# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 341 HTH_IclR PF09339.5 52 1.7e-06 20.1 0.1 1 1 5.9e-08 4.7e-06 18.8 0.1 15 40 14 39 13 40 0.95 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 260 ABC_tran PF00005.22 137 0.00012 15.0 0.3 1 2 1.2e-05 0.00095 12.1 0.0 8 30 99 121 93 136 0.86 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 ABC_tran PF00005.22 137 0.00012 15.0 0.3 2 2 0.051 4 0.3 0.0 107 134 143 172 126 174 0.74 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 341 HTH_22 PF13309.1 64 0.00052 12.4 0.0 1 1 1.3e-05 0.001 11.4 0.0 46 64 21 39 10 39 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_AsnC-type PF13404.1 42 0.00047 12.3 0.0 1 1 1.5e-05 0.0012 11.0 0.0 18 36 18 36 15 40 0.91 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_5 - 188 N6_Mtase PF02384.11 311 0.00012 13.8 0.0 1 2 1.7e-05 0.0013 10.3 0.0 28 64 32 68 21 83 0.88 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 N6_Mtase PF02384.11 311 0.00012 13.8 0.0 2 2 0.018 1.4 0.4 0.0 127 137 114 124 103 134 0.82 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 4_4 - 302 rve_3 PF13683.1 67 5.4e-20 63.3 0.1 1 1 4.8e-21 1.9e-19 61.6 0.0 2 67 216 281 215 281 0.98 # 1363 # 2268 # 1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 1_3 - 341 rve_3 PF13683.1 67 0.00034 12.7 0.1 1 1 3.2e-05 0.0013 10.9 0.0 6 65 220 287 215 288 0.87 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 260 Sigma54_activat PF00158.21 168 0.00011 14.3 0.1 1 1 8.2e-06 0.00065 11.8 0.1 18 53 98 133 82 198 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 FtsK_SpoIIIE PF01580.13 205 3.7e-06 19.1 0.0 1 1 1.1e-07 4.4e-06 18.8 0.0 20 66 52 100 35 103 0.79 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_38 - 877 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.5 0.1 1 2 4.1e-06 0.00016 13.7 0.0 39 63 477 505 464 508 0.84 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.5 0.1 2 2 0.03 1.2 1.1 0.0 75 166 531 626 530 669 0.83 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_3 - 341 HTH_40 PF14493.1 91 0.00014 14.6 0.0 1 1 3.8e-06 0.0003 13.6 0.0 4 35 8 39 5 69 0.91 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_38 PF13936.1 44 1e-11 36.8 0.5 1 1 5.2e-13 4.1e-11 34.9 0.2 6 41 3 38 2 40 0.94 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 877 MobB PF03205.9 140 0.0002 13.6 0.2 1 2 2.7e-05 0.0021 10.3 0.0 4 37 484 516 482 524 0.79 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 MobB PF03205.9 140 0.0002 13.6 0.2 2 2 0.034 2.7 0.3 0.0 25 64 696 733 691 745 0.86 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_3 - 341 TetR_N PF00440.18 47 0.00055 12.2 0.2 1 1 1.7e-05 0.0014 10.9 0.0 16 36 17 37 16 43 0.86 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 1757 AAA_19 PF13245.1 76 1.2e-07 24.0 1.8 1 1 1e-08 4.1e-07 22.3 0.4 5 76 979 1047 974 1047 0.74 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_2 - 260 AAA_19 PF13245.1 76 0.00033 13.0 0.0 1 1 2.1e-05 0.00083 11.7 0.0 10 37 103 129 96 154 0.81 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 341 Sigma70_r4_2 PF08281.7 54 6.4e-08 24.6 0.0 1 1 1.9e-09 1.5e-07 23.4 0.0 25 48 16 39 12 40 0.94 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_4 - 302 rve PF00665.21 120 3.9e-25 80.9 0.1 1 1 3.4e-26 8.9e-25 79.7 0.0 3 119 123 243 121 244 0.96 # 1363 # 2268 # 1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 1_3 - 341 rve PF00665.21 120 1.1e-22 72.9 0.0 1 1 8.4e-24 2.2e-22 72.0 0.0 