# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 136 HTH_38 PF13936.1 44 2e-07 19.9 0.0 1 1 6.4e-08 5.1e-07 18.6 0.0 16 39 107 130 99 131 0.91 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Sigma70_r4_2 PF08281.7 54 1.2e-06 17.4 0.0 1 1 3.2e-07 2.6e-06 16.3 0.0 24 46 109 131 99 133 0.88 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Terminase_5 PF06056.7 58 1.7e-07 20.1 0.0 1 1 4.5e-08 3.6e-07 19.1 0.0 12 35 110 133 99 134 0.88 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_Tnp_1 PF01527.15 76 2.1e-05 13.8 0.0 1 1 6.2e-06 5e-05 12.7 0.0 17 45 104 133 98 134 0.87 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 GerE PF00196.14 58 8.7e-07 17.6 0.0 1 1 2.1e-07 1.6e-06 16.8 0.0 12 38 105 131 102 133 0.90 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Trp_repressor PF01371.14 88 9.2e-06 15.0 0.0 1 2 0.09 0.72 -0.7 0.0 33 42 27 36 11 60 0.71 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Trp_repressor PF01371.14 88 9.2e-06 15.0 0.0 2 2 4.8e-06 3.9e-05 13.0 0.0 42 66 105 128 99 132 0.87 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Sigma70_r4 PF04545.11 50 2.1e-05 13.2 0.0 1 1 8.7e-06 3.5e-05 12.5 0.0 17 39 102 130 99 133 0.82 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_1 - 169 Sigma70_r4 PF04545.11 50 7.2e-05 11.5 0.0 1 1 3.4e-05 0.00013 10.6 0.0 9 38 137 165 136 169 0.77 # 1 # 507 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_8 - 136 HTH_3 PF01381.17 55 1.2e-07 20.9 0.0 1 1 2.9e-08 2.3e-07 20.0 0.0 5 33 107 135 103 135 0.90 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_23 PF13384.1 50 9.2e-12 33.8 0.0 1 1 4.5e-12 3.6e-11 31.9 0.0 5 39 99 133 96 134 0.94 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_19 PF12844.2 64 1.7e-05 14.2 0.1 1 1 5.6e-06 4.4e-05 12.9 0.1 10 36 109 135 105 135 0.95 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_29 PF13551.1 112 1.8e-06 17.5 0.2 1 1 9.3e-07 7.5e-06 15.5 0.0 1 33 101 132 101 134 0.93 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_28 PF13518.1 52 8.4e-09 24.8 0.3 1 1 4.2e-09 3.4e-08 22.8 0.0 2 33 101 132 100 134 0.86 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_Tnp_ISL3 PF13542.1 52 6.1e-06 14.8 0.0 1 2 0.053 0.43 -0.7 0.0 14 25 67 78 61 79 0.82 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_Tnp_ISL3 PF13542.1 52 6.1e-06 14.8 0.0 2 2 4.8e-06 3.8e-05 12.2 0.0 29 47 113 131 108 131 0.92 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 CENP-B_N PF04218.8 53 8.4e-05 11.4 0.1 1 1 3.3e-05 0.00026 9.8 0.0 19 44 108 133 104 135 0.90 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_17 PF12728.2 51 4.9e-06 16.2 0.1 1 2 0.014 0.11 2.2 0.0 13 25 6 18 1 29 0.85 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_17 PF12728.2 51 4.9e-06 16.2 0.1 2 2 1.8e-05 0.00015 11.5 0.0 2 26 112 135 112 135 0.86 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_11 PF08279.7 55 9.2e-07 17.9 0.3 1 2 0.063 0.51 -0.5 0.0 13 24 61 72 56 74 0.80 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 HTH_11 PF08279.7 55 9.2e-07 17.9 0.3 2 2 1.1e-06 9e-06 14.7 0.0 16 34 112 130 101 130 0.85 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Sigma70_ECF PF07638.6 185 6e-05 12.1 0.0 1 1 1.3e-05 0.0001 11.3 0.0 142 172 101 131 89 133 0.80 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_8 - 136 Phage_terminase PF10668.4 60 1.2e-06 17.7 0.0 1 1 3.1e-07 2.5e-06 16.6 0.0 25 44 114 133 107 135 0.90 # 5587 # 5994 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/612732f8-0d81-4fea-be7c-2360071025c3 # Target file: checkm_output/bins/pm1626/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1626/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/612732f8-0d81-4fea-be7c-2360071025c3 checkm_output/bins/pm1626/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:47:54 2017 # [ok]