_23 - 326 HTH_20 PF12840.2 61 5.4e-05 15.4 0.0 2 2 0.00034 0.023 6.9 0.1 19 58 213 259 185 262 0.77 # 16741 # 17718 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 3_1 - 138 AAA_13 PF13166.1 712 0.0005 10.9 0.0 1 1 7.5e-06 0.0005 10.9 0.0 18 39 38 59 24 101 0.86 # 1 # 414 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 2_26 - 389 ArsA_ATPase PF02374.10 305 1.2e-06 20.1 0.4 1 2 1.7e-06 0.00011 13.6 0.1 9 36 115 142 109 151 0.89 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 ArsA_ATPase PF02374.10 305 1.2e-06 20.1 0.4 2 2 0.0011 0.074 4.3 0.0 123 136 231 244 221 251 0.84 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_24 - 92 DUF2387 PF09526.5 71 0.00012 14.4 0.2 1 1 2.3e-06 0.00015 14.0 0.2 10 47 7 47 5 72 0.76 # 18676 # 18951 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_26 - 389 AAA_31 PF13614.1 157 6.6e-10 31.5 0.0 1 2 1.4e-08 9.2e-07 21.3 0.0 2 49 108 155 107 195 0.91 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_26 - 389 AAA_31 PF13614.1 157 6.6e-10 31.5 0.0 2 2 0.00018 0.012 7.9 0.1 110 152 227 268 223 272 0.84 # 16158 # 17324 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 2_21 - 176 SSB PF00436.20 104 2.2e-41 132.3 0.4 1 1 4.5e-43 3e-41 131.9 0.4 1 101 6 109 6 112 0.96 # 12075 # 12602 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_1 - 142 HTH_21 PF13276.1 60 2e-19 61.8 2.9 1 1 2.1e-20 4.6e-19 60.6 2.9 3 60 47 103 44 103 0.93 # 2 # 427 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_2 - 302 HTH_21 PF13276.1 60 4.1e-19 60.8 2.0 1 2 8.2e-19 1.8e-17 55.5 0.6 6 57 49 106 45 109 0.79 # 544 # 1449 # -1 # ID=3_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 3_2 - 302 HTH_21 PF13276.1 60 4.1e-19 60.8 2.0 2 2 0.0095 0.21 4.0 0.0 11 33 264 288 255 301 0.77 # 544 # 1449 # -1 # ID=3_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 2_14 - 289 HTH_21 PF13276.1 60 1.1e-12 40.2 0.1 1 1 2.1e-13 4.6e-12 38.2 0.0 4 59 47 101 44 102 0.90 # 6441 # 7307 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.549 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/122feb5d-21bd-41f0-85aa-1351d03d6c0a # Target file: checkm_output/bins/pm1638/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1638/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/122feb5d-21bd-41f0-85aa-1351d03d6c0a checkm_output/bins/pm1638/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:48:21 2017 # [ok]