3 118 118 242 117 244 0.96 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_5 - 398 rve PF00665.21 120 1.7e-15 49.8 0.0 1 1 1.1e-16 2.9e-15 49.1 0.0 2 118 130 260 129 262 0.95 # 2840 # 4033 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 260 AFG1_ATPase PF03969.11 362 5.7e-05 14.6 0.2 1 1 2.8e-06 0.00022 12.6 0.2 63 216 103 254 43 259 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 341 Terminase_5 PF06056.7 58 0.00047 12.3 0.0 1 1 1.4e-05 0.0011 11.1 0.0 9 36 13 40 9 44 0.85 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_5 - 283 TIGR00573 TIGR00573 217 5.4e-15 47.7 0.0 1 1 1.1e-16 8.8e-15 47.0 0.0 12 181 107 274 103 281 0.80 # 3460 # 4308 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 2_5 - 188 Methyltransf_26 PF13659.1 117 2.5e-13 42.7 0.0 1 1 5.9e-15 4.7e-13 41.8 0.0 2 114 52 147 51 150 0.91 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_43 - 107 Zeta_toxin PF06414.7 201 0.00025 12.7 0.1 1 1 1e-05 0.0004 12.1 0.1 14 40 70 96 59 102 0.82 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_17 - 739 Zeta_toxin PF06414.7 201 0.00062 11.4 0.0 1 1 7e-05 0.0028 9.3 0.0 21 49 190 219 182 236 0.85 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_16 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.1 12.9 1 3 0.083 3.3 -0.2 0.0 41 86 223 269 219 281 0.81 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.1 12.9 2 3 2.3e-05 0.00089 11.4 3.5 7 147 420 552 416 562 0.84 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 AAA_30 PF13604.1 196 1.9e-44 144.1 12.9 3 3 1.6e-43 6.2e-42 135.9 0.8 1 186 968 1156 968 1160 0.95 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_17 - 739 AAA_30 PF13604.1 196 0.00047 12.3 0.0 1 1 2.6e-05 0.001 11.2 0.0 21 57 188 224 180 230 0.85 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 4_3 - 122 CPSase_L_D3 PF02787.14 123 0.0004 12.7 0.2 1 2 0.0027 0.21 3.9 0.0 5 31 11 37 8 49 0.85 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_3 - 122 CPSase_L_D3 PF02787.14 123 0.0004 12.7 0.2 2 2 0.00031 0.025 7.0 0.1 42 80 76 112 73 117 0.89 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_3 - 122 HTH_Tnp_1 PF01527.15 76 3e-21 67.8 1.1 1 1 9.7e-23 3.8e-21 67.5 0.6 2 74 8 87 7 89 0.89 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_2 - 63 HTH_Tnp_1 PF01527.15 76 1.6e-14 46.3 0.1 1 1 4.6e-16 1.8e-14 46.1 0.1 1 51 5 55 5 60 0.92 # 597 # 785 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_3 - 341 GerE PF00196.14 58 1.5e-06 20.1 0.0 1 1 3.6e-08 2.8e-06 19.2 0.0 17 39 16 38 8 40 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_17 - 739 TraG-D_C PF12696.2 128 6.2e-21 67.2 0.0 1 1 1.4e-22 1.1e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 Bac_DnaA PF00308.13 219 8.4e-10 31.2 0.0 1 1 1.6e-11 1.2e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_23 - 181 DivIC PF04977.10 80 0.00018 13.6 4.6 1 1 4e-06 0.00031 12.8 4.6 17 66 76 124 72 125 0.92 # 15180 # 15722 # 1 # ID=2_23;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_3 - 341 Sigma70_r4 PF04545.11 50 0.00033 12.6 0.2 1 1 2e-05 0.0016 10.4 0.1 19 39 16 36 9 39 0.88 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 DUF2316 PF10078.4 89 0.00042 12.9 0.0 1 1 1.1e-05 0.00088 11.9 0.0 20 82 14 85 5 91 0.82 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 260 AAA PF00004.24 132 1.5e-07 24.3 0.0 1 1 3.2e-09 2.5e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_9 - 653 KorB PF08535.5 93 9.7e-06 18.3 0.0 1 1 1.2e-06 