# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_2 - 304 HTH_IclR PF09339.5 52 1.2e-05 17.2 0.3 1 3 3.4e-06 0.00022 13.1 0.1 17 45 15 43 5 52 0.81 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 4_2 - 304 HTH_IclR PF09339.5 52 1.2e-05 17.2 0.3 2 3 0.047 3.1 -0.1 0.0 10 25 47 62 46 65 0.85 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 4_2 - 304 HTH_IclR PF09339.5 52 1.2e-05 17.2 0.3 3 3 0.051 3.4 -0.2 0.0 12 30 172 190 170 194 0.80 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_17 - 83 HTH_8 PF02954.14 42 6.7e-06 18.0 0.1 1 1 1.8e-07 1.2e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_13 - 1017 AAA_19 PF13245.1 76 0.00034 12.7 0.0 1 1 1.6e-05 0.0011 11.1 0.0 14 31 492 508 481 518 0.90 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_20 - 696 TraG-D_C PF12696.2 128 9e-05 14.7 0.1 1 1 2.4e-06 0.00016 13.9 0.1 3 94 437 524 435 556 0.78 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 5_1 - 396 DDE_Tnp_1 PF01609.16 213 1.2e-28 92.4 0.0 1 1 2.6e-30 1.7e-28 91.9 0.0 3 212 83 323 81 324 0.93 # 14 # 1201 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_11 - 396 ACT PF01842.20 66 3.4e-05 15.7 0.4 1 3 0.038 2.5 0.1 0.0 13 27 203 217 203 217 0.90 # 4386 # 5573 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 2_11 - 396 ACT PF01842.20 66 3.4e-05 15.7 0.4 2 3 1.7e-05 0.0011 10.8 0.1 7 27 290 310 287 310 0.93 # 4386 # 5573 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 2_11 - 396 ACT PF01842.20 66 3.4e-05 15.7 0.4 3 3 0.076 5 -0.9 0.0 30 59 336 363 334 365 0.74 # 4386 # 5573 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 2_17 - 83 HTH_37 PF13744.1 80 2.8e-05 16.2 0.0 1 1 1.8e-06 5.8e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_10 - 91 HTH_37 PF13744.1 80 0.00057 12.1 0.0 1 1 2.4e-05 0.00078 11.6 0.0 25 53 22 50 19 54 0.92 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_22 - 325 Hydantoinase_A PF01968.13 290 2.6e-08 25.5 2.0 1 2 5e-07 3.3e-05 15.4 0.1 67 96 158 186 144 195 0.82 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_22 - 325 Hydantoinase_A PF01968.13 290 2.6e-08 25.5 2.0 2 2 3.2e-05 0.0021 9.5 0.2 212 265 248 301 191 322 0.76 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_13 - 1017 AAA_22 PF13401.1 131 0.00014 14.4 0.0 1 1 6.7e-06 0.00044 12.7 0.0 8 73 492 561 486 594 0.70 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 4_2 - 304 HTH_1 PF00126.22 60 1.4e-19 62.0 0.7 1 1 3.7e-21 2.4e-19 61.2 0.7 2 59 5 62 4 63 0.96 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_17 - 83 HTH_3 PF01381.17 55 1.2e-09 30.2 0.1 1 1 1.2e-10 2.1e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_31 - 89 HTH_3 PF01381.17 55 7.3e-07 21.4 0.0 1 1 5.6e-08 9.3e-07 21.0 0.0 8 36 41 69 33 78 0.88 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_10 - 91 HTH_3 PF01381.17 55 4.2e-05 15.7 0.0 1 1 3.6e-06 6e-05 15.2 0.0 2 32 21 51 21 55 0.90 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_26 - 160 HTH_3 PF01381.17 55 9.7e-05 14.6 0.1 1 2 0.0029 0.048 5.9 0.0 2 20 15 33 14 37 0.91 # 13826 # 14305 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_26 - 160 HTH_3 PF01381.17 55 9.7e-05 14.6 0.1 2 2 0.0022 0.036 6.3 0.0 1 23 96 118 96 120 0.89 # 13826 # 14305 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_31 - 89 HTH_23 PF13384.1 50 4.6e-06 18.6 0.0 1 1 3.2e-07 7e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_10 - 91 HTH_23 PF13384.1 50 5.3e-06 18.4 0.1 1 1 4e-07 8.8e-06 17.7 0.1 12 38 23 49 19 54 0.85 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_17 - 83 HTH_23 PF13384.1 50 2.9e-05 16.0 0.0 1 1 2.6e-06 5.8e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_17 - 83 HTH_19 PF12844.2 64 2.6e-08 26.2 0.0 1 1 1.7e-09 3.8e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_10 - 91 HTH_19 PF12844.2 64 5.7e-06 18.7 0.0 1 1 3.4e-07 7.5e-06 18.3 0.0 5 35 21 51 21 66 0.92 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_31 - 89 HTH_19 PF12844.2 64 5.6e-05 15.5 0.0 1 1 3.4e-06 7.5e-05 15.1 0.0 4 39 33 69 30 73 0.85 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_20 - 696 TrwB_AAD_bind PF10412.4 386 1.2e-06 19.6 0.9 1 3 1.7e-05 0.0011 9.8 0.0 16 36 134 154 125 158 0.88 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_20 - 696 TrwB_AAD_bind PF10412.4 386 1.2e-06 19.6 0.9 2 3 9.3e-05 0.0061 7.4 0.1 93 140 235 281 229 303 0.80 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_20 - 696 TrwB_AAD_bind PF10412.4 386 1.2e-06 19.6 0.9 3 3 0.083 5.5 -2.3 0.0 293 323 482 512 405 546 0.58 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_13 - 1017 AAA_18 PF13238.1 129 5.6e-05 15.8 1.3 1 