4.8e-05 16.1 0.0 2 43 152 193 151 202 0.93 # 4643 # 6601 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_3 - 341 KorB PF08535.5 93 0.00055 12.7 0.0 1 1 5.7e-05 0.0023 10.7 0.0 2 30 16 44 15 108 0.78 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_2 - 327 Hydantoinase_A PF01968.13 290 2.3e-07 22.7 1.8 1 2 7.8e-07 6.2e-05 14.7 0.1 72 97 164 189 152 199 0.82 # 337 # 1317 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 2_2 - 327 Hydantoinase_A PF01968.13 290 2.3e-07 22.7 1.8 2 2 0.00017 0.013 7.1 0.1 210 265 248 303 201 323 0.77 # 337 # 1317 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_17 - 739 AAA_16 PF13191.1 185 3.4e-06 19.7 0.0 1 1 6.1e-07 1.6e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 AAA_16 PF13191.1 185 5.2e-05 15.9 1.1 1 1 8.9e-06 0.00023 13.7 0.1 21 41 99 119 86 151 0.78 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 AAA_16 PF13191.1 185 7.1e-05 15.4 0.0 1 1 7.3e-06 0.00019 14.0 0.0 22 51 70 99 64 104 0.90 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 AAA_22 PF13401.1 131 1.2e-06 21.3 0.2 1 2 4.5e-05 0.0018 11.0 0.0 5 21 103 119 99 131 0.83 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_22 PF13401.1 131 1.2e-06 21.3 0.2 2 2 0.00073 0.029 7.1 0.0 88 103 154 181 126 203 0.66 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 AAA_22 PF13401.1 131 0.00082 12.1 0.0 1 1 3.4e-05 0.0014 11.4 0.0 3 27 71 95 66 103 0.86 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 TIGR00362 TIGR00362 437 4.8e-11 34.5 0.0 1 1 7.1e-13 5.6e-11 34.3 0.0 139 240 104 203 28 210 0.86 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 341 NUMOD1 PF07453.8 37 0.0002 13.8 0.1 1 1 4.9e-06 0.00038 12.9 0.1 20 37 21 38 19 38 0.91 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 260 AAA_29 PF13555.1 62 0.00059 12.0 0.0 1 1 1.4e-05 0.0011 11.1 0.0 19 59 98 139 89 141 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_21 - 947 Orn_Arg_deC_N PF02784.11 251 0.00096 10.9 0.1 1 1 1.2e-05 0.00096 10.9 0.1 171 212 617 657 605 689 0.79 # 21695 # 24535 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_2 - 260 AAA_28 PF13521.1 163 0.00094 11.7 1.8 1 2 0.063 5 -0.4 0.1 84 110 35 63 3 82 0.67 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_28 PF13521.1 163 0.00094 11.7 1.8 2 2 3e-05 0.0023 10.4 0.2 1 43 104 151 104 172 0.70 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_6 - 140 Mnd1 PF03962.10 188 0.002 10.4 5.3 1 1 4.5e-05 0.0036 9.5 5.2 66 136 25 100 17 111 0.68 # 3959 # 4378 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_5 - 283 RNase_H_2 PF13482.1 164 9.8e-05 14.8 0.0 1 1 8.5e-06 0.00067 12.1 0.0 1 79 105 199 105 254 0.58 # 3460 # 4308 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 1_3 - 341 HTH_3 PF01381.17 55 7.4e-07 21.6 0.1 1 1 1.8e-08 1.4e-06 20.7 0.1 7 37 15 45 8 48 0.91 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_23 PF13384.1 50 6.5e-09 27.9 0.0 1 1 1e-09 2e-08 26.3 0.0 9 40 9 40 2 43 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_3 - 122 HTH_23 PF13384.1 50 1.8e-07 23.3 0.1 1 1 1.8e-08 3.7e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_9 - 653 HTH_23 PF13384.1 50 1.1e-06 20.8 0.3 1 1 2.9e-07 5.7e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 4643 # 6601 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 4_2 - 63 HTH_23 PF13384.1 50 0.00021 13.5 0.1 1 1 1.3e-05 0.00026 13.3 0.1 7 44 16 54 12 60 0.81 # 597 # 785 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_3 - 341 HTH_7 PF02796.10 45 2e-11 36.2 0.3 1 1 6.8e-13 5.4e-11 34.9 0.3 13 44 9 40 5 41 0.93 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_19 PF12844.2 64 1.2e-05 17.9 0.0 1 1 2.7e-07 2.1e-05 17.1 0.0 7 52 12 58 11 70 0.82 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_29 PF13551.1 112 2e-06 20.5 0.0 1 1 2.4e-07 6.3e-06 18.9 0.0 6 35 12 40 8 102 0.73 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_3 - 122 HTH_29 PF13551.1 112 1.8e-05 17.5 0.2 1 1 1e-06 2.7e-05 16.9 0.2 11 71 29 88 18 109 0.67 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_9 - 653 HTH_29 PF13551.1 112 0.00017 14.3 0.2 1 1 2.7e-05 0.00072 12.3 0.0 4 37 145 178 142 235 0.82 # 4643 # 6601 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_5 - 283 DNA_pol_A_exo1 PF01612.15 176 1e-05 17.7 0.0 1 1 3.2e-07 2.6e-05 16.3 0.0 20 95 102 196 86 220 0.79 # 3460 # 4308 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 2_5 - 188 Methyltransf_31 PF13847.1 152 3e-06 19.5 0.0 1 1 4.8e-08 3.8e-06 19.1 0.0 5 119 52 162 48 183 0.83 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 260 Arch_ATPase PF01637.13 234 0.00074 11.8 0.1 1 2 3.4e-05 0.0027 9.9 0.0 8 37 90 119 87 140 0.79 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 Arch_ATPase PF01637.13 234 0.00074 11.8 0.1 2 2 0.071 5.6 -0.9 0.0 121 150 167 192 144 203 0.68 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 PhoH PF02562.11 205 8.3e-08 24.2 0.1 1 1 3.6e-09 2.8e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_5 PF07728.9 139 2.3e-05 16.7 0.3 1 2 3.6e-06 0.00029 13.2 0.2 1 74 104 173 104 180 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_5 PF07728.9 139 2.3e-05 16.7 0.3 2 2 0.053 4.2 -0.3 0.0 90 123 225 258 218 259 0.63 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 ResIII PF04851.10 184 0.00029 13.3 0.0 1 2 6.9e-05 0.0054 9.1 0.0 8 50 89 127 49 135 0.78 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 ResIII PF04851.10 184 0.00029 13.3 0.0 2 2 0.0088 0.69 2.3 0.0 112 163 131 181 127 202 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_17 - 739 TrwB_AAD_bind PF10412.4 386 2.1e-150 493.1 0.0 1 1 9.7e-152 2.5e-150 492.9 0.0 2 386 172 561 171 561 0.99 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 877 TrwB_AAD_bind PF10412.4 386 3.2e-07 21.8 0.1 1 2 7.2e-08 1.9e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 TrwB_AAD_bind PF10412.4 386 3.2e-07 21.8 0.1 2 2 0.061 1.6 -0.3 0.0 261 317 714 770 686 773 0.92 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_43 - 107 TrwB_AAD_bind PF10412.4 386 0.00019 12.6 0.0 1 2 0.056 1.5 -0.2 0.0 295 331 25 61 17 68 0.71 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_43 - 107 TrwB_AAD_bind PF10412.4 386 0.00019 12.6 0.0 2 2 1.9e-05 0.0005 11.3 0.0 5 42 62 99 58 103 0.88 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 2_2 - 327 MutL PF13941.1 457 7e-05 13.8 0.0 1 1 1.4e-06 0.00011 13.2 0.0 226 350 146 270 128 296 0.62 # 337 # 1317 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 2_5 - 188 Methyltransf_12 PF08242.7 99 6.1e-05 16.1 0.0 1 1 1.2e-06 9.4e-05 15.5 0.0 1 99 55 144 55 144 0.84 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 Methyltrans_SAM PF10672.4 286 0.00078 10.9 0.0 1 1 1.5e-05 0.0011 10.3 0.0 196 261 113 173 100 177 0.77 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 260 DUF258 PF03193.11 161 1e-05 17.3 0.0 1 1 2e-07 1.5e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_5 - 283 TIGR01406 