1 3.5e-06 0.00023 13.8 0.0 2 19 492 509 492 571 0.76 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_6 - 435 IMS_HHH PF11798.3 32 0.00033 13.1 0.0 1 1 1.5e-05 0.00096 11.6 0.0 12 32 192 212 182 212 0.83 # 1513 # 2817 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_31 - 89 HTH_28 PF13518.1 52 4.1e-05 15.9 0.0 1 1 1.7e-06 5.7e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_17 - 83 HTH_28 PF13518.1 52 0.00028 13.3 0.1 1 1 1.8e-05 0.0006 12.2 0.1 8 29 8 31 6 35 0.78 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_17 - 83 HTH_31 PF13560.1 64 1.3e-09 30.6 0.9 1 1 9.9e-11 1.6e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 8661 # 8909 # 1 # ID=2_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_10 - 91 HTH_31 PF13560.1 64 1.9e-07 23.6 0.4 1 1 1.8e-08 3e-07 22.9 0.3 7 36 21 50 17 65 0.89 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_26 - 160 HTH_31 PF13560.1 64 4.5e-07 22.4 1.2 1 2 0.0047 0.077 5.6 0.0 6 33 14 41 12 48 0.88 # 13826 # 14305 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_26 - 160 HTH_31 PF13560.1 64 4.5e-07 22.4 1.2 2 2 3.7e-06 6.1e-05 15.6 0.3 4 39 94 129 91 135 0.88 # 13826 # 14305 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_31 - 89 HTH_31 PF13560.1 64 1.4e-06 20.9 0.0 1 1 1.1e-07 1.9e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_13 - 1017 DUF2075 PF09848.4 352 0.00023 12.5 0.0 1 1 1.1e-05 0.00073 10.8 0.0 5 22 492 509 489 537 0.87 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_22 - 325 StbA PF06406.6 318 4.7e-157 514.1 0.2 1 1 8.1e-159 5.3e-157 513.9 0.2 1 318 1 322 1 322 0.99 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_13 - 1017 AAA_17 PF13207.1 121 4.1e-05 16.8 0.0 1 1 4.3e-06 0.00028 14.0 0.0 3 27 492 522 492 581 0.72 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_22 - 325 Hydant_A_N PF05378.8 176 0.00043 12.1 3.4 1 4 0.069 4.5 -1.0 0.0 1 19 2 20 2 52 0.83 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_22 - 325 Hydant_A_N PF05378.8 176 0.00043 12.1 3.4 2 4 0.057 3.8 -0.7 0.0 108 154 38 86 17 98 0.66 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_22 - 325 Hydant_A_N PF05378.8 176 0.00043 12.1 3.4 3 4 0.057 3.8 -0.7 0.0 95 129 113 147 89 153 0.76 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_22 - 325 Hydant_A_N PF05378.8 176 0.00043 12.1 3.4 4 4 3.6e-05 0.0024 9.7 0.2 2 51 170 217 169 226 0.82 # 11216 # 12190 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_31 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00024 12.6 0.0 1 1 5e-06 0.00033 12.2 0.0 19 49 35 64 33 65 0.91 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_31 - 89 CENP-B_N PF04218.8 53 0.00093 11.0 0.0 1 1 1.9e-05 0.0013 10.6 0.0 24 49 44 69 34 72 0.88 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_10 - 91 Mor PF08765.6 108 0.00049 12.2 0.0 1 1 9.2e-06 0.0006 11.9 0.0 71 93 27 49 18 57 0.85 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_31 - 89 Phage_CII PF05269.6 91 0.00048 12.5 0.0 1 1 9.2e-06 0.00061 12.2 0.0 17 45 36 64 32 81 0.83 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_4 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00017 13.9 0.0 1 1 2.8e-06 0.00019 13.8 0.0 29 64 18 52 5 58 0.83 # 3635 # 3832 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 2_10 - 91 HTH_26 PF13443.1 63 7.5e-05 15.3 0.0 1 1 3.3e-06 0.00011 14.8 0.0 4 34 22 52 21 56 0.91 # 4095 # 4367 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_31 - 89 HTH_26 PF13443.1 63 0.00018 14.1 0.0 1 1 7.2e-06 0.00024 13.7 0.0 11 47 43 78 33 82 0.90 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 4_2 - 304 MarR_2 PF12802.2 62 8.3e-05 14.6 0.1 1 1 8e-06 0.00053 12.0 0.1 25 48 20 43 8 52 0.89 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_31 - 89 HTH_Crp_2 PF13545.1 76 0.0003 12.9 0.0 1 1 6.6e-06 0.00044 12.4 0.0 26 50 40 64 32 65 0.88 # 16125 # 16391 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_13 - 1017 AAA_10 PF12846.2 304 5.5e-41 133.2 0.1 1 1 3.6e-42 1.2e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 9744 # 12794 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_20 - 696 AAA_10 PF12846.2 304 4.1e-10 31.8 0.0 1 1 1.9e-11 6.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 20466 # 22553 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ff74a356-7880-49c1-af0f-20342a025986 # Target file: checkm_output/bins/pm1588/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1588/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ff74a356-7880-49c1-af0f-20342a025986 checkm_output/bins/pm1588/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:46:58 2017 # [ok]