TIGR01406 231 5.4e-17 54.4 0.0 1 1 1.1e-18 8.9e-17 53.7 0.0 4 167 106 265 104 280 0.74 # 3460 # 4308 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 1_38 - 877 DUF87 PF01935.12 229 2.3e-07 23.4 0.0 1 1 1.7e-08 6.8e-07 21.9 0.0 26 221 483 669 469 677 0.75 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_43 - 107 DUF87 PF01935.12 229 0.00039 12.8 0.0 1 1 1.5e-05 0.00061 12.2 0.0 25 50 74 99 72 103 0.91 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 4_3 - 122 HTH_28 PF13518.1 52 1.5e-08 27.2 0.5 1 1 1.2e-09 3.1e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_3 - 341 HTH_28 PF13518.1 52 3.8e-08 25.9 0.1 1 1 3.6e-09 9.6e-08 24.6 0.1 7 34 12 39 8 40 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_2 - 63 HTH_28 PF13518.1 52 8.2e-07 21.6 0.1 1 1 3.9e-08 1e-06 21.3 0.1 1 35 15 50 15 58 0.95 # 597 # 785 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_6 - 140 MerR-DNA-bind PF09278.6 65 0.00033 13.7 10.3 1 2 7.9e-05 0.0063 9.6 4.0 20 64 12 56 10 57 0.94 # 3959 # 4378 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 3_6 - 140 MerR-DNA-bind PF09278.6 65 0.00033 13.7 10.3 2 2 0.00023 0.018 8.1 0.4 32 57 61 86 58 109 0.89 # 3959 # 4378 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_3 - 341 HTH_24 PF13412.1 48 3.6e-07 22.2 0.1 1 1 7.8e-09 6.1e-07 21.4 0.1 10 40 11 40 10 43 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_30 PF13556.1 59 7.1e-05 15.0 0.0 1 1 1.9e-06 0.00015 13.9 0.0 10 34 15 39 10 43 0.86 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_5 - 188 TIGR03533 TIGR03533 284 0.00029 12.5 0.0 1 1 6e-06 0.00047 11.8 0.0 116 210 45 133 37 141 0.85 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 TIGR03534 TIGR03534 253 1.7e-07 23.2 0.0 1 1 2.5e-09 2e-07 22.9 0.0 81 175 45 131 15 148 0.85 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_5 - 283 TIGR01298 TIGR01298 200 1.3e-05 17.3 0.9 1 1 1.5e-06 0.00012 14.2 0.9 93 189 167 267 97 275 0.80 # 3460 # 4308 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 1_3 - 341 HTH_10 PF04967.7 53 0.00018 13.7 0.0 1 1 4.4e-06 0.00035 12.8 0.0 24 45 18 39 15 43 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_31 PF13560.1 64 2.2e-05 17.2 0.0 1 1 6.8e-07 5.4e-05 16.0 0.0 12 54 15 60 13 61 0.85 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 1757 UvrD_C_2 PF13538.1 104 2.6e-08 26.6 0.7 1 2 0.0034 0.27 4.1 0.0 6 44 1227 1265 1223 1294 0.75 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 UvrD_C_2 PF13538.1 104 2.6e-08 26.6 0.7 2 2 5.2e-08 4.1e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 2_5 - 188 TIGR00755 TIGR00755 256 9.7e-09 27.1 0.0 1 1 1.6e-10 1.3e-08 26.7 0.0 8 105 29 123 25 134 0.90 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_2 - 327 StbA PF06406.6 318 1e-150 493.6 0.1 1 1 1.4e-152 1.1e-150 493.4 0.1 1 318 1 324 1 324 0.98 # 337 # 1317 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_17 - 739 AAA_17 PF13207.1 121 0.00026 14.4 0.0 1 1 1.2e-05 0.00095 12.6 0.0 3 27 189 217 187 262 0.68 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_6 - 94 TIGR02211 TIGR02211 221 0.0001 14.1 0.0 1 1 1.4e-06 0.00011 14.0 0.0 114 167 14 72 2 87 0.78 # 4354 # 4635 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.528 1_2 - 260 AAA_25 PF13481.1 194 2e-05 16.6 0.0 1 1 4.1e-07 3.3e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_16 - 1757 Viral_helicase1 PF01443.13 234 0.00079 11.5 0.2 1 2 0.00045 0.036 6.1 0.0 1 22 988 1009 988 1122 0.80 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 1757 Viral_helicase1 PF01443.13 234 0.00079 11.5 0.2 2 2 0.0062 0.49 2.4 0.0 171 234 1387 1447 1336 1447 0.63 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_43 - 107 Pox_A32 PF04665.7 241 0.00014 13.8 0.0 1 2 0.073 2.9 -0.4 0.0 3 28 42 66 41 70 0.72 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_43 - 107 Pox_A32 PF04665.7 241 0.00014 13.8 0.0 2 2 8.3e-06 0.00033 12.6 0.0 7 42 66 101 60 104 0.89 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_38 - 877 Pox_A32 PF04665.7 241 0.00073 11.4 0.0 1 1 4.6e-05 0.0018 10.1 0.0 7 38 474 505 470 520 0.85 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_2 - 260 RuvB_N PF05496.7 234 0.00029 12.5 0.0 1 1 6.5e-06 0.00051 11.7 0.0 50 119 102 182 92 190 0.65 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_14 PF13173.1 128 9.4e-07 21.4 0.0 1 1 2.3e-08 1.8e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_2 - 327 Hydant_A_N PF05378.8 176 0.002 10.2 3.3 1 2 0.017 1.3 1.0 0.3 95 123 115 143 2 155 0.58 # 337 # 1317 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 2_2 - 327 Hydant_A_N PF05378.8 176 0.002 10.2 3.3 2 2 6.3e-05 0.005 8.9 0.2 2 48 172 216 171 227 0.81 # 337 # 1317 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_3 - 341 HTH_Tnp_ISL3 PF13542.1 52 1.6e-05 16.6 0.1 1 1 1.5e-06 6.1e-05 14.8 0.0 21 49 11 39 2 40 0.82 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_3 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00028 12.7 1.6 1 1 1.4e-05 0.00057 11.7 0.1 7 42 8 44 8 46 0.92 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_3 - 122 CENP-B_N PF04218.8 53 2.5e-06 19.5 0.0 1 1 1.2e-07 4.7e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 1040 # 1405 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_3 - 341 CENP-B_N PF04218.8 53 5.5e-05 15.2 0.1 1 1 2.6e-06 0.0001 14.3 0.1 20 47 15 42 2 43 0.83 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_17 - 739 T4SS-DNA_transf PF02534.9 469 3.7e-10 31.5 0.0 1 1 2.1e-11 8.1e-10 30.3 0.0 250 362 362 477 198 501 0.76 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_38 - 877 T4SS-DNA_transf PF02534.9 469 0.00013 13.1 0.0 1 2 0.0026 0.1 3.6 0.0 105 182 534 605 471 623 0.85 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_38 - 877 T4SS-DNA_transf PF02534.9 469 0.00013 13.1 0.0 2 2 0.00021 0.0085 7.2 0.0 319 378 712 770 663 772 0.90 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_5 - 188 MTS PF05175.9 170 1.9e-09 29.7 0.0 1 1 3.3e-11 2.6e-09 29.2 0.0 31 141 50 149 41 165 0.84 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_43 - 107 RNA_helicase PF00910.17 107 0.0001 15.1 0.0 1 1 3.2e-06 0.00025 13.8 0.0 1 29 75 103 75 106 0.91 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_2 - 260 NTPase_1 PF03266.10 168 0.00018 13.8 0.1 1 2 0.0016 0.13 4.5 0.1 2 30 105 133 104 153 0.83 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 NTPase_1 PF03266.10 168 0.00018 13.8 0.1 2 2 0.00025 0.019 7.2 0.0 88 112 157 181 144 204 0.72 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 341 GcrA PF07750.6 162 8.9e-05 15.3 0.0 1 1 2.4e-06 0.00019 14.2 0.0 6 36 5 34 2 51 0.93 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_26 PF13443.1 63 1.4e-06 21.1 0.0 1 1 3.4e-08 2.6e-06 20.2 0.0 4 41 11 48 10 58 0.90 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_17 PF12728.2 51 0.00093 12.1 0.9 1 1 2.5e-05 0.002 11.0 0.1 6 26 22 43 18 86 0.88 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 HTH_11 PF08279.7 55 1.2e-06 20.8 0.1 1 1 3.5e-08 2.8e-06 19.5 0.1 8 37 12 39 5 40 0.80 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 341 TrmB PF01978.14 68 0.00021 13.6 0.0 1 1 5.6e-06 0.00045 12.5 0.0 16 44 11 39 10 40 0.93 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_5 - 283 RNase_T PF00929.19 164 2.7e-25 82.1 0.0 1 1 4.4e-27 3.5e-25 81.8 0.0 1 163 105 262 105 263 0.95 # 3460 # 4308 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 1_3 - 341 DUF1670 PF07900.6 220 0.00077 11.3 0.1 1 1 1.8e-05 0.0014 10.4 0.1 189 219 9 39 4 40 0.92 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 877 AAA_10 PF12846.2 304 1.7e-49 161.4 0.0 1 1 1.5e-50 3e-49 160.6 0.0 1 294 480 769 480 775 0.89 # 35147 # 37777 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_17 - 739 AAA_10 PF12846.2 304 1.1e-10 33.9 0.0 1 1 1e-10 2e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 17209 # 19425 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_2 - 260 AAA_10 PF12846.2 304 6.2e-06 18.3 0.7 1 2 3.8e-06 7.5e-05 14.8 0.1 1 33 102 134 102 171 0.89 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 AAA_10 PF12846.2 304 6.2e-06 18.3 0.7 2 2 0.097 1.9 0.3 0.0 202 247 142 192 134 202 0.68 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_43 - 107 AAA_10 PF12846.2 304 4.6e-05 15.5 0.0 1 2 0.011 0.21 3.5 0.0 273 289 25 41 10 54 0.78 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_43 - 107 AAA_10 PF12846.2 304 4.6e-05 15.5 0.0 2 2 8.8e-05 0.0017 10.3 0.0 2 24 73 95 72 100 0.86 # 39300 # 39620 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 1_3 - 341 HTH_20 PF12840.2 61 0.00031 13.2 0.0 1 1 8.2e-06 0.00065 12.1 0.0 19 46 13 39 10 40 0.89 # 1613 # 2635 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_5 - 188 RrnaAD PF00398.15 262 3.3e-09 28.6 0.0 1 1 5.3e-11 4.2e-09 28.3 0.0 9 113 29 128 24 149 0.89 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 188 Methyltransf_18 PF12847.2 112 6e-10 32.3 0.0 1 1 1.5e-11 1.2e-09 31.3 0.0 4 109 53 146 50 148 0.89 # 2387 # 2950 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 260 IstB_IS21 PF01695.12 178 3.6e-73 237.3 0.1 1 2 0.049 3.9 -0.6 0.0 64 97 25 57 24 61 0.64 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 260 IstB_IS21 PF01695.12 178 3.6e-73 237.3 0.1 2 2 9.8e-75 7.7e-73 236.2 0.1 1 178 56 235 56 235 0.98 # 834 # 1613 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_16 - 1757 AAA_11 PF13086.1 236 0.00044 12.4 4.3 1 1 6.7e-06 0.00053 12.1 0.0 2 74 969 1038 968 1060 0.80 # 11939 # 17209 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 2_7 - 176 SSB PF00436.20 104 5.3e-41 131.4 0.3 1 1 9.1e-43 7.2e-41 130.9 0.3 1 101 6 109 6 112 0.95 # 3765 # 4292 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 4_4 - 302 HTH_21 PF13276.1 60 4.9e-19 60.8 2.0 1 2 2.7e-19 2.2e-17 55.5 0.6 6 57 49 106 45 109 0.79 # 1363 # 2268 # 1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 4_4 - 302 HTH_21 PF13276.1 60 4.9e-19 60.8 2.0 2 2 0.0032 0.25 4.0 0.0 11 33 264 288 255 301 0.77 # 1363 # 2268 # 1 # ID=4_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7e2984be-fb84-4976-8169-7516212db4b9 # Target file: checkm_output/bins/pm1637/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1637/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7e2984be-fb84-4976-8169-7516212db4b9 checkm_output/bins/pm1637/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:48:21 2017 # [ok]